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LotjaGi3g1v0194100.3

Overview

Field Value
Gene ID LotjaGi3g1v0194100
Transcript ID LotjaGi3g1v0194100.3
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Acyl-CoA dehydrogenase; TAIR: AT3G51840.1 acyl-CoA oxidase 4; Swiss-Prot: sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal; TrEMBL-Plants: tr|I1JLD2|I1JLD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0194100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:28170668..28175317) extracted from Lotus japonicus Gifu genome v1.2.

CTTCTGATAAAAAATTATCACTAATTATGATAGTTATATTGAGCTATTTTGCATTTTAATGGATGCTTTGATTCACACAG AGGATGCTACCAAAAGGGCAATGCCTTCCTATTTTAATTTACCACCACTGGATGTTTCTGCTGCATTTCCACAAGCAACT CCAGCATCTACATTTCCTCCTTGTGGTAAGAAATTTCTATGATAATTTGGTCATTTTAAAAGGGAAAAAATGTTTTCGTA TCTTAAGATCAATCAGGGCTGCAAGCTAAGACTTAAGGATCTGTTTATGTTAGAACCCTAAAAACTAGAAGCCTAGGGAC ATGATATCCTCATTTGTATTCATCATTTATTATTCACCTGGAAGTAATATGGCTTATAGACCAGATCTAGTTGAGGCGCA GAGAGGCAGAGCTTCTCTGCCCCTAATAGGTGGCTTTATCAATTATTAATTTTTCTATTATAAGTCACTAGGCTTCTAAT ACCCTGTTCAACCTTCTGTTCTTCCTAGTATATACTCAGTACTCACAGAATTGGAGCTCTAATAGAGTTCTATAAGATAT CAAATTCATGCCAATTTTCATTCTTTCACACTTGTAAATGATTACTGTAGGCTTCGGAGTCCAGGTAGACTTTTTAATTT AAATATGCTCCTTTCCCCCTTGAAGCTAAAATAGCTCAAGTGGCAAGAGCTGGGGGACATATGGGTTGGGGAGGGGAAGG TCCAGGGATCAAATCCCTGGAGGGGAAATTTGGCCGATCAAAAAAAAAATATCATGTTGATTTTCTGTCATAGTGATAAG GTTGGACATAATACTCTGATGCTATAAGTTTTGATTCACATTCTACATGGTTCCCCCCCCCCCTTTTGTCCATATTGAAT GGCTTGGAAAGTTGGTATTTTTTGCGGATATTTTGATTGAAAGAAGACATGCTTCAGGAATTTATGTCCATTTTACCTCT CTTGATGTTTGAAAACTCCAGCTTCAGATTATTTTCAATTTGATGACTTGCTGACACCAGAGGAGCAGGCCATCAAGAAG AAAGTTAGAGAGTGTATGGAAAAAAATATTGCTCCAATAATGACCGAGGTATGTTTCTGCGATGCTATCATGCTATTACT GTTTGGACGCAAATTAGTGCAATATAAAATTGTTGATGTTATCTCTTTTCTTATTTCAATCACACCATCTCATTGCTTTT ATGTTTTTTCGTCAGTATTGGGAGAAGGCCAAGTTCCCATTTCATGTTATTCCAAAGCTTGGTGCATTGCGTATTGCTGG TGGCACAATCAAGGTTCGCTCTGCATATTTTCCTATATTATTTTAAGGTATTACATAAGGTCAAGGGAGTTATGAGCAAG CTCTGATTCTCAGGGTTACGGTTGTCCCGGTCTTTCTATAACTGGAAGTGCTATAGCTATTGCAGAAGTTGCAAGGGTTG ATGCAAGCTGTTCAACTTTTATTTTGGTCCATTCATCCTTGGCAATGCTCACTATTGGTAGTACCTTTGTTTCTCAATAA TCATTCTCTAAATATTGTTTCATATATATTGAATGGATTTCTGTCAGTAGTTCCTGATATTTTTTTAACTTTTGATTAAC TGTCAAGTTTAGCATTGTGTGGATCAGAAGCTCAGAAGGAAAAATATCTGCCTTCGCTGGCACAGTTAGAAACTATAGCA TGTTGGGTAAATTGCCTATCTTAGAATTGATTTGTTTTGCATTTTTTCTGAAGTAGCACTTCTCAAAGTAGGTTATTTTC TTAACATTAGGCTTTGACTGAACCTGACTATGGAAGTGATGCCAGTGCTTTGAAGACCACTGCAACTAAGGTGCTTCGCT CTTTGTGTTTTATTTTCTATTTGCTTCTTCAGCTAGATGCATTTTGCTTTTTTTCGACTTATTTGTCTTTTTAATTAGTC ATATTGTCACTTTGCGCAATGGTTCCGAAGTTCAATAGTGCTGATGTTCTTGTCTTGCTTTGCTTTGAAATAATCAGGTA GAAGGAGGTTGGATCCTGGAGGGCCAAAAGCGGTGGATAGGAAACAGTACATTTGCTGATCTGTTGGTTGTCTTTGCTAG GAATGCGACAACAAATCAGATAAATGGGTTTGTGATATATGTTCTTATTTTCATTATTCAGTCTGTGTGCATATGCAAGC TTATTTATGAATTATTAGCTTATTTATAATAGACAAACTCATCTGATAGCCATGCAGATCCACTTATTTATATTATACTC TTGCTCTGCACACCCCATAACAAAAAAGAGGGAGTGAATGCAATGATTTGATCTGGTAAAAACTAAAATGTTAACCTGAT GGATGCCCATTATGGCCCGTGGAATTCTTTTTCTTTTTTATACATTGGAAGATGGCCCGTGGAATTCTTGCATGCACTAA AAGACCAGTGGGAGAGATTTCTCTGATTATGGGGACACATGAAAGTGAAGAATATCTACAGTCAAAACGAAAGTTTAAAT TACTTAGTACTGTTGAGATATATCCACATATGTTCTGTTATGATAGATTACTGTTATGATATATAACTTGTTAATGGACC TAATAGTCACTAATATAGCCTATAAAAACAACATAGTGAGATTGAAAGCATGTTCTCTGAGTTTATATATTCTGCGTTCC TATTGTATCCTCCTTCACCAGCAATCTTTTAATTACATATTTTTCTTGGATAATATTTCAGATATATTGTAAAAAAGGAT GCACCTGGTTTAACAGTCACAAAAATAGAGAATAAAATTGGACTTAGGATTGTACAAAATGGAGACATTGTTATGAGAAA AGTTTTTGTCTCTGACGAGGACAGAGTAGCAGGTCTTGACTCTTTTCAGGATATAAGTAAGGTAAGGTTATTTATAATGT TTCTCTGCTGTTCTTCCAAAAATGAGTGCGTTAAGTTGGTTTATGTTAATGAAACTTCTATTACCTGATGAAGTAGAAGT AGTAGAGCATATCTCAACATTGGTTCTTGCATCTTCTTTGGGGCAGTGTTTGCACCTTCGTACTGTTTTGCAATTTTCTT TAGGTTATGGAAAAGATCATTCTCTGTCAAATTGTCAAGTTCTGCAGCCTAACTATTTACTTTTTCCTTTCTCCATGTAG TAGTTGCTCCGACAAAAAAGCCTAGAAAATTGTATGCATGGTATAATTTGAGACGTATTGTGGAATGTTTAGACGATAGA CGTTGAAATTAAACCTGTTGCTGTAAATTGTAATATTGTATTTGTCTGATGAATAGAGTTTACTTGCAGTTGCTTGGATG AGAACCTATGTATGTTCCTGATGGATATTTTTTCTCTTTGTAGCATTAATAGCATTAGAGGTAGCAAAGTATAAGTGGAA TCCTGAGGAATGGATTGCTCCCCTTTTGTTTTAGCTTTAAATTCCACATATATATGTCCTAAATCCTCTCAGTACGGATT GTTGTGAAGATTGAACAAATTTGGTTAAGAGCTTAGATGCAATTATAACTCTTGCATTAATCTTTATAGCTTCAATTAAT TTTTTTCCTTTTAAGGGTCATCTTTCAAGCATACTTGATTTATACATTATCAATTTATCATTACTTATAGTTTTAAGTCC TCATTAAACAGGTACTTGCTGTTTCACGAGTAATGGTTGCTTGGCAACCTATTGGTATATCAATGGGCATCTACGACATG TGTCATAGGTATTTTTAATTAGAATGTTATTATACTTGAGCTTTTTCTGCAAATCATTTCTGAATTTGGAGTGGCTAAAA GGTATCTAAAGGAGAGGAAACAGTTTGGAGCACCATTAGCAGCTTTCCAAATCAACCAACAGAAACTTGTCCAGATGCTC GGTAATATTCAAGCTATGATTCTTGTTGGCTGGCGCCTTTGCAAATTGTATGAGACTGGTAAAATGACTGTAGGTCAGGC TAGCTCGGGAAAGGTAGTTTCGTATATCACATTTGTAACCCCCTGTTAATTTATAAGAAATACTAGTAACCTACTCTCTT TGATCTTCTATTGGTTGAAATTCATGTGAGGTCTATAAAATTGTCTTGGTCTCACTCCTAATTTGATCAGTCTCGCTCAA ATTTTGGTGTCCCATATGAATTTTAATCAATAGGTGGGAATGTGTTGATAAAAAAATATGTTACTGGAACTTCTCCTTAT CAAGAAAAGCAGTTTCACTGTGGTAGATGCCTGCTAATGAAGTTTGCCATCACTTTTCAGTCATGGATCACCTTGAGAGC AAGAGAAACAGCTGCTCTAGGGAGAGAATTGCTCGGTGGCAATGGTATTTTGGCTGATTTTCTTGTGGCAAAGGTATGAG TAATTCCTGAATCAAGATTTCTTTTGTTGAACCACCAATCTGATCAAAGATAAAATTGGGTTATGGATATTCATGCTAAT GAGTGATCATCTAGCTTAACTATAATTTATAGATTCCTGAATAATACTTTCCATTGCTTTGCTGCTAATTGGCTATTAAT GTTCATTTGTTCTCTAACATTTGTTTTTCTTCCTTCTTTTGCAGGCATTCTGTGATTTAGAACCCATCTATACCTATGAA GGCACTTATGATATTAACACCTTAGTTACAGGCAGGGAAATTACTGGTTTTGCCAGCTTTAAGCCAGTTCCCCAAAGAAG TCGAATGTGA 

CDS sequence (LotjaGi3g1v0194100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGCTTTGATTCACACAGAGGATGCTACCAAAAGGGCAATGCCTTCCTATTTTAATTTACCACCACTGGATGTTTC TGCTGCATTTCCACAAGCAACTCCAGCATCTACATTTCCTCCTTGTGCTTCAGATTATTTTCAATTTGATGACTTGCTGA CACCAGAGGAGCAGGCCATCAAGAAGAAAGTTAGAGAGTGTATGGAAAAAAATATTGCTCCAATAATGACCGAGTATTGG GAGAAGGCCAAGTTCCCATTTCATGTTATTCCAAAGCTTGGTGCATTGCGTATTGCTGGTGGCACAATCAAGGGTTACGG TTGTCCCGGTCTTTCTATAACTGGAAGTGCTATAGCTATTGCAGAAGTTGCAAGGGTTGATGCAAGCTGTTCAACTTTTA TTTTGGTCCATTCATCCTTGGCAATGCTCACTATTGCATTGTGTGGATCAGAAGCTCAGAAGGAAAAATATCTGCCTTCG CTGGCACAGTTAGAAACTATAGCATGTTGGGCTTTGACTGAACCTGACTATGGAAGTGATGCCAGTGCTTTGAAGACCAC TGCAACTAAGGTAGAAGGAGGTTGGATCCTGGAGGGCCAAAAGCGGTGGATAGGAAACAGTACATTTGCTGATCTGTTGG TTGTCTTTGCTAGGAATGCGACAACAAATCAGATAAATGGATATATTGTAAAAAAGGATGCACCTGGTTTAACAGTCACA AAAATAGAGAATAAAATTGGACTTAGGATTGTACAAAATGGAGACATTGTTATGAGAAAAGTTTTTGTCTCTGACGAGGA CAGAGTAGCAGGTCTTGACTCTTTTCAGGATATAAGTAAGGTACTTGCTGTTTCACGAGTAATGGTTGCTTGGCAACCTA TTGGTATATCAATGGGCATCTACGACATGTGTCATAGGTATCTAAAGGAGAGGAAACAGTTTGGAGCACCATTAGCAGCT TTCCAAATCAACCAACAGAAACTTGTCCAGATGCTCGGTAATATTCAAGCTATGATTCTTGTTGGCTGGCGCCTTTGCAA ATTGTATGAGACTGGTAAAATGACTGTAGGTCAGGCTAGCTCGGGAAAGTCATGGATCACCTTGAGAGCAAGAGAAACAG CTGCTCTAGGGAGAGAATTGCTCGGTGGCAATGGTATTTTGGCTGATTTTCTTGTGGCAAAGGCATTCTGTGATTTAGAA CCCATCTATACCTATGAAGGCACTTATGATATTAACACCTTAGTTACAGGCAGGGAAATTACTGGTTTTGCCAGCTTTAA GCCAGTTCCCCAAAGAAGTCGAATGTGA 

Protein sequence (LotjaGi3g1v0194100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDALIHTEDATKRAMPSYFNLPPLDVSAAFPQATPASTFPPCASDYFQFDDLLTPEEQAIKKKVRECMEKNIAPIMTEYW EKAKFPFHVIPKLGALRIAGGTIKGYGCPGLSITGSAIAIAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKEKYLPS LAQLETIACWALTEPDYGSDASALKTTATKVEGGWILEGQKRWIGNSTFADLLVVFARNATTNQINGYIVKKDAPGLTVT KIENKIGLRIVQNGDIVMRKVFVSDEDRVAGLDSFQDISKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAA FQINQQKLVQMLGNIQAMILVGWRLCKLYETGKMTVGQASSGKSWITLRARETAALGRELLGGNGILADFLVAKAFCDLE PIYTYEGTYDINTLVTGREITGFASFKPVPQRSRM 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 8 433 426 3.8E-263
PANTHER 8 433 426 3.8E-263
Gene3D 34 167 134 9.9E-39
SUPERFAMILY 44 272 229 1.7E-61
Pfam 54 163 110 1.6E-23
Gene3D 168 273 106 3.6E-32
Pfam 169 261 93 8.9E-23
Gene3D 275 435 161 1.4E-37
SUPERFAMILY 275 423 149 6.77E-33
Pfam 278 419 142 1.4E-22
ProSitePatterns 379 398 20 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Acyl-CoA dehydrogenase activity Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor.
Molecular function Oxidoreductase activity, acting on the CH-CH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
Molecular function Flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0194100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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