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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0202000 |
| Transcript ID | LotjaGi3g1v0202000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Solute carrier family 40 member 1; TAIR: AT2G38460.1 iron regulated 1; Swiss-Prot: sp|O80905|S40A1_ARATH Solute carrier family 40 member 1; TrEMBL-Plants: tr|I1JL28|I1JL28_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0202000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29468800..29473787) extracted from Lotus japonicus Gifu genome v1.2.
CACCATTGATTCATTATGGACACATTAATGTGAGAAATTGCATTGTATGTTCAACCTACCATTGTGAATTGTGATCTTCA GTCAAAAGGAGTTAGGGGAATTAGAGTCATGGAAGAAAGTCTCATATTGAGGGATCCTCTACTACCCCAACAACAAGAAA CAGCAACACCATCTTCTCTAATCACTTATCTATATATTGGCCACTTTTTAGCTAGATGGGGTGCCAGGTTCTTCTTTCAT TTCTTACCATTGCTTTAAAATCATAATACAAAGTGTTGATGTATTTTTTTTCCTTTCAGTTTAATTTCGTCACAAAAAGG GATGAATTGAAATGTTTGTTTGTTCTATGAAATCAGAAATTTGTTATGATTGGGATATAAAATATCCCATTAGGTGTTTG TTATTATGTCCCACCCTAATATATTAATTTAACATATCTACTACCAAGTTAAGATATAGACAACAGTAGACATGAAAGAA GTTAAGTCGGTTAGGATCAGTGTGTTGTTGTTGGCTTGAGATTTTCAAAATCATTGTTGAATCAGTGAAGGGTGACTCTA TTTTAATGCTTTAGTTTGTTCTTTTCTAGTTAAATTAAGTGAGGATCTCTGTTTGCAGAATGTGGGAATTCTCTGTTGGT TTATATATGATCAATATCTGGCCAGATTCATTGCTCTATGCAGCCATATATGGTGCTGTTGAATCTGCTTCCACTGCAGT GTTTGGTCCCTTAATTGGAACATGGATTGATAAGTTCACTTATGTGAAGGTAACTTTTGTTACTAGCATTTCAATTATAT CAAGGTTCCTTCATATAATTATTTGATTATCAAGGTTCCTATAATGGAGTAATTCAGTCTTCATGTTTCATTTGCAGGTT TTGCGATTGTGGTTGGTGACACAGAATCTATCTTTCGTTATTGCCGGGGTCACTGTTGTTAACTTACTTATCTACTCATC TTTGAAGTTCACTAATTTCTCAGCTTTCATATTGCTGGTGATGGTAACCAATATCTGCGGCGGCATTGGAGTACTTTCAA CTCTTGCTGGCACCATCTTGATTGAAAGAGAATGGTAATGTTCTTGAGGATTTGGTGGGAAATCATTTATATTTAATTAA GCAAGTACAATGAACAATCTATTGCTTGAATCAAATATTGATGCTAAAGATTTAGTTTCCACTTTTCACCATCATGGGGA AATGAAGGGGAAAAAGGAATTTCAGTAAAGCTTAATGCTTGTATTTTTCTCTCTTTGTTAGAAATCAGACTAAACTCTGT CCTAAAAGCTAGCTTAGGGATTGTGCTACCCTTTATTAGGACTTATTTAGTTATATGTGTAGTCAACGCGGGACCTTAAC ACTTTTCATAATGTAATGACTCTGCTGATTTTTATAGTATCACTTGTTAAAGGGAACTGGATTTTGTGAAATGTCAAGTT AAATTATAGGAGAAACATAGCATGTAAAAATGTTTTTATGTTGTTTACATTGTTCAGGTTGTTAGTTATATCCGAAGGTC AACCCCCGGAATTGCTGACAAAGATGAACTCGGTTACCAGACGCATTGATCTATGCTGCAAGCTTCTTGCTCCTGTTATA ACTGGCTTCATAATAAGCTTTGTATCCCTTAAAGCATCTGCTATAACTTTAGCACTCTGGAATACAGTTTCTGTTTGGGT AGAGTATTGGCTTTTTACTTCTGTGTATAATGGGATTCTAGCTTTGGGCCAAAGTAGCCAGAGGAGGATGACAAGGCTTA CACAAAGTGATCAAGAAAGGAACAATTCAACTTCAGAAGGGGACAGCTTGGTTTCTGGTACTGGTGGTAACTCAGAATTG ACAGAAAGAGAAACAAGGAAAACAAAATTTGAGTGGATTTTAGAGAACCCTTATGTTGATGCATGGAAAGTTTATTTACA GCAACAAGTTGTTCTACCTGGACTAGCTCTGGCTTTGCTATTTTTCACTGTACTCAGGTGAAATTAAGTTTACAAACATT CACAGCATGTAAATCATGGTATTTAGAAGGCCACACATAACATATTTTTAAAGGGGTTTCCTTGATATTATTATTCTTAC ATCTTTAGAATTCAGTGGTATACTATGTGATATGTCATGGAGAAATCTACTAGTTACACAAGCACACACAGATTTGGGTT CCCTACAGTCAGGGATACCCTACATTCATGCAGTCATGCAATCTGAGTCGTCTGAACCTGATCGAGGTTCATATATTTTT ATCAAGATATGATGGTAGATATAAATTTAAAACTTGAGCCGACCAATCTTAATCGAACAACTCAGATTGTGTGACTGTGA ATGGAGGGATTCCCTGACTGCAGTGAATCCATTTCCGGCACACTAGGACCAGTAGATCCTTTTCTTAAAATATAAATACG AAAAGGAAAAAACAAAGAAAAAGAAATAATTTTCAGCAACCTTGACATTTGTTGCATTTGTGCATCCAAATTATGTGAAG TCAAGGCTTTATGTATTAACAAATAAAAATTGTCCAAGTTAGCAGTATCTGTCAATTATGTTGTAATCCTTGGATTGTTC CAAACACACCTTCAGAAACATGTATTTGTTTACTGTTAGTTTGGCATTAAGTCTTACTGATGAAATTCCAATTAATTGGT TCAGCTTTGGAACTTTGATGACAGCAACCTTAGAATGGGAAGGCATACCTGCATATGTTATTGGTATAGCGCGAGGAATA AGCGCTGTGATTGGAATAGCTGCAACAGTTGTATATCCTGTGCTGCAATCTCACATATCAACTATTAGAACTGGACTTTG GTCTATATGGTCTCAGGTATAAACCAACAAATGGCCTTAATGTTCTGTACAAATGGAATGTTATGAGTGAAAACCAAATT TTAATCTCTTTTCTTTGTGTACAAGCATCGAAAATACATGTTACTGGTCATACTTTAGCATGTAGCTTGTTCTTCCTTAC CAATGAATTTTTGTTGTCATGGGTTTTTTCTACACTTTGCAGTTGATTTGCCTCCTCCCTTGTGTAGCTGTAATCTGGAT AAAAAGTGGCTTTCTATCATCTTATATTTTGATGGGAAGTGTTGCCATATCTCGGCTTGGACTGTGGATGTTTGATTTGT CTGTACTTCAACAAATGCAGGCAAGAAATAGCCCTTAGTGTCTGATATCAATTCAGTTGTTTCCTACGGGTTTTCTTATC TAATGTGAAATCTAGCTTTTAATGTCTATGGTGAATCACCTTGGCCTGATTTGTTTTATCCTTTTTCAACTTTTTTTTTA AACAGAACCTTGTTCCAGAATCTGATCGTTTGATTGTTGGAGGTGTTCAGAATTCTCTGCAGTCCTTGATGGATTTATTG GCCTATGCTATGGGAATCATAATATCTGATCCAAGGGTGAGTTTTAAAACTATAACTATCCATGTCCAACCCAAAGATGT ATTTTCTGTTTTCTTAAATGGGGACGAGAGCAAGGCATTCTATATTTCTGTCTCTAGTTGATCATGGAATGAGTTAGAGA ATTGGGGGTAAGAGTGAATTGTGAGAGTAAGACATTTTTTCCAGCTATGAGACATAGTGGAAGGCTTTGATACCAACTGA TAGGGAACTCTGGGAAAATCATAGCACAAAAGCGAGCGGTTGTAGTTGGTTCTATCCTAACACTTAGTGAACCCTTTAAA AGGTTCTACCCTTTATTGCTTAATCACTGAAAGTGTTCAATATATAAATGTGCAAAAAGTTATAATTCTCAACACTACTG TGACATAAAATTTATTTCTTTATAGCACCTTTACAATTATATACTGACTTACTAATAAAAAGTTTCTCATCTGCTGACTG CTGTAAAAACCTGGCTATTGCTTTGTACCTGGTTCTTAAGAAAAGCTCAATACAATTGTGCTGATCCTGTTTCCTTGTTA TCTATGTCTGTTCAGGACTTTTGGAAGTTGATTTTGCTATCATTTCTGGCAGTTACATTAGCTGCATTCCTCTACTGCAT CCATGTATACCGCGTACGGAAGCACATCTTTCACTTTGACAAACTATTGAGGTTCAATTGTTTTGCAAGTGCATCATAAG ATGTGAAGGCCAATTTTTGCATTAACTTTTGATACCATTTGGAGAAACATCTACATAGTGAAGATCTATGGAGTTATAGT TTTAGGTGTGCTGGCTAAAATTGTCTATAGAGCATCCTTCTTTTCTTTTCTGCATAAGAATAGCCCTCTCAGTAAATAAT AACCCGGATTCATCACATTAAGTTTTGAAATATAAAGAGCAGACTTCTTTGGGGTAAGTCATAAAATGGAAATGTCATAT TTGCGGGTGTGTTTGAATAAACAACTTAATTAAACGCTTAACAATAAGGCTTATTGTTTAAACACTTATTCATCAGCTAA TTTGTAAAACTTATAAGTTGAAAATAGATTGTAAGTCATAAACTCTTATTCATAAGCTAAAATGAGCAGTTTATGAAAAT AAACTCAAAATAGCTTATAGATACATAAGTCATAAGTTATTTACATAAATTATCACAGACAACATCATCAAAGTATAAGA TGTACGGGTGAGTGGGGTTGCTGTCGTTTATAATTCCACCTATAATGTATAACTAGTGAAACAATATCTAGATATGCTGT CTATGATGTATGGTAGTTCAATTGAATTGATTCTGTTTTTTCAATTGATGCATTGCTATCAGCATGATTATGATTTTTAT TTAGAACAACATAGCTGGATAACATTGGATGGGTTTATCATAGTCCTAAATATCCACCAAAATGAGAATTGATTTTGAAG ACAAGTCGCATGTGGGTGGGTCCATTTGTACCTAATTTGTAATTTGTCCGCAAGTCACTCCTCCCTCGTTGAGGTGAGTG GTCCAGCCAAACACATGCATTGTGTCCCTACAATATGTGCCCTAAATTTCTTTTTGTCAAAAGCTAGCATTCACAGATGT GTGTGTAATTGTATGGACAGCAACAAAT
CDS sequence (LotjaGi3g1v0202000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAAGTCTCATATTGAGGGATCCTCTACTACCCCAACAACAAGAAACAGCAACACCATCTTCTCTAATCACTTA TCTATATATTGGCCACTTTTTAGCTAGATGGGGTGCCAGAATGTGGGAATTCTCTGTTGGTTTATATATGATCAATATCT GGCCAGATTCATTGCTCTATGCAGCCATATATGGTGCTGTTGAATCTGCTTCCACTGCAGTGTTTGGTCCCTTAATTGGA ACATGGATTGATAAGTTCACTTATGTGAAGGTTTTGCGATTGTGGTTGGTGACACAGAATCTATCTTTCGTTATTGCCGG GGTCACTGTTGTTAACTTACTTATCTACTCATCTTTGAAGTTCACTAATTTCTCAGCTTTCATATTGCTGGTGATGGTAA CCAATATCTGCGGCGGCATTGGAGTACTTTCAACTCTTGCTGGCACCATCTTGATTGAAAGAGAATGGTTGTTAGTTATA TCCGAAGGTCAACCCCCGGAATTGCTGACAAAGATGAACTCGGTTACCAGACGCATTGATCTATGCTGCAAGCTTCTTGC TCCTGTTATAACTGGCTTCATAATAAGCTTTGTATCCCTTAAAGCATCTGCTATAACTTTAGCACTCTGGAATACAGTTT CTGTTTGGGTAGAGTATTGGCTTTTTACTTCTGTGTATAATGGGATTCTAGCTTTGGGCCAAAGTAGCCAGAGGAGGATG ACAAGGCTTACACAAAGTGATCAAGAAAGGAACAATTCAACTTCAGAAGGGGACAGCTTGGTTTCTGGTACTGGTGGTAA CTCAGAATTGACAGAAAGAGAAACAAGGAAAACAAAATTTGAGTGGATTTTAGAGAACCCTTATGTTGATGCATGGAAAG TTTATTTACAGCAACAAGTTGTTCTACCTGGACTAGCTCTGGCTTTGCTATTTTTCACTGTACTCAGCTTTGGAACTTTG ATGACAGCAACCTTAGAATGGGAAGGCATACCTGCATATGTTATTGGTATAGCGCGAGGAATAAGCGCTGTGATTGGAAT AGCTGCAACAGTTGTATATCCTGTGCTGCAATCTCACATATCAACTATTAGAACTGGACTTTGGTCTATATGGTCTCAGT TGATTTGCCTCCTCCCTTGTGTAGCTGTAATCTGGATAAAAAGTGGCTTTCTATCATCTTATATTTTGATGGGAAGTGTT GCCATATCTCGGCTTGGACTGTGGATGTTTGATTTGTCTGTACTTCAACAAATGCAGAACCTTGTTCCAGAATCTGATCG TTTGATTGTTGGAGGTGTTCAGAATTCTCTGCAGTCCTTGATGGATTTATTGGCCTATGCTATGGGAATCATAATATCTG ATCCAAGGGACTTTTGGAAGTTGATTTTGCTATCATTTCTGGCAGTTACATTAGCTGCATTCCTCTACTGCATCCATGTA TACCGCGTACGGAAGCACATCTTTCACTTTGACAAACTATTGAGGTTCAATTGTTTTGCAAGTGCATCATAA
Protein sequence (LotjaGi3g1v0202000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEESLILRDPLLPQQQETATPSSLITYLYIGHFLARWGARMWEFSVGLYMINIWPDSLLYAAIYGAVESASTAVFGPLIG TWIDKFTYVKVLRLWLVTQNLSFVIAGVTVVNLLIYSSLKFTNFSAFILLVMVTNICGGIGVLSTLAGTILIEREWLLVI SEGQPPELLTKMNSVTRRIDLCCKLLAPVITGFIISFVSLKASAITLALWNTVSVWVEYWLFTSVYNGILALGQSSQRRM TRLTQSDQERNNSTSEGDSLVSGTGGNSELTERETRKTKFEWILENPYVDAWKVYLQQQVVLPGLALALLFFTVLSFGTL MTATLEWEGIPAYVIGIARGISAVIGIAATVVYPVLQSHISTIRTGLWSIWSQLICLLPCVAVIWIKSGFLSSYILMGSV AISRLGLWMFDLSVLQQMQNLVPESDRLIVGGVQNSLQSLMDLLAYAMGIIISDPRDFWKLILLSFLAVTLAAFLYCIHV YRVRKHIFHFDKLLRFNCFASAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 15 | 497 | 483 | 6.0E-201 | ||
| PANTHER | 15 | 497 | 483 | 6.0E-201 | – | |
| Phobius | 21 | 39 | 19 | - | – | |
| Pfam | 24 | 469 | 446 | 1.1E-156 | ||
| SUPERFAMILY | 25 | 486 | 462 | 2.35E-19 | ||
| CDD | 27 | 479 | 453 | 2.95491E-134 | – | |
| Phobius | 40 | 58 | 19 | - | – | |
| Phobius | 59 | 82 | 24 | - | – | |
| TMHMM | 60 | 82 | 23 | - | – | |
| Phobius | 83 | 93 | 11 | - | – | |
| TMHMM | 94 | 116 | 23 | - | – | |
| Phobius | 94 | 115 | 22 | - | – | |
| Phobius | 116 | 126 | 11 | - | – | |
| TMHMM | 126 | 148 | 23 | - | – | |
| Phobius | 127 | 152 | 26 | - | – | |
| Phobius | 153 | 184 | 32 | - | – | |
| TMHMM | 181 | 200 | 20 | - | – | |
| Phobius | 185 | 210 | 26 | - | – | |
| Phobius | 211 | 215 | 5 | - | – | |
| TMHMM | 215 | 232 | 18 | - | – | |
| Phobius | 216 | 233 | 18 | - | – | |
| Phobius | 234 | 299 | 66 | - | – | |
| MobiDBLite | 241 | 273 | 33 | - | – | |
| MobiDBLite | 241 | 269 | 29 | - | – | |
| Phobius | 300 | 320 | 21 | - | – | |
| TMHMM | 301 | 323 | 23 | - | – | |
| Phobius | 321 | 331 | 11 | - | – | |
| Phobius | 332 | 356 | 25 | - | – | |
| TMHMM | 333 | 355 | 23 | - | – | |
| Phobius | 357 | 367 | 11 | - | – | |
| TMHMM | 367 | 386 | 20 | - | – | |
| Phobius | 368 | 386 | 19 | - | – | |
| Phobius | 387 | 391 | 5 | - | – | |
| TMHMM | 390 | 408 | 19 | - | – | |
| Phobius | 392 | 415 | 24 | - | – | |
| Phobius | 416 | 426 | 11 | - | – | |
| Phobius | 427 | 452 | 26 | - | – | |
| TMHMM | 429 | 451 | 23 | - | – | |
| Phobius | 453 | 457 | 5 | - | – | |
| Phobius | 458 | 478 | 21 | - | – | |
| TMHMM | 461 | 483 | 23 | - | – | |
| Phobius | 479 | 503 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Iron ion transmembrane transporter activity | Enables the transfer of iron (Fe) ions from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Iron ion transmembrane transport | A process in which an iron ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi3g1v0202000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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