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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR018047
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We have found 26 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.535s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0038059.1
n.a. PREDICTED: ammonium transporter 1 member 3-like [Cicer arietinum] gi|502129282|ref|XP_004500249.1| chr0 12309879 12311854 +
2 domain predictions
3 GO terms
Lj0g3v0050279.1
n.a. Ammonium transporter 3 member [Medicago truncatula] gi|357520195|ref|XP_003630386.1| chr0 17081404 17085230 +
2 domain predictions
3 GO terms
Lj0g3v0115479.1
n.a. high affinity ammonium transporter [Lotus japonicus] gi|232782268|gb|ACQ91094.1| chr0 50753025 50755937 -
2 domain predictions
3 GO terms
Lj0g3v0233739.1
n.a. ammonium transporter [Malus hupehensis] gi|373501953|gb|AEY75249.1| chr0 121024373 121025630 +
2 domain predictions
3 GO terms
Lj0g3v0302059.1
n.a. ammonium transporter (AMT1.1) [Lotus japonicus] gi|10637893|emb|CAC10555.1| chr0 157080972 157084289 -
2 domain predictions
3 GO terms
Lj0g3v0336119.1
n.a. PREDICTED: ammonium transporter 2-like [Glycine max] gi|356496235|ref|XP_003516974.1| chr0 176067049 176072576 +
2 domain predictions
3 GO terms
Lj1g3v2372380.1
n.a. Ammonium transporter 3 member [Medicago truncatula] gi|357506079|ref|XP_003623328.1| chr1 27861357 27865569 -
2 domain predictions
3 GO terms
Lj1g3v4528490.1
n.a. high affinity ammonium transporter [Lotus japonicus] gi|46409004|emb|CAE01484.1| chr1 53378617 53380139 -
2 domain predictions
3 GO terms
Lj1g3v4528500.1
n.a. n.a. chr1 53378661 53380139 -
2 domain predictions
3 GO terms
Lj1g3v4959910.1
n.a. PREDICTED: ammonium transporter 3 member 1-like [Glycine max] gi|356571182|ref|XP_003553758.1| chr1 60543967 60548146 +
2 domain predictions
3 GO terms
Lj4g3v2846240.1
n.a. Ammonium transporter 3 member [Medicago truncatula] gi|357520195|ref|XP_003630386.1| chr4 38084217 38088043 -
2 domain predictions
3 GO terms
Lj5g3v1314550.1
n.a. Ammonium transporter [Lotus japonicus] gi|31322044|gb|AAM95453.1| chr5 20420620 20422602 -
2 domain predictions
3 GO terms
Lj5g3v1314560.1
n.a. Ammonium transporter [Lotus japonicus] gi|31322044|gb|AAM95453.1| chr5 20420641 20422197 -
2 domain predictions
3 GO terms
LotjaGi1g1v0444300.1
n.a. Ammonium transporter; TAIR: AT2G38290.1 ammonium transporter 2; Swiss-Prot: sp|Q84KJ6|AMT31_ORYSJ Ammonium transporter 3 member 1; TrEMBL-Plants: tr|G7KSC5|G7KSC5_MEDTR Ammonium transporter; Found in the gene: LotjaGi1g1v0444300 LjG1.1_chr1 94186226 94195172 -
2 domain predictions
3 GO terms
LotjaGi1g1v0444300.2
n.a. Ammonium transporter; TAIR: AT2G38290.1 ammonium transporter 2; Swiss-Prot: sp|Q8S230|AMT22_ORYSJ Ammonium transporter 2 member 2; TrEMBL-Plants: tr|M5VY13|M5VY13_PRUPE Ammonium transporter; Found in the gene: LotjaGi1g1v0444300 LjG1.1_chr1 94192872 94194833 -
2 domain predictions
3 GO terms
LotjaGi1g1v0702700.1
n.a. Ammonium transporter; TAIR: AT4G28700.1 ammonium transporter 1;4; Swiss-Prot: sp|O04161|AMT12_SOLLC Ammonium transporter 1 member 2; TrEMBL-Plants: tr|Q70KK9|Q70KK9_LOTJA Ammonium transporter; Found in the gene: LotjaGi1g1v0702700 LjG1.1_chr1 127109223 127111138 +
2 domain predictions
3 GO terms
LotjaGi1g1v0781000.1
n.a. Ammonium transporter; TAIR: AT2G38290.1 ammonium transporter 2; Swiss-Prot: sp|Q84KJ6|AMT31_ORYSJ Ammonium transporter 3 member 1; TrEMBL-Plants: tr|I1NC92|I1NC92_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0781000 LjG1.1_chr1 135326350 135330731 -
2 domain predictions
3 GO terms
LotjaGi2g1v0018400.1
n.a. Ammonium transporter; TAIR: AT2G38290.1 ammonium transporter 2; Swiss-Prot: sp|Q84KJ6|AMT31_ORYSJ Ammonium transporter 3 member 1; TrEMBL-Plants: tr|C4NY35|C4NY35_LOTJA Ammonium transporter; Found in the gene: LotjaGi2g1v0018400 LjG1.1_chr2 6616142 6618869 -
2 domain predictions
3 GO terms
LotjaGi3g1v0196500.1
n.a. Ammonium transporter; TAIR: AT2G38290.1 ammonium transporter 2; Swiss-Prot: sp|Q84KJ6|AMT31_ORYSJ Ammonium transporter 3 member 1; TrEMBL-Plants: tr|Q93X02|Q93X02_LOTJA Ammonium transporter; Found in the gene: LotjaGi3g1v0196500 LjG1.1_chr3 28594463 28610967 -
2 domain predictions
3 GO terms
LotjaGi3g1v0196500.2
n.a. Ammonium transporter; TAIR: AT2G38290.1 ammonium transporter 2; Swiss-Prot: sp|Q84KJ7|AMT21_ORYSJ Ammonium transporter 2 member 1; TrEMBL-Plants: tr|Q93X02|Q93X02_LOTJA Ammonium transporter; Found in the gene: LotjaGi3g1v0196500 LjG1.1_chr3 28608698 28610669 -
2 domain predictions
3 GO terms
LotjaGi4g1v0414800.1
n.a. Ammonium transporter; TAIR: AT2G38290.1 ammonium transporter 2; Swiss-Prot: sp|Q84KJ6|AMT31_ORYSJ Ammonium transporter 3 member 1; TrEMBL-Plants: tr|A0A151SU70|A0A151SU70_CAJCA Ammonium transporter; Found in the gene: LotjaGi4g1v0414800 LjG1.1_chr4 79032108 79036531 -
2 domain predictions
3 GO terms
LotjaGi5g1v0205600.1
n.a. Ammonium transporter; TAIR: AT1G64780.1 ammonium transporter 1;2; Swiss-Prot: sp|O04161|AMT12_SOLLC Ammonium transporter 1 member 2; TrEMBL-Plants: tr|Q7Y1B9|Q7Y1B9_LOTJA Ammonium transporter; Found in the gene: LotjaGi5g1v0205600 LjG1.1_chr5 50792433 50797139 -
2 domain predictions
3 GO terms
LotjaGi5g1v0205600.2
n.a. Ammonium transporter; TAIR: AT1G64780.1 ammonium transporter 1;2; Swiss-Prot: sp|O04161|AMT12_SOLLC Ammonium transporter 1 member 2; TrEMBL-Plants: tr|Q7Y1B9|Q7Y1B9_LOTJA Ammonium transporter; Found in the gene: LotjaGi5g1v0205600 LjG1.1_chr5 50795121 50796824 -
2 domain predictions
3 GO terms
LotjaGi6g1v0009500.1
n.a. Ammonium transporter; TAIR: AT4G13510.1 ammonium transporter 1;1; Swiss-Prot: sp|P54144|AMT11_ARATH Ammonium transporter 1 member 1; TrEMBL-Plants: tr|Q9FVI4|Q9FVI4_LOTJA Ammonium transporter; Found in the gene: LotjaGi6g1v0009500 LjG1.1_chr6 1773093 1776879 -
2 domain predictions
3 GO terms
LotjaGi6g1v0009500.2
n.a. Ammonium transporter; TAIR: AT4G13510.1 ammonium transporter 1;1; Swiss-Prot: sp|Q6K9G1|AMT12_ORYSJ Ammonium transporter 1 member 2; TrEMBL-Plants: tr|Q9FSH3|Q9FSH3_LOTJA Ammonium transporter; Found in the gene: LotjaGi6g1v0009500 LjG1.1_chr6 1775429 1776079 -
2 domain predictions
3 GO terms
LotjaGi6g1v0115000.1
n.a. Ammonium transporter; TAIR: AT1G64780.1 ammonium transporter 1;2; Swiss-Prot: sp|Q9FVN0|AMT13_SOLLC Ammonium transporter 1 member 3; TrEMBL-Plants: tr|A0A072UXS9|A0A072UXS9_MEDTR Ammonium transporter; Found in the gene: LotjaGi6g1v0115000 LjG1.1_chr6 27462196 27463575 -
2 domain predictions
3 GO terms