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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0207200 |
| Transcript ID | LotjaGi3g1v0207200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT2G22760.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q1PF16|BH019_ARATH Transcription factor bHLH19; TrEMBL-Plants: tr|A0A151TJ50|A0A151TJ50_CAJCA Transcription factor bHLH25; Found in the gene: LotjaGi3g1v0207200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:30513131..30515307) extracted from Lotus japonicus Gifu genome v1.2.
ATGATATCAAAATTTAATGATCCTACACTCTGTATCAGATCTTGGCCATTGACTTTTTTGTGATAAAATCAAATAAAAAA AGTGTCTAAACCAATTGCCTGAACTTTCTTTTGTTTCAAGTTCATTGGTCCTAAGCATTCTCACTAGTCACTGAAATAGA TATTGCAGCTTGCTAGCTGAATGATGTCACCATCAGAGGAAGAATCATGGACTAGTTGGTTGTGTGACTTGGTAAATTCA ACACGTTTCATGTTTGTTTTCAACTGCATGCATATTTTAATTTGTGAACAAAGCAAAACTAACTCTAGTAACTGAGTTCC CTTTTTCCTCTGTTTTCCCAGGAACTAGAGGATTGCGATTTCCTCAATGAACCCGACACAATCTGGTTAGATGAGAGTTT CCTATCTGAAGACCCTACTCCACTACAAGAGCTGAACTTGCAAACATCTTTCTCTAACGATAGCAACCACTCTTTCTCCT CAGGGGATGATGAAAACAGCTTCGAGAAGCCTTCCAAGGCACTTAAGACGGCTGACACCGCGAACTTCCCACTGCAGAAT GGTGCTTCTCCCTTCTATATTCTTTCATTTAACAATGAGAACGAAGCACCAATTTTGAACTTTGATTCGACCTTGAAGTC AAAAGACAATGCTGTGAATGTGAATGTGAATCAGCATGAGAACAGGTCTAATTTTCCCTCAAAGAGGTCCTTGAATTGTC AAAAGAAGGAACCAAAACGCAAAGTACATGAGAGGGAGAGGGTCAGATCTCCTCACCAAGCTCACGATCACATAATGGCT GAGAGAAAGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCTCTTTCAGTTCTGATTCCGGGCCTCAAAAAGGTTTCAAA TTCAGAATTCTTTCTCTGCTTTTTTTTCTTCTTCTTTTTATAGGCAAATGTTAGTTGTTAGTAATGTTAGTAAGTTAGTT CCTCAGGGCTTTACCCTTCATCGCCCTAACTCTTACAACTTGAGCTAACCCTCCGGAACAGAGTTTTTTCTCTGCTTATT AGTTAATTAAGTGGATACATTTCCTTTTTGTACTGATTATTGAAGGGTATGTATATTATGCAGATTGATAAGGCTTCTGT GCTGGGGGACGCTATACAGTATATGAAACAGCTCCAAGAGCAGGTGAAGCTTCAGGAAGAGCAAATCAAAAGGAAAAGCG CAGAGTCTGTGGTGTATGTTGAGAAATCTGAGTCCTCTGTGGTGGACGATGATGTCTCAAACACATCCTCAAATTCAGGC ACCGCAAATAATAATGTCTCACAGCCTGAAGTTGAGGCAAGGGTGTCAGAGAACAAAGTGTTGATCCGAATTCACTGTGA TAAACAGGAGGGGGTGTTGATGAACATACTCAAAGAGATAGATAATCTTCATCTATCTGTGATCAATAGCAGTGCCTTGC TTTTCGGGACCTCCAAATTGGACATAACCATCATAGCTGAGGTATACAATTTACTACTTCTGCTAAGAAGTATCGATGTC TTATTTTATTAGCCTATTGTCACTTTGCTCCTATATATCTTCCAAGTTTGTAACTATATACATGTATAATTTTGTTGAAC CTGTTGCAAATGCAGATGGATGAGGAGTTCAGGATGAGCGTGAAGGAACTGGCTAGAAAGCTTCGAGTGGAACTCCTGCA ATTCATGTTGCATTCATTCAGTTAATCGTCTTGTCATTAGACAGCCCTCACTTTAATGCATTACATTATGAATTCAATAA AAGAAAGTAGCCACATCGAGTAATAAACAGAGTATAGTAAAATACTCTCTTGTTTTTGGTTTTTTAATATTTTATCGCCG GCAACTATAAGACTAACTTCCTTGGGTGCTTGCTAGGATACCTCAACACTTAGTTGGGGCATGATACAAGATGTGACGTG GACCAATAACATTTAAGTCAGTGTATCTTCTTTTTACCATATATGTTTTAAAATGAATAAAAAATTCAAATACACTATTA GATGTCAGTTTCCTATTGGTACACGTCAAGTCGCGTCAGTCATGTACCATACAATGAGGGTATGGTAGAATTCACCACTT CCTTGGGGTATTTGTCACTTAAGGTCTTTGGACATGCATTAAAGAAAACAAATCATGTTCTCACTTTAAAATTTTCTATC TCATTCCTAATATATCC
CDS sequence (LotjaGi3g1v0207200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGAGAAAGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCTCTTTCAGTTCTGATTCCGGGCCTCAAAAAGAT TGATAAGGCTTCTGTGCTGGGGGACGCTATACAGTATATGAAACAGCTCCAAGAGCAGGTGAAGCTTCAGGAAGAGCAAA TCAAAAGGAAAAGCGCAGAGTCTGTGGTGTATGTTGAGAAATCTGAGTCCTCTGTGGTGGACGATGATGTCTCAAACACA TCCTCAAATTCAGGCACCGCAAATAATAATGTCTCACAGCCTGAAGTTGAGGCAAGGGTGTCAGAGAACAAAGTGTTGAT CCGAATTCACTGTGATAAACAGGAGGGGGTGTTGATGAACATACTCAAAGAGATAGATAATCTTCATCTATCTGTGATCA ATAGCAGTGCCTTGCTTTTCGGGACCTCCAAATTGGACATAACCATCATAGCTGAGATGGATGAGGAGTTCAGGATGAGC GTGAAGGAACTGGCTAGAAAGCTTCGAGTGGAACTCCTGCAATTCATGTTGCATTCATTCAGTTAA
Protein sequence (LotjaGi3g1v0207200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAERKRREKISQQFIALSVLIPGLKKIDKASVLGDAIQYMKQLQEQVKLQEEQIKRKSAESVVYVEKSESSVVDDDVSNT SSNSGTANNNVSQPEVEARVSENKVLIRIHCDKQEGVLMNILKEIDNLHLSVINSSALLFGTSKLDITIIAEMDEEFRMS VKELARKLRVELLQFMLHSFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 172 | 172 | 5.1E-86 | – | |
| SUPERFAMILY | 1 | 60 | 60 | 1.96E-15 | ||
| ProSiteProfiles | 1 | 43 | 43 | 14.678 | ||
| CDD | 1 | 48 | 48 | 1.39438E-9 | ||
| SMART | 1 | 49 | 49 | 1.1E-11 | ||
| PANTHER | 1 | 172 | 172 | 5.1E-86 | – | |
| Gene3D | 1 | 60 | 60 | 3.5E-14 | ||
| Pfam | 2 | 44 | 43 | 1.8E-9 | ||
| Coils | 33 | 60 | 28 | - | – | |
| MobiDBLite | 73 | 94 | 22 | - | – | |
| MobiDBLite | 74 | 94 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0207200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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