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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0206600 |
| Transcript ID | LotjaGi3g1v0206600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Scarecrow transcription factor family protein; TAIR: AT4G00150.1 GRAS family transcription factor; Swiss-Prot: sp|O81316|SCL6_ARATH Scarecrow-like protein 6; TrEMBL-Plants: tr|I1JKU2|I1JKU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0206600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:30319740..30322916) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAAAAGTAGAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACTCTACCACTTTTATACGCT GCACGCATCCATCTTGAGAAAACACAACCAAACAAAGAGTGTTCCACACAGAGAAAACACAACCAAACAAACCAACAAGG ATTTATCACATTCATTCATTCATGGCTTTCTCTCTTCACTACCACAACCATTTGGAGCCAAATACAAAAAATCCATAGAG GTGCTCTCTCATGTTTACATTCATTTCTCACACACACTATGACACTCAACAATTTGAATATCCCACCAAAGTTCACCCCT TTATTTTTTCTTAATGGTTCATTTAGCATCTAATTTAGCTTAATTTCTAAGCCTTGTTTGTTTGTTTCTGGGTTTCTAAA AAACCAAGTCCATTAGTCTAAAAAATCATTCTTATCAGTTTGGGTTTGTGTGGGGGGAACAAATCACAAAGGTGCTACTA CCTTTTGAAAAACTAGAGTCTCTCTTTTTTTGTGTGGTTGGATTTGTGGGCACCCCTTATTATTGTTCTTCTTCTCTGTA ACTTTTCTCAGATTAGATGAAGGCCATGCCCTTGTCCCCTTTTGAGGAATTTCAAGGGAAGAAGGGTGTGTTGTTGGATT TCACCTCATCCTCAGATTCATTCTCACTGCTTTTACATCATCATCATCATCAGAATCAGCCACAAAAGTGGACCTGCAGT GACAAAAAGGAGGATTTTTGCTATGTGGGCAGCACTGAGCCCAACTCTGTTCTTGACTCCAGAAGAAGCCCAACCTCTCC TACCTCCTTCTCCACAATGTCCTCCTCTCTTGGCAGCAGCAGCAGCAACAGCTCCGGCAACGGTGGTGGTGGTGGCTCAG CCAACACCACCGCCACAGCAGTGCCAACTGTCTCAGAGAATCTTCCTCATGAAGACTGGGATGGTCAAGATCAATCTCTT CTGAGACTAATCATGGGTGATGTTGAAGACCCATCTGCAGGATTGACCAAGCTCTTGCAAAGCACTGGTTGTGGGTCTCA AAATGTTGATTTCAGTGGAAATTTTGGTGTTGTGGATCAAGGGTTGAACATGGAAAGTGATATCAACTCTTCTATGCCAG AGAGTTACAATTACCCTGGTTTTGGATTCAATTCTGGGAACATGGATGCTCACAATGCTAAGGTTTCAGAATCCATGTTC TCTTCTTCAGGTAATATGAACAATCCTCTTTTGGTGTCATCATCTCCTGGTGGATTCAGTTCTCAGCAGCAGGAGTTTGG GGTAGTGGGTGAGAAGCCTCAGGTTATCAACCCACAGTTTCTGTTAAACCAGAACCAAGTTCAATTCTCTGAGAATCCCT CTTTCTTTGTGCCATTGAGGTACCCTCAAGTGCAAGAGCAGCAAGTTTTCTCTCAGCACATGGTTGGGCACAATTATCAG GCTCCAAGGTTACCCCTTTTGGGTTCTGGACAAGAGATGTTTGTTAAAAGGCCTCAGACACAGGTTCCACTGTTTCCTCA CCATATCCAACAACAGCAATCATTGGTTGTTGCTCCTTCTGGTAAACAGCAGAAGGTGAATCCTACCGGAGACGATGCAA ATCACCAGCTCCAGCAGGCTATCTTTGATCAGCTATACAAGACTGCTGAACTGATAGAAGCTGGTAATCCGGTTCAAGCA CAAGGGATATTGGCGCGGCTCAATCACCAGCTCTTCCCTACTGGTAAGCCTTTTCAGAGGGCTGCTTTCTATATGAAGGA GGCCTTGCAGTTAATGCTTCATTCAAACATTCATAATTTGATGGCTTTCTCACCTATTAGTTTCATATTTAAAATTGGTG CTTATAAATCGTTTTCTGAGATATCACCGGTTCTTCAGTTTGCCAATTTTACTTGCAATCAATCCCTCATCGAGGCTTTG GAAAGGTTTGATCGGATTCATATTATTGATTTCGATATCGGGTTCGGAGTGCAATGGTCCTCTTTTATGCAAGAGCTTGC CTTCAGAAGTAGTGGAGCACCTTCACTTAAAGTCACTGCTGTTGTTTCGCCCACAACTTGCAATGAGTTTGAGCTCAATT TCACCTGTGACAATTTGAATCAATATGCGAAAGACATTAACATGTCATTTGAGTTCAATGTTTTGAACATTGAATCATTG AACTCTCCTACTTGTCCCCTGCCTGTTCATTTCTTTGAAAATGAGGCTATTGGTGTCAATATGCCAATCTCAAGTTTCAC TAATTACCCATCATTGTTTCCTTTAGCGGTTCAGTTTGTAAAACAGCTCAGGCCAAAAATTGTTGTCACTTTGGACCGAA ACTGTGATCGTATCGATTTACCACTTCCCAACAACATAGGCCATGTTCTTCAATGTTATTCAGCTTTGCTTGAATCATTG GATGCTGTAAATGTGAACCAAGATGTTCTTCAAAAGATCGAGAGACATTTCGTCCAACCAGCTATAAAGAAAATCGTACT GGGCCACCATCATTCGCAGGAGAAATTAACTCCATGGAGGAACCTGTTTCTTCAATCTGGATTCTCTCCATTCACATTCA GCAACTTCACAGAAGCTCAAGCTGAGTGTTTGGTACAGAGGGCGCCTGTGCGGGGATTTCAAGTGGAAAGAAAACCCTCC TCTCTTGTTCTGTGCTGGCAGAGAAAAGAACTTATCTCGGTTTCGACTTGGAGATGCTGATCAGCAACTAGCTTGTATTT TAAAGGTGCTTGGTAACTTTGCAGTTTATGTAATTGTTTGTGTAATTTAGGCTTATTGAGGTGATCCATACCCAAATGTT TTCTTAACTAAATGGGTTGGAGTCTACGATTCTATAGTTTTAATAGTAGTATGTGACTTTGAATATGGGTGCTGATTAAC TGATTATGCTCTTCCCCACTTAATCATCTAAGATGGGTAACTGTTTCTTTGTTATCTTGAACACCAAGCAAATTGCTTAG TAAGAAACGAACAATTTAGCTAAGTATGCTGTCTCTATCTTTATCTTCATGTTTTATTGTGTGTTTGAGTTCGCTTTCTT TCAGGTCAACCTCAACCCACCTTAAATTCTCCTATCATGGTTTGTACTGGAAAGCCAAATTTAACTTTCCAACACAATCA AACAGATGAACAAGTGCTGTTTGGTTTTATGCTTCTATTTATGATAAGTCGGAATTG
CDS sequence (LotjaGi3g1v0206600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGCCATGCCCTTGTCCCCTTTTGAGGAATTTCAAGGGAAGAAGGGTGTGTTGTTGGATTTCACCTCATCCTCAGA TTCATTCTCACTGCTTTTACATCATCATCATCATCAGAATCAGCCACAAAAGTGGACCTGCAGTGACAAAAAGGAGGATT TTTGCTATGTGGGCAGCACTGAGCCCAACTCTGTTCTTGACTCCAGAAGAAGCCCAACCTCTCCTACCTCCTTCTCCACA ATGTCCTCCTCTCTTGGCAGCAGCAGCAGCAACAGCTCCGGCAACGGTGGTGGTGGTGGCTCAGCCAACACCACCGCCAC AGCAGTGCCAACTGTCTCAGAGAATCTTCCTCATGAAGACTGGGATGGTCAAGATCAATCTCTTCTGAGACTAATCATGG GTGATGTTGAAGACCCATCTGCAGGATTGACCAAGCTCTTGCAAAGCACTGGTTGTGGGTCTCAAAATGTTGATTTCAGT GGAAATTTTGGTGTTGTGGATCAAGGGTTGAACATGGAAAGTGATATCAACTCTTCTATGCCAGAGAGTTACAATTACCC TGGTTTTGGATTCAATTCTGGGAACATGGATGCTCACAATGCTAAGGTTTCAGAATCCATGTTCTCTTCTTCAGGTAATA TGAACAATCCTCTTTTGGTGTCATCATCTCCTGGTGGATTCAGTTCTCAGCAGCAGGAGTTTGGGGTAGTGGGTGAGAAG CCTCAGGTTATCAACCCACAGTTTCTGTTAAACCAGAACCAAGTTCAATTCTCTGAGAATCCCTCTTTCTTTGTGCCATT GAGGTACCCTCAAGTGCAAGAGCAGCAAGTTTTCTCTCAGCACATGGTTGGGCACAATTATCAGGCTCCAAGGTTACCCC TTTTGGGTTCTGGACAAGAGATGTTTGTTAAAAGGCCTCAGACACAGGTTCCACTGTTTCCTCACCATATCCAACAACAG CAATCATTGGTTGTTGCTCCTTCTGGTAAACAGCAGAAGGTGAATCCTACCGGAGACGATGCAAATCACCAGCTCCAGCA GGCTATCTTTGATCAGCTATACAAGACTGCTGAACTGATAGAAGCTGGTAATCCGGTTCAAGCACAAGGGATATTGGCGC GGCTCAATCACCAGCTCTTCCCTACTGGTAAGCCTTTTCAGAGGGCTGCTTTCTATATGAAGGAGGCCTTGCAGTTAATG CTTCATTCAAACATTCATAATTTGATGGCTTTCTCACCTATTAGTTTCATATTTAAAATTGGTGCTTATAAATCGTTTTC TGAGATATCACCGGTTCTTCAGTTTGCCAATTTTACTTGCAATCAATCCCTCATCGAGGCTTTGGAAAGGTTTGATCGGA TTCATATTATTGATTTCGATATCGGGTTCGGAGTGCAATGGTCCTCTTTTATGCAAGAGCTTGCCTTCAGAAGTAGTGGA GCACCTTCACTTAAAGTCACTGCTGTTGTTTCGCCCACAACTTGCAATGAGTTTGAGCTCAATTTCACCTGTGACAATTT GAATCAATATGCGAAAGACATTAACATGTCATTTGAGTTCAATGTTTTGAACATTGAATCATTGAACTCTCCTACTTGTC CCCTGCCTGTTCATTTCTTTGAAAATGAGGCTATTGGTGTCAATATGCCAATCTCAAGTTTCACTAATTACCCATCATTG TTTCCTTTAGCGGTTCAGTTTGTAAAACAGCTCAGGCCAAAAATTGTTGTCACTTTGGACCGAAACTGTGATCGTATCGA TTTACCACTTCCCAACAACATAGGCCATGTTCTTCAATGTTATTCAGCTTTGCTTGAATCATTGGATGCTGTAAATGTGA ACCAAGATGTTCTTCAAAAGATCGAGAGACATTTCGTCCAACCAGCTATAAAGAAAATCGTACTGGGCCACCATCATTCG CAGGAGAAATTAACTCCATGGAGGAACCTGTTTCTTCAATCTGGATTCTCTCCATTCACATTCAGCAACTTCACAGAAGC TCAAGCTGAGTGTTTGGTACAGAGGGCGCCTGTGCGGGGATTTCAAGTGGAAAGAAAACCCTCCTCTCTTGTTCTGTGCT GGCAGAGAAAAGAACTTATCTCGGTTTCGACTTGGAGATGCTGA
Protein sequence (LotjaGi3g1v0206600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKAMPLSPFEEFQGKKGVLLDFTSSSDSFSLLLHHHHHQNQPQKWTCSDKKEDFCYVGSTEPNSVLDSRRSPTSPTSFST MSSSLGSSSSNSSGNGGGGGSANTTATAVPTVSENLPHEDWDGQDQSLLRLIMGDVEDPSAGLTKLLQSTGCGSQNVDFS GNFGVVDQGLNMESDINSSMPESYNYPGFGFNSGNMDAHNAKVSESMFSSSGNMNNPLLVSSSPGGFSSQQQEFGVVGEK PQVINPQFLLNQNQVQFSENPSFFVPLRYPQVQEQQVFSQHMVGHNYQAPRLPLLGSGQEMFVKRPQTQVPLFPHHIQQQ QSLVVAPSGKQQKVNPTGDDANHQLQQAIFDQLYKTAELIEAGNPVQAQGILARLNHQLFPTGKPFQRAAFYMKEALQLM LHSNIHNLMAFSPISFIFKIGAYKSFSEISPVLQFANFTCNQSLIEALERFDRIHIIDFDIGFGVQWSSFMQELAFRSSG APSLKVTAVVSPTTCNEFELNFTCDNLNQYAKDINMSFEFNVLNIESLNSPTCPLPVHFFENEAIGVNMPISSFTNYPSL FPLAVQFVKQLRPKIVVTLDRNCDRIDLPLPNNIGHVLQCYSALLESLDAVNVNQDVLQKIERHFVQPAIKKIVLGHHHS QEKLTPWRNLFLQSGFSPFTFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 706 | 705 | 1.2E-271 | – | |
| PANTHER | 2 | 706 | 705 | 1.2E-271 | – | |
| MobiDBLite | 61 | 106 | 46 | - | – | |
| ProSiteProfiles | 340 | 706 | 367 | 54.984 | ||
| Pfam | 351 | 706 | 356 | 1.9E-88 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0206600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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