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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0193300 |
Transcript ID | LotjaGi3g1v0193300.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | GRAS family transcription factor; TAIR: AT3G49950.1 GRAS family transcription factor; Swiss-Prot: sp|Q9SN22|SCL32_ARATH Scarecrow-like protein 32; TrEMBL-Plants: tr|A0A151RP29|A0A151RP29_CAJCA Scarecrow-like protein 32; Found in the gene: LotjaGi3g1v0193300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27903288..27905502) extracted from Lotus japonicus Gifu genome v1.2.
GGATGAAGCCTTAAGAGCAAGCTATGCCCTCCCTCTTCTATAAATATGGCTTCATGATTCACATAGTTATCACCTCCCCT CCACTCTGCCTCTCTACCTTAAACAGCTACATAACCAACCCTTTTTCCACCTTTCTTCTTCAAAATATCCATGCAAGCCA CGTCCTCACACAGCCCCATGAAAGCAGAGCTAAAGCCACCAACCTCCATCTCCTTCCAAAACCCCACCACCACCCCTCTC TTCAACACACCCCACACTAGTACTCCCCTCTCAGGAGCACTCAAAGGTTGTCTTGGAAGCCTTGATGGCGCATGCATCGA GAAGCTCCTCCTCCACTGTGCCAGCGCCTTAGAGAGCAACAACATCACCTTAGCTCAACAAGTCATGTGGGTCCTCAACA ACGTCGCTTCTCCCCAAGGCGACACCAACCAGCGCCTCACCGCGTGGTTTCTCAGAGCACTAATCTCCAGAGCTTCAAGA ATTTGCCCCTCCGTGATGAGTTTCAAGGGAAGCAATAACATTCCTAGGAGGTCAATGACCGTGACCGAGCTAACAGGGTA TGTGGATCTCATTCCATGGCACAGGTTCGGGTTTTGTGCATCAAACAATGAAATTCTCAAAGCTGTTACAGGGTTTCAAA GGGTACATGTTCTTGATTTCAGCATAACCCCTTGTATGCAATGGCCTACTTTTATAGATGCATTAGCTAAAAGACCAGAA GGTCCTCCTTCACTTAGAATCACAGTTCCATCTTTTAGGCCACAGGTTCCTCCATTAGTCAACATTTCAATACATGAAGT TGGGTTACGCTTAGGTAATTTCGCCAAATTCAGAGATGTCCCTTTTGAATTTCATGTCATAGGAGATGAAAATTTACTAC CATCAGAACAATTGAGCAATGAATCAACCAGATTTCAATTTGAGTCCTTGTTGAGTCTATTGAATCCTAGTGTGTTAAAC ATTAGGGAAGATGAAGCATTGGTGATCAATTGCCAAAATTGGCTACGTTACTTGTCTGATGATAATAGAAATTCAAATTC CCTTAGGGATGCTTTTCTGAGTTTAATTAAAGGTCTTAGCCCTCAAATTGTGCTCTTGGTTGATGAGGATTGTGATCTCA GTGCGTCGAGCCTCGTGTCGAGAATCACCGCTTGTTTCAACCATCTGTGGATACCCTTTGATGCACTGGACACTTTTTTG CCTAAGGATAGTTCTCAGAGGACAGAGTTTGAGTCTGACATAGGACAGAAAATTGAGAACATCATAGGGTTTGAAGGTTA TCAGAGAATAGAGAGATTGGAGTCTGGGGTGAAGATGTCACAAAGAATGAAGAATTCAGGGTACTTCAGTGTTCCATTTT GTGACGGAACTGTTAAGGAAGTTAAGGGTTTGCTTGATGAACATGCCGGTGGATGGGGGATGAAGAGGGATGAAGGTATG TTGGTTCTCACGTGGAAGGGAAACAGCTGTGTATTTGCGACAGCTTGGGTCCCTAGTGAAATGAGGGATCATGTTGGTAT GGATGCAACTCTATCTTAAGCGGATGCAGTTCTTCTCTGATCCCATTTGGTGTCTCTTCTCTATCTCAGTTCGGCAATCA AATTATGTCACCTAGATGTTAGTATGACAATTATAAGTTATAACCTTAGGTAGGTGATTTTTAAATGACCCGACACAATT GATCGGTGAGACGGATATTGAGACACCAGATGAGGACAGAGGAGGCAAGTTGGGACCCACCATGGAAGGGGGGCTGCACT TACCTATTGCTTCAATGGTCCAGGGAGAGACAGGGGATATTTCATCACTTTGTGGAATAGGGCAGTAATTTTTTTATCTG CAAAAGACAAGAAGAAAAAAACGGCTGCATTTGGAGAATTATTTTCATTGCACTACAAATTTGTAATGATGTAGCTCTAT ACATTGGATCACATGAAAGGCATAAAGGAAACAATCATGTGTACATTGTCCTTGTATGAGAGACAAAGTTATTGTCTCTT AGCAATGTTTTTCCCTTTCTTTGCAGCTTTAATTTGTATCTGCCCAGACCCTGAGCTTTGGGTACAAAAAATATCTCTCT TACAATTACCCAGTTCATACAATAAAACTTTGTTTAGCAACTTTGATGTCAACTCAAAACATATGCACCAGCATATATAA GGTAAGACCTATGTTAATTAGCACTTAGCAGTGTTTCCACAATGGCAAGTTTTTC
CDS sequence (LotjaGi3g1v0193300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGCCACGTCCTCACACAGCCCCATGAAAGCAGAGCTAAAGCCACCAACCTCCATCTCCTTCCAAAACCCCACCAC CACCCCTCTCTTCAACACACCCCACACTAGTACTCCCCTCTCAGGAGCACTCAAAGGTTGTCTTGGAAGCCTTGATGGCG CATGCATCGAGAAGCTCCTCCTCCACTGTGCCAGCGCCTTAGAGAGCAACAACATCACCTTAGCTCAACAAGTCATGTGG GTCCTCAACAACGTCGCTTCTCCCCAAGGCGACACCAACCAGCGCCTCACCGCGTGGTTTCTCAGAGCACTAATCTCCAG AGCTTCAAGAATTTGCCCCTCCGTGATGAGTTTCAAGGGAAGCAATAACATTCCTAGGAGGTCAATGACCGTGACCGAGC TAACAGGGTATGTGGATCTCATTCCATGGCACAGGTTCGGGTTTTGTGCATCAAACAATGAAATTCTCAAAGCTGTTACA GGGTTTCAAAGGGTACATGTTCTTGATTTCAGCATAACCCCTTGTATGCAATGGCCTACTTTTATAGATGCATTAGCTAA AAGACCAGAAGGTCCTCCTTCACTTAGAATCACAGTTCCATCTTTTAGGCCACAGGTTCCTCCATTAGTCAACATTTCAA TACATGAAGTTGGGTTACGCTTAGGTAATTTCGCCAAATTCAGAGATGTCCCTTTTGAATTTCATGTCATAGGAGATGAA AATTTACTACCATCAGAACAATTGAGCAATGAATCAACCAGATTTCAATTTGAGTCCTTGTTGAGTCTATTGAATCCTAG TGTGTTAAACATTAGGGAAGATGAAGCATTGGTGATCAATTGCCAAAATTGGCTACGTTACTTGTCTGATGATAATAGAA ATTCAAATTCCCTTAGGGATGCTTTTCTGAGTTTAATTAAAGGTCTTAGCCCTCAAATTGTGCTCTTGGTTGATGAGGAT TGTGATCTCAGTGCGTCGAGCCTCGTGTCGAGAATCACCGCTTGTTTCAACCATCTGTGGATACCCTTTGATGCACTGGA CACTTTTTTGCCTAAGGATAGTTCTCAGAGGACAGAGTTTGAGTCTGACATAGGACAGAAAATTGAGAACATCATAGGGT TTGAAGGTTATCAGAGAATAGAGAGATTGGAGTCTGGGGTGAAGATGTCACAAAGAATGAAGAATTCAGGGTACTTCAGT GTTCCATTTTGTGACGGAACTGTTAAGGAAGTTAAGGGTTTGCTTGATGAACATGCCGGTGGATGGGGGATGAAGAGGGA TGAAGGTATGTTGGTTCTCACGTGGAAGGGAAACAGCTGTGTATTTGCGACAGCTTGGGTCCCTAGTGAAATGAGGGATC ATGTTGGTATGGATGCAACTCTATCTTAA
Protein sequence (LotjaGi3g1v0193300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQATSSHSPMKAELKPPTSISFQNPTTTPLFNTPHTSTPLSGALKGCLGSLDGACIEKLLLHCASALESNNITLAQQVMW VLNNVASPQGDTNQRLTAWFLRALISRASRICPSVMSFKGSNNIPRRSMTVTELTGYVDLIPWHRFGFCASNNEILKAVT GFQRVHVLDFSITPCMQWPTFIDALAKRPEGPPSLRITVPSFRPQVPPLVNISIHEVGLRLGNFAKFRDVPFEFHVIGDE NLLPSEQLSNESTRFQFESLLSLLNPSVLNIREDEALVINCQNWLRYLSDDNRNSNSLRDAFLSLIKGLSPQIVLLVDED CDLSASSLVSRITACFNHLWIPFDALDTFLPKDSSQRTEFESDIGQKIENIIGFEGYQRIERLESGVKMSQRMKNSGYFS VPFCDGTVKEVKGLLDEHAGGWGMKRDEGMLVLTWKGNSCVFATAWVPSEMRDHVGMDATLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 34 | 34 | - | – | |
PANTHER | 12 | 449 | 438 | 1.2E-209 | – | |
PANTHER | 12 | 449 | 438 | 1.2E-209 | – | |
ProSiteProfiles | 47 | 447 | 401 | 66.725 | ||
Pfam | 57 | 446 | 390 | 5.8E-89 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0193300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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