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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0194100 |
| Transcript ID | LotjaGi3g1v0194100.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acyl-CoA dehydrogenase; TAIR: AT3G51840.1 acyl-CoA oxidase 4; Swiss-Prot: sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal; TrEMBL-Plants: tr|I1JLD3|I1JLD3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0194100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:28171832..28175317) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTCTTATTTCAATCACACCATCTCATTGCTTTTATGTTTTTTCGTCAGTATTGGGAGAAGGCCAAGTTCCCATTTCA TGTTATTCCAAAGCTTGGTGCATTGCGTATTGCTGGTGGCACAATCAAGGTTCGCTCTGCATATTTTCCTATATTATTTT AAGGTATTACATAAGGTCAAGGGAGTTATGAGCAAGCTCTGATTCTCAGGGTTACGGTTGTCCCGGTCTTTCTATAACTG GAAGTGCTATAGCTATTGCAGAAGTTGCAAGGGTTGATGCAAGCTGTTCAACTTTTATTTTGGTCCATTCATCCTTGGCA ATGCTCACTATTGGTAGTACCTTTGTTTCTCAATAATCATTCTCTAAATATTGTTTCATATATATTGAATGGATTTCTGT CAGTAGTTCCTGATATTTTTTTAACTTTTGATTAACTGTCAAGTTTAGCATTGTGTGGATCAGAAGCTCAGAAGGAAAAA TATCTGCCTTCGCTGGCACAGTTAGAAACTATAGCATGTTGGGTAAATTGCCTATCTTAGAATTGATTTGTTTTGCATTT TTTCTGAAGTAGCACTTCTCAAAGTAGGTTATTTTCTTAACATTAGGCTTTGACTGAACCTGACTATGGAAGTGATGCCA GTGCTTTGAAGACCACTGCAACTAAGGTGCTTCGCTCTTTGTGTTTTATTTTCTATTTGCTTCTTCAGCTAGATGCATTT TGCTTTTTTTCGACTTATTTGTCTTTTTAATTAGTCATATTGTCACTTTGCGCAATGGTTCCGAAGTTCAATAGTGCTGA TGTTCTTGTCTTGCTTTGCTTTGAAATAATCAGGTAGAAGGAGGTTGGATCCTGGAGGGCCAAAAGCGGTGGATAGGAAA CAGTACATTTGCTGATCTGTTGGTTGTCTTTGCTAGGAATGCGACAACAAATCAGATAAATGGGTTTGTGATATATGTTC TTATTTTCATTATTCAGTCTGTGTGCATATGCAAGCTTATTTATGAATTATTAGCTTATTTATAATAGACAAACTCATCT GATAGCCATGCAGATCCACTTATTTATATTATACTCTTGCTCTGCACACCCCATAACAAAAAAGAGGGAGTGAATGCAAT GATTTGATCTGGTAAAAACTAAAATGTTAACCTGATGGATGCCCATTATGGCCCGTGGAATTCTTTTTCTTTTTTATACA TTGGAAGATGGCCCGTGGAATTCTTGCATGCACTAAAAGACCAGTGGGAGAGATTTCTCTGATTATGGGGACACATGAAA GTGAAGAATATCTACAGTCAAAACGAAAGTTTAAATTACTTAGTACTGTTGAGATATATCCACATATGTTCTGTTATGAT AGATTACTGTTATGATATATAACTTGTTAATGGACCTAATAGTCACTAATATAGCCTATAAAAACAACATAGTGAGATTG AAAGCATGTTCTCTGAGTTTATATATTCTGCGTTCCTATTGTATCCTCCTTCACCAGCAATCTTTTAATTACATATTTTT CTTGGATAATATTTCAGATATATTGTAAAAAAGGATGCACCTGGTTTAACAGTCACAAAAATAGAGAATAAAATTGGACT TAGGATTGTACAAAATGGAGACATTGTTATGAGAAAAGTTTTTGTCTCTGACGAGGACAGAGTAGCAGGTCTTGACTCTT TTCAGGATATAAGTAAGGTAAGGTTATTTATAATGTTTCTCTGCTGTTCTTCCAAAAATGAGTGCGTTAAGTTGGTTTAT GTTAATGAAACTTCTATTACCTGATGAAGTAGAAGTAGTAGAGCATATCTCAACATTGGTTCTTGCATCTTCTTTGGGGC AGTGTTTGCACCTTCGTACTGTTTTGCAATTTTCTTTAGGTTATGGAAAAGATCATTCTCTGTCAAATTGTCAAGTTCTG CAGCCTAACTATTTACTTTTTCCTTTCTCCATGTAGTAGTTGCTCCGACAAAAAAGCCTAGAAAATTGTATGCATGGTAT AATTTGAGACGTATTGTGGAATGTTTAGACGATAGACGTTGAAATTAAACCTGTTGCTGTAAATTGTAATATTGTATTTG TCTGATGAATAGAGTTTACTTGCAGTTGCTTGGATGAGAACCTATGTATGTTCCTGATGGATATTTTTTCTCTTTGTAGC ATTAATAGCATTAGAGGTAGCAAAGTATAAGTGGAATCCTGAGGAATGGATTGCTCCCCTTTTGTTTTAGCTTTAAATTC CACATATATATGTCCTAAATCCTCTCAGTACGGATTGTTGTGAAGATTGAACAAATTTGGTTAAGAGCTTAGATGCAATT ATAACTCTTGCATTAATCTTTATAGCTTCAATTAATTTTTTTCCTTTTAAGGGTCATCTTTCAAGCATACTTGATTTATA CATTATCAATTTATCATTACTTATAGTTTTAAGTCCTCATTAAACAGGTACTTGCTGTTTCACGAGTAATGGTTGCTTGG CAACCTATTGGTATATCAATGGGCATCTACGACATGTGTCATAGGTATTTTTAATTAGAATGTTATTATACTTGAGCTTT TTCTGCAAATCATTTCTGAATTTGGAGTGGCTAAAAGGTATCTAAAGGAGAGGAAACAGTTTGGAGCACCATTAGCAGCT TTCCAAATCAACCAACAGAAACTTGTCCAGATGCTCGGTAATATTCAAGCTATGATTCTTGTTGGCTGGCGCCTTTGCAA ATTGTATGAGACTGGTAAAATGACTGTAGGTCAGGCTAGCTCGGGAAAGGTAGTTTCGTATATCACATTTGTAACCCCCT GTTAATTTATAAGAAATACTAGTAACCTACTCTCTTTGATCTTCTATTGGTTGAAATTCATGTGAGGTCTATAAAATTGT CTTGGTCTCACTCCTAATTTGATCAGTCTCGCTCAAATTTTGGTGTCCCATATGAATTTTAATCAATAGGTGGGAATGTG TTGATAAAAAAATATGTTACTGGAACTTCTCCTTATCAAGAAAAGCAGTTTCACTGTGGTAGATGCCTGCTAATGAAGTT TGCCATCACTTTTCAGTCATGGATCACCTTGAGAGCAAGAGAAACAGCTGCTCTAGGGAGAGAATTGCTCGGTGGCAATG GTATTTTGGCTGATTTTCTTGTGGCAAAGGTATGAGTAATTCCTGAATCAAGATTTCTTTTGTTGAACCACCAATCTGAT CAAAGATAAAATTGGGTTATGGATATTCATGCTAATGAGTGATCATCTAGCTTAACTATAATTTATAGATTCCTGAATAA TACTTTCCATTGCTTTGCTGCTAATTGGCTATTAATGTTCATTTGTTCTCTAACATTTGTTTTTCTTCCTTCTTTTGCAG GCATTCTGTGATTTAGAACCCATCTATACCTATGAAGGCACTTATGATATTAACACCTTAGTTACAGGCAGGGAAATTAC TGGTTTTGCCAGCTTTAAGCCAGTTCCCCAAAGAAGTCGAATGTGA
CDS sequence (LotjaGi3g1v0194100.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTTTCGTCAGTATTGGGAGAAGGCCAAGTTCCCATTTCATGTTATTCCAAAGCTTGGTGCATTGCGTATTGCTGG TGGCACAATCAAGGGTTACGGTTGTCCCGGTCTTTCTATAACTGGAAGTGCTATAGCTATTGCAGAAGTTGCAAGGGTTG ATGCAAGCTGTTCAACTTTTATTTTGGTCCATTCATCCTTGGCAATGCTCACTATTGCATTGTGTGGATCAGAAGCTCAG AAGGAAAAATATCTGCCTTCGCTGGCACAGTTAGAAACTATAGCATGTTGGGCTTTGACTGAACCTGACTATGGAAGTGA TGCCAGTGCTTTGAAGACCACTGCAACTAAGGTAGAAGGAGGTTGGATCCTGGAGGGCCAAAAGCGGTGGATAGGAAACA GTACATTTGCTGATCTGTTGGTTGTCTTTGCTAGGAATGCGACAACAAATCAGATAAATGGATATATTGTAAAAAAGGAT GCACCTGGTTTAACAGTCACAAAAATAGAGAATAAAATTGGACTTAGGATTGTACAAAATGGAGACATTGTTATGAGAAA AGTTTTTGTCTCTGACGAGGACAGAGTAGCAGGTCTTGACTCTTTTCAGGATATAAGTAAGGTACTTGCTGTTTCACGAG TAATGGTTGCTTGGCAACCTATTGGTATATCAATGGGCATCTACGACATGTGTCATAGGTATCTAAAGGAGAGGAAACAG TTTGGAGCACCATTAGCAGCTTTCCAAATCAACCAACAGAAACTTGTCCAGATGCTCGGTAATATTCAAGCTATGATTCT TGTTGGCTGGCGCCTTTGCAAATTGTATGAGACTGGTAAAATGACTGTAGGTCAGGCTAGCTCGGGAAAGTCATGGATCA CCTTGAGAGCAAGAGAAACAGCTGCTCTAGGGAGAGAATTGCTCGGTGGCAATGGTATTTTGGCTGATTTTCTTGTGGCA AAGGCATTCTGTGATTTAGAACCCATCTATACCTATGAAGGCACTTATGATATTAACACCTTAGTTACAGGCAGGGAAAT TACTGGTTTTGCCAGCTTTAAGCCAGTTCCCCAAAGAAGTCGAATGTGA
Protein sequence (LotjaGi3g1v0194100.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFFRQYWEKAKFPFHVIPKLGALRIAGGTIKGYGCPGLSITGSAIAIAEVARVDASCSTFILVHSSLAMLTIALCGSEAQ KEKYLPSLAQLETIACWALTEPDYGSDASALKTTATKVEGGWILEGQKRWIGNSTFADLLVVFARNATTNQINGYIVKKD APGLTVTKIENKIGLRIVQNGDIVMRKVFVSDEDRVAGLDSFQDISKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQ FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYETGKMTVGQASSGKSWITLRARETAALGRELLGGNGILADFLVA KAFCDLEPIYTYEGTYDINTLVTGREITGFASFKPVPQRSRM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 94 | 93 | 8.7E-24 | ||
| SUPERFAMILY | 4 | 199 | 196 | 1.57E-53 | ||
| PANTHER | 4 | 360 | 357 | 1.3E-225 | – | |
| PANTHER | 4 | 360 | 357 | 1.3E-225 | – | |
| Pfam | 6 | 90 | 85 | 5.3E-16 | ||
| Gene3D | 95 | 200 | 106 | 2.6E-32 | – | |
| Pfam | 96 | 188 | 93 | 6.4E-23 | ||
| Gene3D | 202 | 362 | 161 | 9.2E-38 | – | |
| SUPERFAMILY | 202 | 350 | 149 | 4.51E-33 | ||
| Pfam | 205 | 346 | 142 | 9.6E-23 | ||
| ProSitePatterns | 306 | 325 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Acyl-CoA dehydrogenase activity | Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-CH group of donors | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0194100.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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