Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0201700 |
| Transcript ID | LotjaGi3g1v0201700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT2G38480.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q8LE26|CSPLA_ARATH CASP-like protein 4B1; TrEMBL-Plants: tr|I3S7L6|I3S7L6_LOTJA CASP-like protein; Found in the gene: LotjaGi3g1v0201700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29411825..29414192) extracted from Lotus japonicus Gifu genome v1.2.
ACCGGAAAAAAAAGAAAAATAAGTGTGAATGAATAAAAATCCGCCAAACCATGCACATTACGTTATGGAAGCTTTTGTGT GGCTCATGCGCCCCTTAATGGCTCATGAATCTTCGAAATAACCTCCATAACGATTCGACCGCACAAACAACCATAAAACC GGTCTCAAAATATGAACCAACAGCACAACACAAGCTACCCTCTTACCTATGTGACTATGTCTCTGTCTTGAAAACCTTCA CTATATATTAGTTTTCAATTTTCATTCATCTTTCAATCCATAGGAAGAAAAAGCAGATAGAGATGTTGGATTCTTCTAAC AACTCAGCGGTGAAGATAGAAGTGCAGCCAGAGCCGGCAGAGCCGGTAACTGGTGGCGGCGGCGGCGGAGGCGGGATTCT ACAGCAATGGAGTAGGGAGGACTTGATCAAGAGAGGGTCGTTGGGATTGAGAGGACTTGCTCTGTTTTTCTCTTTGATTT CCCTCATCCTTGTAGCCAGTAACAAGCATGGTGGTTGGGCAGATTTCGACAAGTATCCACAATACAGGTACCCAGATTCT CCTTTGTCGATTTGGTCGTAAATGTGATGTGGGTTTTTGTCAAAATTTGATTTTGTTCACTGGGGTGTTGGGTTTGAAAT GTGAGTTTTTGGATCATAGGTATTTGTTGGCCATAGCTATTCTGTCTTGTTTTTACACTGGAGGCCAAGTGCATCTTGGA GTTCATGAACTTTCCACTGGGAGGAAAATGCTTCAGCCAAGAATTGCAGTGCTGTTTGATTTTATTGGAGATCAGGTTTG GCTTTTTTCCTTCTTCTTTAATCACATTGATTTCTATGGTGCTCTGTTTCTCTGGATAGTGAGAGATTCAGGATTCAAAT TCAATTCTGTTATGTAATTAAACTGAATTTCAATTTTTAACAAGACTTGCTTGAAAAAAAATGGCCCTTTAATTTTACTT ATTTCTTGATAAGCTGTGTTGTAATATTGTATTAATTATTGTCTCCCTCTAGTAGCCGTGGAAGACTCAAGTTTTTTCCT TATGCAGTTGAGTTAAATTAAACTTGCAAGTAATGTGTAAAAAGCTAGTTTGAAAAGTTCAAACTTCTCTTTGATGTTAA CCCTTTAGCAAGGAATCAAAATGTAAACTTATTTCCTCAAGTAATGAATGGTAAGTAAAGTATTATTCTAAAATTTGTTT ATAGAAGTAAGACTTTATAGTTTCTACATGCTTTATAACATATATGATCATGTAGGTAAAAAGTTGTTTATTATAAAAGC TAGAATAATTTAGTCTAAAATTAGCTAATGGGTCCTACAAATCAAATGTTTTGTTACTCTACCCAGATAGATTGAGGTGT ACGTCCAAGCATTCAGTGTGCTGTTAAAGATTCTCTACGATTAAGATTCAATGGGTCATATACACTTAAAGTGATTTCAT TAAATCAAAACGTATGATTTTGATCGAAGAGCTATAAACTATGACTTCACTTAAATACTGGTGAGCCAAAATCATGGTAT ACAGTAACAACTTTTTTTAACTTTTGTGGTTGTTTAATCATTAATGTGATTTAGACTTCACCGTGATTTTTCAGCGTATA TCCATACATGCGGTTAGTGTCCAATAATTGGCTTCTACTTGCCTTTTGTTAGATTATGAAATGTACTAAATTGAGCTCAG CTCAATTGATGAAGTTTTTTTTTGGTTTCAGATTATGGCATATCTCTTGATATCATCAGCGTCTTCAGCGATTCCAATAA CAGATACCATAAGAGAAGGAGGAGACAATATATTTACAGACTCATCATCTTCAGCCATTAGCATGTCCTTTCTAGCCTTT ATATGTCTCGCACTATCAGCCATTATATCAGGACACAAACTATCAGCTCAAACTTGTATCTGAAATTTCATAAAATTTTC TCTTATCATCTTTCGTATTTCCATTATTTATCAATAATACATGTGTATGTAAATTTGTGCAAGGAAGTGAGTATAAGAAT CCTCCACCCCTTTTAAGTCTGAGCTGCTGTGTATATGTTACAATGTGATGTGAAACAGTACTTGTTTTTACTTTTTATAC AAGGAATACAAGTTTTTTCCGTCTAAACTATGTTGATGATACAAAGAATACAAGTTTTTTACGATTAATTGAAAAGCAAA ATGTAATTTATTTCTGAGCAAAAGCTTTTTAAGTAGTTTAAGAATGTCATAATTGATTTTGAAAAAAAAAAAAGCTGGCT AAACATGCTATTCGGAAGAAATAGTTGTGGTGGATGCATAATTCTAGAGTGCTTGAAAGAAGCAAAGTTAGAACCAGATT CTTTTATTTTTATAATAACATAATTTTAATACTTGTTTACACTGATTT
CDS sequence (LotjaGi3g1v0201700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGATTCTTCTAACAACTCAGCGGTGAAGATAGAAGTGCAGCCAGAGCCGGCAGAGCCGGTAACTGGTGGCGGCGG CGGCGGAGGCGGGATTCTACAGCAATGGAGTAGGGAGGACTTGATCAAGAGAGGGTCGTTGGGATTGAGAGGACTTGCTC TGTTTTTCTCTTTGATTTCCCTCATCCTTGTAGCCAGTAACAAGCATGGTGGTTGGGCAGATTTCGACAAGTATCCACAA TACAGGTATTTGTTGGCCATAGCTATTCTGTCTTGTTTTTACACTGGAGGCCAAGTGCATCTTGGAGTTCATGAACTTTC CACTGGGAGGAAAATGCTTCAGCCAAGAATTGCAGTGCTGTTTGATTTTATTGGAGATCAGATTATGGCATATCTCTTGA TATCATCAGCGTCTTCAGCGATTCCAATAACAGATACCATAAGAGAAGGAGGAGACAATATATTTACAGACTCATCATCT TCAGCCATTAGCATGTCCTTTCTAGCCTTTATATGTCTCGCACTATCAGCCATTATATCAGGACACAAACTATCAGCTCA AACTTGTATCTGA
Protein sequence (LotjaGi3g1v0201700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLDSSNNSAVKIEVQPEPAEPVTGGGGGGGGILQQWSREDLIKRGSLGLRGLALFFSLISLILVASNKHGGWADFDKYPQ YRYLLAIAILSCFYTGGQVHLGVHELSTGRKMLQPRIAVLFDFIGDQIMAYLLISSASSAIPITDTIREGGDNIFTDSSS SAISMSFLAFICLALSAIISGHKLSAQTCI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 46 | 46 | - | – | |
| PANTHER | 12 | 189 | 178 | 3.9E-77 | – | |
| PANTHER | 12 | 189 | 178 | 3.9E-77 | – | |
| Pfam | 42 | 172 | 131 | 5.7E-30 | ||
| Phobius | 47 | 66 | 20 | - | – | |
| TMHMM | 47 | 66 | 20 | - | – | |
| Phobius | 67 | 77 | 11 | - | – | |
| Phobius | 78 | 96 | 19 | - | – | |
| TMHMM | 81 | 103 | 23 | - | – | |
| Phobius | 97 | 116 | 20 | - | – | |
| TMHMM | 116 | 138 | 23 | - | – | |
| Phobius | 117 | 141 | 25 | - | – | |
| Phobius | 142 | 160 | 19 | - | – | |
| TMHMM | 158 | 180 | 23 | - | – | |
| Phobius | 161 | 179 | 19 | - | – | |
| Phobius | 180 | 190 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0201700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…