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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0196500 |
| Transcript ID | LotjaGi3g1v0196500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ammonium transporter; TAIR: AT2G38290.1 ammonium transporter 2; Swiss-Prot: sp|Q84KJ7|AMT21_ORYSJ Ammonium transporter 2 member 1; TrEMBL-Plants: tr|Q93X02|Q93X02_LOTJA Ammonium transporter; Found in the gene: LotjaGi3g1v0196500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:28608698..28610669) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAACTCCCACAGCTTACCAAGAAAACCTTCCAGCATCACCAGAATGGCTAAACAAAGGAGACAACGCATGGCAAAT GACAGCAGCAACTCTGGTTGGCCTCCAAAGCATGCCAGGCCTAGTGATTCTCTATGCCAGCATAGTCAAAAAGAAATGGG CAGTGAACTCTGCTTTCATGGCCCTCTATGCTTTCGCAGCGGTTCTCTTATGTTGGGTCCTTTTGTGTTACCGTATGGCA TTTGGAGACAAGCTTTTCCCTTTCTGGGGAAAGGGTGCACCAGCACTAGGCCAGAAATTTCTCATAAACCAAGCCAGTGT CCCTGAAAGCACACACTACTTCAACAATGGTTCCATTGAAACCCAAACTCAAAGGCCTTTTTATCCCATGGCTACTCTTG TGTATTTCCAGTTCAATTTTGCTGCTATTACAATGATTTTGCTGGCTGGATCTGTGCTTGGCAGAATGAACATCAAGGCT TGGATGGCTTTTGTTCCTCTCTGGCTCATTTTCTCATACACTGTTGGGGCATTTAGTATTTGGGGTGGTGGTTTTCTGTA CCACTGGGGTGTCATCGATTTTTCTGGTGGCTATGTCATCCATCTTTCCTCTGGAATCGCCGGTTTCACTGCCGCTTACT GGGTAAGTACATACAAATATTTCGACTATAGCTAGTAGCTACCATGGGATTAGGATTCTCTCATGTAAAAAATTCTTTAT ATTGTAATTTAGTGATTATCTGCTTCTTCAACTATTGCTACCATCATGTTTTAGGGAGGAAGATCTTCTCTGCATTTCGT GTCTAATTCCCTAGACCACCAATCAAATTTTGATATGTTGAGTATAACAATTAAAATCTTTAAATGACATTACACAGTTT GATTAGTGAGACAGAGTGAAACACTAAATGGGAACATAGTATTTCAGTTCATATTTCATTTGACATTATCATATGACTTG AGAGTATCATAATTCTGTTGCTGCAGTCACAATCATATAAGAACATTACCATATTTGGAGTTATAGAAAATGATAGACAA ACACCAATTATGGAGCCACTGAAGAAGATAGGACAATTGCATGCCACAATTTATAGTGATAACTTAGATATTCTTCACAA TTAATCCTCTTTATCAAGTAGAACTATTTTAACAAAATATTGCATAAATGAGTTAGCATGTTTCTGGCACATTCCATATT TGGAGTTATAGAAAATGATAGACAAATACCAATTATTGAGCCACTGAAGAAGATAGGACAATTGCATGCCACAATTTATT CTGATAACATAGATATTCTTCACAATTAATCCTCTTTATCAAGTAGAACTATTTTAACAAAATATTGCATAAATGAATTA GCATGTTTCTGGCACATTCAGATCTGTTTTTCTTTTATCGAAATCAATTTTGTTAATCACAAGCTAATTATAGTAAATCC TCCCCATAATTGATTAAGACTTCAAAATCACAAGGATTTCCAAAAGTATGCCTTCACTGAATTGGATACAAATTCTGTTT TTCTTTTGGCATAGCACTACTCTAAGTCTAATCTCATACTTTTCCTCAAAATCTTAAATGCTAATTAATGAATTTTGTTG TTAGGTTGGACCAAGGTTAAAGAGTGACAGGGAGAGGTTCCCACCAAACAATGTGTTGCTTATGCTAGCGGGTGCTGGGT TGCTGTGGATGGGTTGGTCAGGGTTCAATGGAGGAGCACCATATGCAGCCAACATTGATGCTTCTATTGCTGTGCTCAAC ACTAACATATGTGCAGCCACTAGCCTCCTTGTCTGGACCTCTCTGGATGTTGCCTTCTTCGGCAAGCCTTCAGTCATCGG TGCCGTTCAGGGCATGATGACCGGGCTTGTTTGCATCACCCCCGGAGCAGGTACGCATGTTCTCAAAAACTAATTATAAA TTGCAGTTGTGGTTGTTTTGTCAAAAATTAGCTTATGTTTTCTCAGAATTAA
CDS sequence (LotjaGi3g1v0196500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACTCCCACAGCTTACCAAGAAAACCTTCCAGCATCACCAGAATGGCTAAACAAAGGAGACAACGCATGGCAAAT GACAGCAGCAACTCTGGTTGGCCTCCAAAGCATGCCAGGCCTAGTGATTCTCTATGCCAGCATAGTCAAAAAGAAATGGG CAGTGAACTCTGCTTTCATGGCCCTCTATGCTTTCGCAGCGGTTCTCTTATGTTGGGTCCTTTTGTGTTACCGTATGGCA TTTGGAGACAAGCTTTTCCCTTTCTGGGGAAAGGGTGCACCAGCACTAGGCCAGAAATTTCTCATAAACCAAGCCAGTGT CCCTGAAAGCACACACTACTTCAACAATGGTTCCATTGAAACCCAAACTCAAAGGCCTTTTTATCCCATGGCTACTCTTG TGTATTTCCAGTTCAATTTTGCTGCTATTACAATGATTTTGCTGGCTGGATCTGTGCTTGGCAGAATGAACATCAAGGCT TGGATGGCTTTTGTTCCTCTCTGGCTCATTTTCTCATACACTGTTGGGGCATTTAGTATTTGGGGTGGTGGTTTTCTGTA CCACTGGGGTGTCATCGATTTTTCTGGTGGCTATGTCATCCATCTTTCCTCTGGAATCGCCGGTTTCACTGCCGCTTACT GGGTTGGACCAAGGTTAAAGAGTGACAGGGAGAGGTTCCCACCAAACAATGTGTTGCTTATGCTAGCGGGTGCTGGGTTG CTGTGGATGGGTTGGTCAGGGTTCAATGGAGGAGCACCATATGCAGCCAACATTGATGCTTCTATTGCTGTGCTCAACAC TAACATATGTGCAGCCACTAGCCTCCTTGTCTGGACCTCTCTGGATGTTGCCTTCTTCGGCAAGCCTTCAGTCATCGGTG CCGTTCAGGGCATGATGACCGGGCTTGTTTGCATCACCCCCGGAGCAGGTACGCATGTTCTCAAAAACTAA
Protein sequence (LotjaGi3g1v0196500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATPTAYQENLPASPEWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLLCWVLLCYRMA FGDKLFPFWGKGAPALGQKFLINQASVPESTHYFNNGSIETQTQRPFYPMATLVYFQFNFAAITMILLAGSVLGRMNIKA WMAFVPLWLIFSYTVGAFSIWGGGFLYHWGVIDFSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLAGAGL LWMGWSGFNGGAPYAANIDASIAVLNTNICAATSLLVWTSLDVAFFGKPSVIGAVQGMMTGLVCITPGAGTHVLKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 310 | 310 | 1.1E-203 | – | |
| PANTHER | 1 | 310 | 310 | 1.1E-203 | – | |
| Gene3D | 2 | 314 | 313 | 6.7E-85 | ||
| SUPERFAMILY | 17 | 311 | 295 | 1.06E-73 | – | |
| Pfam | 24 | 310 | 287 | 1.2E-50 | ||
| Phobius | 24 | 46 | 23 | - | – | |
| TMHMM | 24 | 46 | 23 | - | – | |
| Phobius | 47 | 57 | 11 | - | – | |
| Phobius | 58 | 80 | 23 | - | – | |
| TMHMM | 59 | 81 | 23 | - | – | |
| Phobius | 81 | 133 | 53 | - | – | |
| TMHMM | 131 | 153 | 23 | - | – | |
| Phobius | 134 | 153 | 20 | - | – | |
| Phobius | 154 | 164 | 11 | - | – | |
| TMHMM | 160 | 182 | 23 | - | – | |
| Phobius | 165 | 186 | 22 | - | – | |
| Phobius | 187 | 197 | 11 | - | – | |
| ProSitePatterns | 193 | 218 | 26 | - | ||
| TMHMM | 197 | 216 | 20 | - | – | |
| Phobius | 198 | 216 | 19 | - | – | |
| Phobius | 217 | 227 | 11 | - | – | |
| Phobius | 228 | 248 | 21 | - | – | |
| TMHMM | 229 | 248 | 20 | - | – | |
| Phobius | 249 | 259 | 11 | - | – | |
| Phobius | 260 | 279 | 20 | - | – | |
| Phobius | 280 | 290 | 11 | - | – | |
| Phobius | 291 | 310 | 20 | - | – | |
| TMHMM | 292 | 314 | 23 | - | – | |
| Phobius | 311 | 316 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ammonium transmembrane transporter activity | Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. | ||
| Biological process | Ammonium transport | The directed movement of ammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Ammonium transmembrane transport | The process in which ammonium is transported across a membrane. Ammonium is the cation NH4+. |
Expression pattern of LotjaGi3g1v0196500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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