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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0204500 |
Transcript ID | LotjaGi3g1v0204500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein transport protein Sec61 subunit beta; TAIR: AT3G60540.1 Preprotein translocase Sec, Sec61-beta subunit protein; Swiss-Prot: sp|P38389|SC61B_ARATH Protein transport protein Sec61 subunit beta; TrEMBL-Plants: tr|I3SVM8|I3SVM8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0204500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29973672..29973920) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTTAGGTGGAGGAAACCCCCAAAGAGGAAGTGCTGCAGCTACTGCAAGCATGAGGAGAAGGAAACCAGCTGGTGG TGCGGCCGCGGGAGGAGCAGCCGGGAACATGCTTCAATTTTACACTGATGATGCCCCTGGACTCAAGATCTCCCCAAATG TGGTTCTTGTAATGAGCATTGGCTTTATAGCATTTGTTGCCATTCTTCATGTGATGGGCAAGCTATATTTTGTGCGTAGG GAGGCATAG
CDS sequence (LotjaGi3g1v0204500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTAGGTGGAGGAAACCCCCAAAGAGGAAGTGCTGCAGCTACTGCAAGCATGAGGAGAAGGAAACCAGCTGGTGG TGCGGCCGCGGGAGGAGCAGCCGGGAACATGCTTCAATTTTACACTGATGATGCCCCTGGACTCAAGATCTCCCCAAATG TGGTTCTTGTAATGAGCATTGGCTTTATAGCATTTGTTGCCATTCTTCATGTGATGGGCAAGCTATATTTTGTGCGTAGG GAGGCATAG
Protein sequence (LotjaGi3g1v0204500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALGGGNPQRGSAAATASMRRRKPAGGAAAGGAAGNMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRR EA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 82 | 82 | 2.1E-45 | ||
Phobius | 1 | 53 | 53 | - | – | |
MobiDBLite | 1 | 32 | 32 | - | – | |
PANTHER | 1 | 82 | 82 | 2.1E-45 | – | |
PIRSF | 2 | 80 | 79 | 3.0E-26 | ||
TMHMM | 24 | 41 | 18 | - | – | |
Pfam | 34 | 73 | 40 | 2.2E-18 | ||
Phobius | 54 | 77 | 24 | - | – | |
TMHMM | 56 | 78 | 23 | - | – | |
Phobius | 78 | 82 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Sec61 translocon complex | A translocon complex that contains a core heterotrimer of conserved alpha, beta and gamma subunits, and may contain additional proteins (translocon-associated proteins or TRAPs); in budding yeast the core proteins are Sec61p, Sbh1p, and Sss1p. The Sec61 translocon complex functions in cotranslational and posttranslational translocation events. | ||
Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi3g1v0204500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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