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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0201100 |
| Transcript ID | LotjaGi3g1v0201100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LINE-1 reverse transcriptase like; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q48F79|ENO_PSE14 Enolase; TrEMBL-Plants: tr|A0A151RWN5|A0A151RWN5_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi3g1v0201100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29323410..29324951) extracted from Lotus japonicus Gifu genome v1.2.
GTCGGCAAATAAAACTTTTAAATTTCAATGAATTTATTCAAATAATAGATAAAATACCTATTTTCAGAATAAATTAAAAG CAACTTCTAATAATGTTATTTCTCAATCTCTGATAGAGAATCTCTAAATCTCACAGTCTTGCTTTTCACCTTCGTCCCCG ATCGCGTCGTTCACCATGTCGATCTCGACCTCCACTGTCCTCGGATTCTCTATTGAGTTTGGCGCACTTTACTTCACTTC TGCTTCTTCTTTACGACTAGGCGTTTGGTCTATTCAAGTCAGTCCTTCATCGGTGCGTCGTTTATGAAGAGGATTCAGTG ACGACCCTTTGCTCTTCCTCTGCTTTGCTCAGAATTTTTTTTAACATGGTTCGAACCAAATAAGGAGCAATTGTGGTGTG ACATCTTGTTTGCAAAGTATGGTCACGATGAGTCTTCAAAGGCCTCTATTTGGTGGAAGGATTTAATGGATTCTTGTGTT GGAGAGGATGCAGAACAATGGTTTGAGAGAGGAATATGTAGGGGGTGGGGGAGGGGATTGATATCCGATTTGGACGGAGG ATTGGCATGGTGAGGGTCGTTTTCAAGACTATTTTGCTGAATTATTTGGTGTTTCTGAACAACAACATAAACAAGTGATT GAGATGGGGTTGTGGGTACATAACAATTGGGTATGGATCTGAGATGGGAGGGGGAAGTTGTGGGAAATCTTGTCACTCAG AGGAATGATTTGATGAGAATTATTTTAGCCATTTCATTGATTCTGGGGTATAAGGATTCTTGGTGTTGGACGCGGGAAGG TAGCGGGGTGTACACAATTAAATCTGCTTATGAGGTGCTCATGGACTTGGACAATTTAGAGGTTGATTGGATATTCAGAG GTATGTGGTCTGCTTTGGCTCCTTCAAATGCACTGTGTTTTGGTTGGAAGGTGTTGCTTGACCGTGTTCAGTTGAAGGTC AATTTGATGAAGAGAAATGTTTTTCTCCCCAACACAGCCTGCCTCTTCTGTTCGGTGTCCTTGGAATTCACATATCACCT ATTCTTTTCATGTTTTTACGTGTGGCAAGTCTGGGAAAGGATTGCGAGTTGGTTGGGGTGGTATCGAGTTTTCCCATAAG CAGCGGAAGATCATCTAAGGCAATTTGTTGGGGACAGGGTTGGTCACGAAAAGAAGGGACTATTCGCCATTTCGGTAGTT GTAATTTGGCAGCTTTGGATTGTAAGGAATGGTAAGGTTGGAGGAGGAGCCGGATCCAGGGGTGGTTTTTGAACAAGTTT GCTTAAAGGTTTGGACATGACCGAAGGCAAAGAATAAGAATTTTTCTCATGCAATCTTTGAGTGGTATAGTGAACCACCT TTGTGTTTTAATGTCTAGTAATTCATGAATTTTTTACAGGCTCTAGAAACTTACTCTCTCAATTTCCTTACTTGTGAGGC TTGTGTATAATGGTTTGAGGTACCCCTTGTATCTCTTTAAAAAATATTTTGCCTATAAGAAAACTATTGCTCACTTCTAG TGGACTTAAATTCCTATCATTC
CDS sequence (LotjaGi3g1v0201100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTGAGATGGGAGGGGGAAGTTGTGGGAAATCTTGTCACTCAGAGGAATGATTTGATGAGAATTATTTTAGCCAT TTCATTGATTCTGGGGTATAAGGATTCTTGGTGTTGGACGCGGGAAGGTAGCGGGGTGTACACAATTAAATCTGCTTATG AGGTGCTCATGGACTTGGACAATTTAGAGGTTGATTGGATATTCAGAGGTATGTGGTCTGCTTTGGCTCCTTCAAATGCA CTGTGTTTTGGTTGGAAGGTGTTGCTTGACCGTGTTCAGTTGAAGGTCAATTTGATGAAGAGAAATGTTTTTCTCCCCAA CACAGCCTGCCTCTTCTGTTCGGTGTCCTTGGAATTCACATATCACCTATTCTTTTCATGTTTTTACGTGTGGCAAGTCT GGGAAAGGATTGCGAGTTGGTTGGGGTGGTATCGAGTTTTCCCATAA
Protein sequence (LotjaGi3g1v0201100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLRWEGEVVGNLVTQRNDLMRIILAISLILGYKDSWCWTREGSGVYTIKSAYEVLMDLDNLEVDWIFRGMWSALAPSNA LCFGWKVLLDRVQLKVNLMKRNVFLPNTACLFCSVSLEFTYHLFFSCFYVWQVWERIASWLGWYRVFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 65 | 65 | - | – | |
| PANTHER | 35 | 142 | 108 | 1.3E-19 | – | |
| PANTHER | 35 | 142 | 108 | 1.3E-19 | – | |
| Pfam | 47 | 134 | 88 | 1.4E-14 | ||
| Phobius | 66 | 88 | 23 | - | – | |
| Phobius | 89 | 108 | 20 | - | – | |
| TMHMM | 103 | 125 | 23 | - | – | |
| Phobius | 109 | 131 | 23 | - | – | |
| Phobius | 132 | 148 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0201100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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