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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0200700 |
| Transcript ID | LotjaGi3g1v0200700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dirigent protein; TAIR: AT5G49040.1 Disease resistance-responsive (dirigent-like protein) family protein; Swiss-Prot: sp|Q9FI66|DIR3_ARATH Dirigent protein 3; TrEMBL-Plants: tr|I3SGI6|I3SGI6_LOTJA Dirigent protein; Found in the gene: LotjaGi3g1v0200700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29282734..29284042) extracted from Lotus japonicus Gifu genome v1.2.
AACATACTCTATATTATACAGTGATATACTCTCAATTTAAGGGGCTAAAAACCATATATATAAAATTTTCCAATCAAGGA AAAAAGAAACAATTTTACCACTCTCATTTGTTCCCTTGCACTTTACTCTTTCTCTATTTCTCCATATAAACCACTCACCC TCCATCAACATTTCAATCTCTTCTCTCCAATTTCCATTACAGTTTCCTACTTTCTTAACACCATGAACACCGCCAATATC TTCACCTTCTGTTTCTTCATTCTCCTCTCTTGCCACGCCCTCTCCTCCTCTGCGGCCACCGTAGAAGAAGAAACCTCCGA TTTCGTCCGCCCCATAGACCGCAAGCTACTGGGCCTTCCCAAGAAAGAGAAGCTGAGCCACTTCAAATTCTACTGGCACG ACATAGTTGGCGGAAGAAGTCCCACATCGGTTCCGGTTGTCCCCCCACCTCTGAAGCTGAACTCTACCACTGCCTTTGGC TTGGTCAACATGATCGACAACCCTTTGACACTGGGCCCCACTATGAGTTCCAAGCTTGTGGGAAAGGCTCAAGGGTTCTA TGCCTCTGCTTCACAGAGTGAGATAGGTCTGCTCATGGCCATGAATTTTGCTTTCATTGAAGGGAAGTACAATGGCAGCA CACTCACTATCTTGGGGAGGAACCCTGTTTTCAACAAGGTCAGGGAGATGCCTGTGATTGGTGGAAGTGGATTTTTCAGA TTTGCTAGGGGGTATGCTGAAGCTAGAACTAACTGGTTTGATTTGAAATCTGGGGATGCTGTTGTTGAGTATAATGTTTA TGTTTTCCATTATTGATCATTCATGTTATCATTGTTAGTTAGGATATATTATAAATGCTTCTTGGATTTAGATGCTTCTA CTAATTTTATGTATTCAAGTAATCTGAGTAATTTCACCAAGATGGAATGGTTCATATTTCTTATCATGATTTGGACTCGG CTTAAATAAACTCAAAATTTCAGTCATTCGATTTTGATGCTTGAGCGTCAGAATTTAGGATTGGGAATCCAAATTCATGT TTTTACCTATTTGTTCTTTCTAATTTTTCCTGTTTTTTTTTAGGTCATATAGCTGGTGCTTGTGATGCTTAGCTTTTCCT TTTCAAGAGTTACCGTTTGTCTTCATGCAACCCACCTTTAATTATGGTGTATTAACTTGTGGTTGGTGTGATAATTGGAA TAATTATTTATGTTGTCATTTACTTCAATGGAAGAGGAATCTGATGATAAGAAAAAGGGCATTTTTTAATGTCACTGTTT ATCATCTTTATGGCATTTCATTTTTTTAA
CDS sequence (LotjaGi3g1v0200700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACACCGCCAATATCTTCACCTTCTGTTTCTTCATTCTCCTCTCTTGCCACGCCCTCTCCTCCTCTGCGGCCACCGT AGAAGAAGAAACCTCCGATTTCGTCCGCCCCATAGACCGCAAGCTACTGGGCCTTCCCAAGAAAGAGAAGCTGAGCCACT TCAAATTCTACTGGCACGACATAGTTGGCGGAAGAAGTCCCACATCGGTTCCGGTTGTCCCCCCACCTCTGAAGCTGAAC TCTACCACTGCCTTTGGCTTGGTCAACATGATCGACAACCCTTTGACACTGGGCCCCACTATGAGTTCCAAGCTTGTGGG AAAGGCTCAAGGGTTCTATGCCTCTGCTTCACAGAGTGAGATAGGTCTGCTCATGGCCATGAATTTTGCTTTCATTGAAG GGAAGTACAATGGCAGCACACTCACTATCTTGGGGAGGAACCCTGTTTTCAACAAGGTCAGGGAGATGCCTGTGATTGGT GGAAGTGGATTTTTCAGATTTGCTAGGGGGTATGCTGAAGCTAGAACTAACTGGTTTGATTTGAAATCTGGGGATGCTGT TGTTGAGTATAATGTTTATGTTTTCCATTATTGA
Protein sequence (LotjaGi3g1v0200700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNTANIFTFCFFILLSCHALSSSAATVEEETSDFVRPIDRKLLGLPKKEKLSHFKFYWHDIVGGRSPTSVPVVPPPLKLN STTAFGLVNMIDNPLTLGPTMSSKLVGKAQGFYASASQSEIGLLMAMNFAFIEGKYNGSTLTILGRNPVFNKVREMPVIG GSGFFRFARGYAEARTNWFDLKSGDAVVEYNVYVFHY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 11 | 196 | 186 | 3.7E-93 | – | |
| PANTHER | 11 | 196 | 186 | 3.7E-93 | – | |
| Phobius | 18 | 24 | 7 | - | – | |
| Phobius | 25 | 197 | 173 | - | – | |
| Pfam | 52 | 195 | 144 | 1.3E-55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0200700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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