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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0193300 |
| Transcript ID | LotjaGi3g1v0193300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Scarecrow transcription factor family protein; TAIR: AT3G49950.1 GRAS family transcription factor; Swiss-Prot: sp|Q9SN22|SCL32_ARATH Scarecrow-like protein 32; TrEMBL-Plants: tr|G7IRJ4|G7IRJ4_MEDTR GRAS family transcription factor; Found in the gene: LotjaGi3g1v0193300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27903964..27905337) extracted from Lotus japonicus Gifu genome v1.2.
TCACACAGCCCCATGAAAGCAGAGCTAAAGCCACCAACCTCCATCTCCTTCCAAAACCCCACCACCACCCCTCTCTTCAA CACACCCCACACTAGTACTCCCCTCTCAGGAGCACTCAAAGGTTGTCTTGGAAGCCTTGATGGCGCATGCATCGAGAAGC TCCTCCTCCACTGTGCCAGCGCCTTAGAGAGCAACAACATCACCTTAGCTCAACAAGTCATGTGGGTCCTCAACAACGTC GCTTCTCCCCAAGGCGACACCAACCAGCGCCTCACCGCGTGGTTTCTCAGAGCACTAATCTCCAGAGCTTCAAGAATTTG CCCCTCCGTGATGAGTTTCAAGGGAAGCAATAACATTCCTAGGAGGTCAATGACCGTGACCGAGCTAACAGGGTATGTGG ATCTCATTCCATGGCACAGGTTCGGGTTTTGTGCATCAAACAATGAAATTCTCAAAGCTGTTACAGGGTTTCAAAGGGTA CATGTTCTTGATTTCAGCATAACCCCTTGTATGCAATGGCCTACTTTTATAGATGCATTAGCTAAAAGACCAGAAGGTCC TCCTTCACTTAGAATCACAGTTCCATCTTTTAGGCCACAGGTTCCTCCATTAGTCAACATTTCAATACATGAAGTTGGGT TACGCTTAGGTAATTTCGCCAAATTCAGAGATGTCCCTTTTGAATTTCATGTCATAGGAGATGAAAATTTACTACCATCA GAACAATTGAGCAATGAATCAACCAGATTTCAATTTGAGTCCTTGTTGAGTCTATTGAATCCTAGTGTGTTAAACATTAG GGAAGATGAAGCATTGGTGATCAATTGCCAAAATTGGCTACGTTACTTGTCTGATGATAATAGAAATTCAAATTCCCTTA GGGATGCTTTTCTGAGTTTAATTAAAGGTCTTAGCCCTCAAATTGTGCTCTTGGTTGATGAGGATTGTGATCTCAGTGCG TCGAGCCTCGTGTCGAGAATCACCGCTTGTTTCAACCATCTGTGGATACCCTTTGATGCACTGGACACTTTTTTGCCTAA GGATAGTTCTCAGAGGACAGAGTTTGAGTCTGACATAGGACAGAAAATTGAGAACATCATAGGGTTTGAAGGTTATCAGA GAATAGAGAGATTGGAGTCTGGGGTGAAGATGTCACAAAGAATGAAGAATTCAGGGTACTTCAGTGTTCCATTTTGTGAC GGAACTGTTAAGGAAGTTAAGGGTTTGCTTGATGAACATGCCGGTGGATGGGGGATGAAGAGGGATGAAGGTATGTTGGT TCTCACGTGGAAGGGAAACAGCTGTGTATTTGCGACAGCTTGGGTCCCTAGTGAAATGAGGGATCATGTTGGTATGGATG CAACTCTATCTTAA
CDS sequence (LotjaGi3g1v0193300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGCAGAGCTAAAGCCACCAACCTCCATCTCCTTCCAAAACCCCACCACCACCCCTCTCTTCAACACACCCCACAC TAGTACTCCCCTCTCAGGAGCACTCAAAGGTTGTCTTGGAAGCCTTGATGGCGCATGCATCGAGAAGCTCCTCCTCCACT GTGCCAGCGCCTTAGAGAGCAACAACATCACCTTAGCTCAACAAGTCATGTGGGTCCTCAACAACGTCGCTTCTCCCCAA GGCGACACCAACCAGCGCCTCACCGCGTGGTTTCTCAGAGCACTAATCTCCAGAGCTTCAAGAATTTGCCCCTCCGTGAT GAGTTTCAAGGGAAGCAATAACATTCCTAGGAGGTCAATGACCGTGACCGAGCTAACAGGGGAAGATGAAGCATTGGTGA TCAATTGCCAAAATTGGCTACGTTACTTGTCTGATGATAATAGAAATTCAAATTCCCTTAGGGATGCTTTTCTGAGTTTA ATTAAAGGTCTTAGCCCTCAAATTGTGCTCTTGGTTGATGAGGATTGTGATCTCAGTGCGTCGAGCCTCGTGTCGAGAAT CACCGCTTGTTTCAACCATCTGTGGATACCCTTTGATGCACTGGACACTTTTTTGCCTAAGGATAGTTCTCAGAGGACAG AGTTTGAGTCTGACATAGGACAGAAAATTGAGAACATCATAGGGTTTGAAGGTTATCAGAGAATAGAGAGATTGGAGTCT GGGGTGAAGATGTCACAAAGAATGAAGAATTCAGGGTACTTCAGTGTTCCATTTTGTGACGGAACTGTTAAGGAAGTTAA GGGTTTGCTTGATGAACATGCCGGTGGATGGGGGATGAAGAGGGATGAAGGTATGTTGGTTCTCACGTGGAAGGGAAACA GCTGTGTATTTGCGACAGCTTGGGTCCCTAGTGAAATGAGGGATCATGTTGGTATGGATGCAACTCTATCTTAA
Protein sequence (LotjaGi3g1v0193300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKAELKPPTSISFQNPTTTPLFNTPHTSTPLSGALKGCLGSLDGACIEKLLLHCASALESNNITLAQQVMWVLNNVASPQ GDTNQRLTAWFLRALISRASRICPSVMSFKGSNNIPRRSMTVTELTGEDEALVINCQNWLRYLSDDNRNSNSLRDAFLSL IKGLSPQIVLLVDEDCDLSASSLVSRITACFNHLWIPFDALDTFLPKDSSQRTEFESDIGQKIENIIGFEGYQRIERLES GVKMSQRMKNSGYFSVPFCDGTVKEVKGLLDEHAGGWGMKRDEGMLVLTWKGNSCVFATAWVPSEMRDHVGMDATLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 3 | 127 | 125 | 9.6E-137 | – | |
| PANTHER | 3 | 127 | 125 | 9.6E-137 | – | |
| MobiDBLite | 8 | 24 | 17 | - | – | |
| ProSiteProfiles | 38 | 302 | 265 | 44.884 | ||
| Pfam | 48 | 110 | 63 | 6.9E-13 | ||
| PANTHER | 128 | 304 | 177 | 9.6E-137 | – | |
| PANTHER | 128 | 304 | 177 | 9.6E-137 | – | |
| Pfam | 128 | 301 | 174 | 8.9E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0193300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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