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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0201900 |
| Transcript ID | LotjaGi3g1v0201900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR-repeat protein; TAIR: AT5G01720.1 RNI-like superfamily protein; Swiss-Prot: sp|Q8RWU5|FBL3_ARATH F-box/LRR-repeat protein 3; TrEMBL-Plants: tr|I1JL30|I1JL30_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0201900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29440279..29442082) extracted from Lotus japonicus Gifu genome v1.2.
TTGATGAGTCTAACTAATGGTTTGCATTTGATTTTCCAGGTGACTCTTGCTCTTGCTAATGGTTTGAGTAAACTTTCCAT GTTGCAATCAATAATATTAGATGGCTGCCTTGTTACTTCTGATGGATTAAGGGCCATTGGAAATTTGCGCATTTCTCTCT GGGAGTTGAGTCTAAGCAAATGTTCAGGAGTGACAGATGAAGCCCTCTCATTCATTGTGTCTAAACACACAGATCTAAGG AAACTTGACATCACGTGTTGCCGTATGATAACAGATGTTTCCATCGCCAGCATTGCAAATTCATGCACAAGCCTCACTTC TCTCAAAATGGAGTCATGTACTCTAGTTCCACAGGAAGCATTTGTCCTGATTGGACAGAAATGCCATTATCTTGAGGAGC TTGACATAACAGATAATGAAGTTGATGATGAAGGTTTGCCTATTTCCCTCCTCCTATGGAATTCTTAACTTTCACATCAG CTGCTATACTTACCTAGTAGCCTCCCCTCTCTGCAGGTCTTAAGTCTATATCTAATTGTTCCAGGCTCTCCAGCCTGAAA GTAGGAATCTGCCTTAACATAACTGACAGAGGAGTGGCCTATATTGGCATGTGTTGCTCAAAGTTAAAGGAACTGGATCT ATACAGGTTTGTGAATCAAATATATGAACCTTTACTTTACTTCTAATTAGATGAATATTCTTTGCATTTTCTCTTAATTT GCTTTTCACCATAAACTATTATTGAGCTAGGTTGAGTTTTTAAATTTAAACATTTGAAAACATAGTTTAGCAAACTGGCT TTGATACAATTTGGATGTATCTTTTTTATTAAATGAATTAAAAACCAGTATCAGACCTAGTTCGTCTAAAGCACCTTTCT TTTTTCCACATCCTTGATATCAAATGCAAATACAGCATAAAGATTCTAAGATTTATGCTGTTTGCACAAAGATCATTGTT TGTTCTCACCGGAGATTATTTTAAATTTCCAGGTCTACAGGAATTACAGATTTAGGCATTTCAGCAATTGCTTGTGGTTG CCCGGGCCTTGAAATAATTAATACATCTTATTGTACTAACATCACGGATGGGTCATTAATCTCCTTGTCAAAATGTCGAA ATCTGAAGACACTCGAAATACGTGGATGTCTTCTCGTTACGTCTATAGGTCTGGCATCTATCGCGATGAATTGTAAACAA CTAATCTGCGTAGACATAAAGAAGTGTTACAACATTGATGATAGTGGGATGATTCCCCTAGCATATTTCTCCAAAAGTCT AAGACAGGTATTTTGTCTTTTCTCACTTTTCTAGGAAACATCAGAGATGCAGGAAAGCTTTGCTAAGGTTTTAATGTTTA TTATGTCCTTTTCCTGATTTGCAGATAAATTTGTCATATAGCTCAGTTACGGATGTGGGGCTTCTGTCACTTGCTAGTAT CAGTTGCCTTCAAAGCTTTACCATCCTTCACCTTCAAGGCTTGGCTCCAGGAGGACTCGCTGCTGCCTTATTGGCATGTA GAGGGCTAACAAAAGTGAAGCTTCACCTTTCACTAAGATCTCTGTTACCTGAGCTGCTTATCAGACATGTAGAAGCACGC GGCTGTGTGTTTGAATGGAGAGATAAAGTGTTTCAGGTATATTCATGATTCTTATCTTTGGATTTAGCAAAGCAAAATAC TAACTAATTTTATATTGGTGTTAGTCTCATATATTTTATGTTACAATTGAAGAATTGGGGGAAGTCTGAGAATTTTGGAA CCAACATGTTTTTTTAATATTTTCCCGTCCCCAACCAACACTAG
CDS sequence (LotjaGi3g1v0201900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCTAACTAATGGTTTGCATTTGATTTTCCAGGTGACTCTTGCTCTTGCTAATGGTTTGAGTAAACTTTCCATGTT GCAATCAATAATATTAGATGGCTGCCTTGTTACTTCTGATGGATTAAGGGCCATTGGAAATTTGCGCATTTCTCTCTGGG AGTTGAGTCTAAGCAAATGTTCAGGAGTGACAGATGAAGCCCTCTCATTCATTGTGTCTAAACACACAGATCTAAGGAAA CTTGACATCACGTGTTGCCGTATGATAACAGATGTTTCCATCGCCAGCATTGCAAATTCATGCACAAGCCTCACTTCTCT CAAAATGGAGTCATGTACTCTAGTTCCACAGGAAGCATTTGTCCTGATTGGACAGAAATGCCATTATCTTGAGGAGCTTG ACATAACAGATAATGAAGTTGATGATGAAGGTCTTAAGTCTATATCTAATTGTTCCAGGCTCTCCAGCCTGAAAGTAGGA ATCTGCCTTAACATAACTGACAGAGGAGTGGCCTATATTGGCATGTGTTGCTCAAAGTTAAAGGAACTGGATCTATACAG GTCTACAGGAATTACAGATTTAGGCATTTCAGCAATTGCTTGTGGTTGCCCGGGCCTTGAAATAATTAATACATCTTATT GTACTAACATCACGGATGGGTCATTAATCTCCTTGTCAAAATGTCGAAATCTGAAGACACTCGAAATACGTGGATGTCTT CTCGTTACGTCTATAGGTCTGGCATCTATCGCGATGAATTGTAAACAACTAATCTGCGTAGACATAAAGAAGTGTTACAA CATTGATGATAGTGGGATGATTCCCCTAGCATATTTCTCCAAAAGTCTAAGACAGATAAATTTGTCATATAGCTCAGTTA CGGATGTGGGGCTTCTGTCACTTGCTAGTATCAGTTGCCTTCAAAGCTTTACCATCCTTCACCTTCAAGGCTTGGCTCCA GGAGGACTCGCTGCTGCCTTATTGGCATGTAGAGGGCTAACAAAAGTGAAGCTTCACCTTTCACTAAGATCTCTGTTACC TGAGCTGCTTATCAGACATGTAGAAGCACGCGGCTGTGTGTTTGAATGGAGAGATAAAGTGTTTCAGAATTGGGGGAAGT CTGAGAATTTTGGAACCAACATGTTTTTTTAA
Protein sequence (LotjaGi3g1v0201900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLTNGLHLIFQVTLALANGLSKLSMLQSIILDGCLVTSDGLRAIGNLRISLWELSLSKCSGVTDEALSFIVSKHTDLRK LDITCCRMITDVSIASIANSCTSLTSLKMESCTLVPQEAFVLIGQKCHYLEELDITDNEVDDEGLKSISNCSRLSSLKVG ICLNITDRGVAYIGMCCSKLKELDLYRSTGITDLGISAIACGCPGLEIINTSYCTNITDGSLISLSKCRNLKTLEIRGCL LVTSIGLASIAMNCKQLICVDIKKCYNIDDSGMIPLAYFSKSLRQINLSYSSVTDVGLLSLASISCLQSFTILHLQGLAP GGLAAALLACRGLTKVKLHLSLRSLLPELLIRHVEARGCVFEWRDKVFQNWGKSENFGTNMFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| Gene3D | 2 | 117 | 116 | 2.1E-18 | ||
| Phobius | 6 | 17 | 12 | - | – | |
| SUPERFAMILY | 16 | 219 | 204 | 3.77E-37 | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| PANTHER | 20 | 333 | 314 | 1.2E-100 | – | |
| PANTHER | 20 | 333 | 314 | 1.2E-100 | – | |
| Phobius | 23 | 383 | 361 | - | – | |
| SMART | 24 | 48 | 25 | 330.0 | ||
| SMART | 49 | 74 | 26 | 15.0 | ||
| SMART | 75 | 100 | 26 | 0.0031 | ||
| Pfam | 75 | 98 | 24 | 0.17 | ||
| SMART | 101 | 126 | 26 | 12.0 | ||
| Gene3D | 118 | 369 | 252 | 4.4E-42 | ||
| Pfam | 126 | 149 | 24 | 2.8E-5 | ||
| SMART | 127 | 150 | 24 | 170.0 | ||
| SMART | 151 | 176 | 26 | 3.7 | ||
| Pfam | 177 | 200 | 24 | 0.76 | ||
| SUPERFAMILY | 177 | 337 | 161 | 1.26E-22 | – | |
| SMART | 177 | 202 | 26 | 0.0063 | ||
| SMART | 203 | 228 | 26 | 0.047 | ||
| Pfam | 227 | 251 | 25 | 1.6 | ||
| SMART | 229 | 253 | 25 | 33.0 | ||
| SMART | 254 | 279 | 26 | 5.7 | ||
| SMART | 280 | 304 | 25 | 12.0 | ||
| Pfam | 281 | 302 | 22 | 0.84 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0201900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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