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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0207700 |
| Transcript ID | LotjaGi3g1v0207700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Golgi SNAP receptor complex member 1; TAIR: AT2G45200.1 golgi snare 12; Swiss-Prot: sp|O22151|GOS12_ARATH Golgi SNAP receptor complex member 1-2; TrEMBL-Plants: tr|I3SFT9|I3SFT9_LOTJA Golgi SNAP receptor complex member 1; Found in the gene: LotjaGi3g1v0207700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:30605340..30613853) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGGATTCAAATCTGGAGCTGCAGGAATCGGGCTGGGAAGAATTGCGAAAGGAAGCGCGCAAGATCGAGGGCGATCT CGACGTCAAGCTCTCTTCCTACGCCAAACTCGGCGCTAGGTTCACCCAAGGAGGTTCCATTCCCTTCCCTTCCCTTTCCT TTTCCATTGAATTTCAATGTTGATCCAAACAATCATGTTTCTGTGCATTGTATCCAAATTGGAAGAAAACAAATCTAGGT GAAACAAGCACTAAATCTTACAGAAGATAAATGTAAATTGTGTTTTTTTTTCTTCAATTTTTATTATTTTCTGCTTTTTA ATTTCCTGTTTGCAAGTGAGTGGTTCTTAGTTCTCAATGTATTTTAGACTTTTAGTCCTTTGTATTTAGTAATTTTGTTT ATCTAGGCATTGTGCTGTTCTGATTGAATTGTTGCGCTTGCACGTAATATTCTGCGCCTGATTATTGATGAATGATGAGT TAGTTACTGATTAAGTTAACTTACTGACAATTTTTTATAAGAATGAAGCGTTTACCAAACATTAAGTGTTGCCAACCAAT AATTAGATCATTGGTAAACAGGTATAGAAATATCATAATTGGTATTACAATTGTCTATTGTTCATATGGTTATGATATTT ACTTGTTAACCAAGTGGTTTGTCGTTGTGGTTGGGTTTTCGATTTTCAACTCTTGTGAATAAAAAAACTCATTGGCCAGC ACCATAGCGCTTAGTTTGGTGACCGTGGGACGTCTCACGGCTATCAACTGTGGGAATACCTTCGTTAAGACCCAAAAAAA TATATTTACCCTTCATATAGTGCCACACCTCAAAATGTTTATTCTTGATAGAAAGATGTCATTTTTGTAATTATTAGTGA AAATTAGAAGTGAAAGCTATTAGGATTTGGGCTAGGGTTAACTCAACACCAAAAGCTAGATTAAGGGCGAGAATTGTCCA AGCATTATAAGAACTATTCTGAACATGTCTTTAGTTTATGTGGGATTTAAACAAAAACAAAGAAAAAAGTTTTGTCAAAC TGAACAGACCTAAAGTTTGTAAATTGGACAGAAGGAAGTAAATATAACTTATTCTCACTTCCAAATTAATAATCTTGAAG CACCTTGTAATGAATTGAATACATTTGGTCTGGAAGTAGTATGTTTATGAATTATAAAAATATACCTTTTGTTATTAGGT TATGTGGATGGTGGTTCACCACCTCTTGGGTCCAGTAGGTCTTGGAAGTCCATGGAGATGGAAATCCAGTCCTTGCTGGA GAAACTATTAGACATAAATGATTCAATGAGTAGATGTGCTGCATCTGCTGGACCAGCTACTTCTGTAACTCAAAAGTTGG CTAGGCACAGAGACATTCTTCATGAGTTTACCCAGGTATGTTTATATCAAATTCCTATTTTGCGCAGTTCAGTTTCAAGT TTCAGCTTTCAATTTTCATTCAGTTCAAAAAGAATGAATCTCTGGCAATGTTGTAGATTAGAGAAGTATGCACTGTTTGT TTTACATGACACATGATAACTTAGATATTTCTTGTTCAGAGGATGAATATGACACCCCTTGTTCAGTTGTTCTCTAAGAT TTTTTGCATTTTGCTATCTTCTTACTTGAAAATTTGCAATGCTTTGACTTGTTAGAGAGGAGAACGAAGTGCTGGTGGAC TATATTTAAATATTCTGGTTTTAATTTATGAAAGAAATCAGGGTATTGTATTTTAAACGGTATAAGTTTTTTCTAGCCAA GATAAGTTGTACTGGTATTGTATCCAGACATATCAGCCAATAAAACAATTTTAAATTAAATCAGAGGATATCTGTGCATA CATATCTAAGGCATATCATAAGGGTTTAGTATTGGATACCCATATGATGCCGGTACTTTACCTAATTTGTTATATATGGG CTTCATATAGTTATACAATATCATCATTTCGTTTTAATGTGATAATTATTTTTGGTTCTTTGTGGCTAAGCCCTTCCTAC TGTTGTACCAATTTTTTGTTATGTTGAGAAAGCTTAGGAACTAAGAAGATTTTGTAAACTACATCATTAATTTAATTAAA TGGATTCTGCACGAAAAAATGTATATTTACTCTAATTAGTTGACTCGAAGCATATTTACATGTTGGTTGTTATTCTATTC AGGAATTTAGGCGTATTAAGGGGAACATAAACTCAATGAGGGAACATGCAGAGCTTTTGACTTCTGTGAGAGATGATATT TCTGACTTTAAGGTGAATCTTGAGTATGATCTGAGTTAAATTACATAGAGTATTTTCTTACAGAAGTACTAGACTTACCT TCTTCTGGCAGACATCGGGTAGCATGTCACCAAGGATGCAGTTACTACGAGAGAGAGCTGCAATCCATGGAAGTATATCT CATGTAAGTATTTATTTTATGAATTGTAGTACATTTGCTTTTCTTCTACTTAAATTTTCAATTAATGGACATTTCTTTAT TGGCTGGTGATCGCTTGAAAGTCACATCAGAGAGGACAAACCATGGTCTTTCCTTATGGATAGCCCAGAGACCCTCTATT ATTTCCTTTAACACAAAATTTGAACAAATGTCTTCGATAGGAACATAAAGTGTAGTGAAGTTATAAGATATCAAGAAGAA CCCTCTGCTATACAGATGCTATGTTCAGCTCAGCAACATTAAAAAGAACAGAATGAGCAAAAAGAAGAAGAAATGCAGCA ACAAACAAGCAAGACCAGAGCTGAATGAACAGCCTCTCCCCTATGGCCTAAGCACCAAACCCACTCCAAAGTTCCATTAG CTCTCTCCACTGTTGTCCACCTTCTCCTTATTCAATGATGCGGACCCAGTTGCTAGTAATAGTCTATGAAAGCAGGAGGA AGAGGTGTGATGCACCAGATCAGTCCCTGTGAGAGGATTAACCACCTGCTGGGGTAGCAGGGGCGTGGGGATCCATGTGG GTAGAGTTGGAGAGAGTGTGTGGAGGGTGTAAGAAGGGAATCACGGAAGGGGAAGGTAGGCAGTTATTTTCTTTGGGCTT AGGCTGGGAGAGATAGAGACACGCTCTAATTTGCCTCTGTTATTCTTCTTCTTGTAGTTACCTAAACTGGATCTGAGTTC ATCTCAGAATTCCAGAACTGATCAATACAAAAGCATTTTAGTTCAATTTCCTTCTCTGTAATATCTGGTACCTAACATTC ATACTCTCTTGATCCTTGGAGCTGAATGGTATCAACAAGGATGGAAGAATGAGTGGAAGCATTGCAGCGGAGAATAGAGG AGATGAACTGAGAGTGGAAAGGGATGCAGGGGAAATTGATGGGAGAGATGATGCAGGTATTGAGGGCAGGTCTTGCCTGT ATTTGAAGAGAATGGCTGATAGGGAATGGAGATGAAGGAACAGGGTCAGGAAACAGTGATCATGAATGAGAAGTGGGTCA AATGGAAGATTGGATGAGGAGGCTGGAAATACCATAATTCAAAGGCGCTGTTGTCCTGAGCTGTGTTTTGAAATCAATCA AATCATGGATTACTGGAAGGTGGTGCTGACTGCTGTATGCATGGAATGGAAAGTAGTAGACTGGTTCCAGTGGGGGGGAG TCAAGGACGAAGGGAATTTTGAGCTCACTTTCAAAAGAGCTTTGCTGGGTCAATTCCAAGACTCTATGAGAACCCATATG AGGTCTTGATGAGTCTAAGGCAGCCGTTATCTGTGGAAGAGTATCAGGAGTTGGAGCTCATCTCGACACTGATGAGGAGT ATCAGGAGTTGGAGCTCATCTGGTCCTAAAGTAGTTTTAGCTTAGGGGGAGCATTGGTGGAAAGGCTGGAAATGGAGCAG GAAGATATGAGGACTTGAGGAGGATCCAACATGCAAAAATAGGAGGAAAATGACATTTAAGAAGCTGACCAAGGACATAA TTCTGGACAAGATCTGTCAAAGGGTGTGTTTCTGGTGTGATGAAAGGTTCTTTCTTGGGCATGTGTTGAAACAAGTAACT ACACGTTCTGCTATTAGGAGAAGAGGAGCTTGGGGGGGGGGGGGGTTGAAATAAACCTTGCAGAGGAGACAGAAGTGATG GAAGGGAGCACTATGCAGCTACACATCAGCATTGTTGAAGCAGTGACTTCAAAAAGGTCATGAAGTTTATGGTGAGCCAT TTGGGGAAGAAGTTAATTTTGTTGGTAGATTTAGGGGCATCACACAATTTTCTGCCAATTGATATAATGAGGATTTTGGA AGTAAAACCTAAATATACTCATGACTTTGTGGTGGAGGTTGGGGATGGACACAAGGTGAGGAATCAAGGTGTGTGTAGTA AGGTGGAGTTGCAATTATCTTGAAGGTGGTACAATATTTCTATCTGTTTGATTTAGGGGAATTGATGTGGGTTTGGTTTA TGATGGTTGGAGGAGTTAGGGGGAAATTAGGGGATATCCTACTCTGTCCAGAACTATAGCATCACCCAAAGATATGAATT AGTTGAGGATGGAAGCAGAAGCCTTATGTTAAGTTAGAAATGATCAGTGTTACATCCAGAAGTAAAAAATAACATGGAGG CAATCAAATAACTTTTGAAGGAGTATGAGTCATTGTATCATGAGTCTACCAAAGTGCCACCCCAAAAACAATTTGTATCA TGTGATTGTGCTGAAGGAGGAATCTCAAATTCCTAACATCCATCCATACCGTTATGCTTATAGCTAAAAGGTAGAGATTG AGAAATTTGTAACAGGCATGTTGTCGGTAGGGTACATCCAAGGGGAAAGTCTGTTCTCTAGCCCTGTTACTTTAGTCCGA AGAAGGATGGGAATTGTAGGTTTTGTTTGGACTATTGAGCCCTTAGTATTATTACCTTTCCTAATAAGTTCCTAATCCTG TCATTGAGAAGTCATTGATGAATTCAGGGAGCTGTAATTTTCTCAAAGATGGATTTGAAATTCAGGTGCCATCAAACCCG AATGAGGGAGTATGACATGCATAAGACTATCAGAACCCATGGGGAATATTATGAATATTTGGTAATGCCATTTGGGTTGT AACAAATGCCCCTTTTACCTTCCAAGCTGCGATGAATGATATTTCGGCCATACCTAAGAAAGTTATTCTCGTACTTTTTT TTGATACTTTGATCTATAGTTTTGATTAGAGCGCACATCTCAATAATATGTGGCCAGTATTTGAGGTTCTTAATAGAAAT TCCTTATGGGTGAAGTACAAGAAGTTTTTTTTTTTGGGGTATTTGGGGCACATTATCTTTTTAGATGGTATCTAGGAGGA CCCCAACAAGGTCCATTTGCAGCTTGAAAGGGTTCCTATGATTAACAGGATATCATAGAAGTTTTGTGAAGAATTATAGG TTGATTGCAATTTGCAAACCTCTAGTGCAGTTGCTTAGGAAGAACAATTTTAGATTAGAAGATAAGGCTTGGAAGGCATT TGAAGAGACCAAAGCAGCAATGGAGAAGTTACTTACCCCTGATATGCCAAAATTTGATCAACCTTTTGAAATTGAGACCT ATGCTTCAGGTCTTGGGACCGGAAGCTGTTCTCATACAGCAAGGTTGACCTTGGCATTTGTGAGCCAACCTTTCTTTGAA AAATCTAGGGTGAAATCAATTTATGAGAGGGAACTTATTACAGTTGTTTTTGGAGTGCAAAAGTGGAGACAGTAACTATT GGGGCATCACTTTATTATCAGAACTGACCAGAAAAGTCTGAAATTTTTGTTCGTAGTTGGTACAGAGTTATACATGGAGA GCAACAGAAATGGATTTCCAAATTGTTGGACTATGACATTAGATCCAATATAAACAAGGGGCTGGGAATAGAGCAGCAGA TGTCCTATCTCGGGTGATGGAGTTTCGGGTTATTTCTATGATGAATAATCAGGATCTGGGGAGAATTTGGTAGATTTCAA AGTAATGCATAGCCAGGTATATTCATCCATTGGAGTCCTCACCGTTAAAGTAAGGAATCTCCAACCTTCTAAGCTGTTCC TCTGTCCTTTAGCTCTTATGCCCCCTTTTCTTTTCTTTTGCTTCCCATATGCTTCAAAACTTATTTCATTTGCTGTGTCT ACTCACTTGTTCCAGCTTCCAGTTGATGGATTCTAGAAGATCCTAATGAAGCCCTTCCATTTCTTCCTCTTTACTAGTAA CAGCATTTCCATTTCGTCCTCATACACCCAAACCAGCCGGTTTTCTTTTTTCTTCTCTAGCATACATATGTTAAAGGGAC ATCAGTTATACAGCTAGCTGAAGCCCTTTAGTCAGTGACAGATCCAAAATTTTATGCTATAGGGGCAATATAGTTATAAT TTTTTTTCCGAAACACACATAAATTTGTAACTAGACCAACTCGGAAATGACACGAATGTCGTTTCCTTATATTGTTAACT AACCCAAGGTTCAAATAAAAAAACTCTAGAACAGAAGAAAAAAATAACACAAGCACAATGAGGGAGAAAGTCGGAGAATG GAGATGTATTTTGAGAGGAAAAAGTTAAATCACCAAGGAACGATACTTTGCTCTGTTAATTGTTATCCAACAATATATAA TAATATGTTGTAAAAAAACAATAAAAAAATATATTGATTAAATCTGTGAGGATGAAGCAGTGAAGCACAAGAGTTATAGA TTTTTTTTGTTCTCCTTTGTTAACCTTTGAGTATATACTATTTCTATTGTATACTATTAGTACATTTTAGGCTTAATTGC ACTTTTGGTCCCCCACTTATCACTTTTGTGCGGAATACATCCCTAAACTAAAAAAATAGCATTATGAGTCCCCCACTTAT TAAAACGACACTAATATTTGTCCCTCCTCTCTATTTTGTCAAATTTTGGATGCCATTAGCCTACGTGGCATTTTGTAATA CTTTTTTATTCACAAAATTAATTAAGAAAATTAAAACTTATGAACTTTGCATTATCTTCAAACTCAAAACAAACGCAAGC ATCACAATTTCCCCAAACCTCATCAACACAATCCTTGGCTTCTTCATTTCCAGAAATTATTTGGAACAAATTCATTTCTA GAACTTTTATCTTCTTCACAAAACCAAACTGAAATTTATTTCACCCTCTTTTTCCTCTCCCACATCCAGACCTGAAATTT CACAAACTCATCAACTCAAATCAAAATCCCTAACCCTGAAACCCATATTCTTGGATGTAACTCTACATCTCTCTGTCCTT CATCATCCCTAACTTGAACTTTGTTCTTCATTTTCTGATTTTCCGGGTTTCTGATTTTGTTTTCTAGGCAAAAACTGGTG GGGCTTATGAGAGAAAGGGAGGTCGGCGCCGATAAGAGAGAATGGAGATCGCCGGCGGCGAGAAGTAAGGGGAGGAAGAG AATCCTGGCTGGTGTGGTAAAGACGGCGGCGAGAAGCAAAGGAAAGAAAGAGAACCTGGCTGCAGAGTCTTTCACGGAGG CAAGGGCACGTGAAGGGAGGGGGAAAAAAGAACCTGGTTATGGAGGCGTTCGCGGTGGCAAGGAACGGTGACCGCAGCCG TGAAGGGCGTAGACGGAGGAGGCCGTCTTGAAGGGCGATGGTGACCCCATGGTAGCGGTGTGGTCGCATGAATTTGGAGG TAAGAGGCTGAAACGGCGACTCACGCCGGCTCCAATTGGGGTGGGTCTCGGGTGGTGGCTGGGTTGGTTCTGGAATGGTG TTGCAGATGATGAAGATGGTGATAAATATGATGATGAAAATGGATATGAGGAAGATGAAGATGTAGTTAATTTGAAGTAT TGTTTTTTTTAATTAATTATGCCAATTAATAAATGCCACATAGGCAAAAAAACATTATTTTTTTGACATAAAACGGTAGT TTTGACAGAATAGAGAGGGAGGGACCAATATCAGTGCCGTTTCAATTAGTAGGGGACTTGAAATGCTATTTTTTAAGTTT AGGGACGTATTCCGCACAAAAGTGATAAGTGGGGGACCAAAAGTGCAATTAAGCCTACATTTTATCAAAATTTTATGGAG CAACTGCCCCCTCTTCTCTAAGTTAGATCTGCCCCTGCTTGTAGTTAAGATTTGTCATATGGTGTTTTTTTTACAGATGT TTTTAACCTACATATCATATGGTGTCTTTTAAGTCAGGAACATCTATTTGTCTTATATGTCATCGGCTACGTTCTTTTTG AGATTCTACACATTGACTTTCCCTTCATTTTCTCAGATAGATGATGTGATTAGTCAAGCTCAAGCAACAAGATCTGTATT GGGTTCTCAGAGGGCATTGTTTGGTGATGTTCAGGGGAAAGTGAAGGTTCTTGGCGACAAGTTCCCCATTATTCGAAGCT TGCTTGGTATTTTTGTGAAGTAGTTTTTATCTTTTCTAATTTGCCGTTGATTTTTCACATGTCACCCTTTTACCTCATAA TTCGTTGCTCTGGCAGGTTCTATAAGAAGGAAACGCTCAAGGGATACCCTTATTCTGTCAGCAGTAATTGCTGCCTGTAC ATTGTTTCTCATCATTTATTGGCTCTCAAAGTAA
CDS sequence (LotjaGi3g1v0207700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATGGAAATCCAGTCCTTGCTGGAGAAACTATTAGACATAAATGATTCAATGAGTAGATGTGCTGCATCTGCTGG ACCAGCTACTTCTGTAACTCAAAAGTTGGCTAGGCACAGAGACATTCTTCATGAGTTTACCCAGGAATTTAGGCGTATTA AGGGGAACATAAACTCAATGAGGGAACATGCAGAGCTTTTGACTTCTGTGAGAGATGATATTTCTGACTTTAAGACATCG GGTAGCATGTCACCAAGGATGCAGTTACTACGAGAGAGAGCTGCAATCCATGGAAGTATATCTCATATAGATGATGTGAT TAGTCAAGCTCAAGCAACAAGATCTGTATTGGGTTCTCAGAGGGCATTGTTTGGTGATGTTCAGGGGAAAGTGAAGGTTC TTGGCGACAAGTTCCCCATTATTCGAAGCTTGCTTGGTTCTATAAGAAGGAAACGCTCAAGGGATACCCTTATTCTGTCA GCAGTAATTGCTGCCTGTACATTGTTTCTCATCATTTATTGGCTCTCAAAGTAA
Protein sequence (LotjaGi3g1v0207700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMEIQSLLEKLLDINDSMSRCAASAGPATSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLTSVRDDISDFKTS GSMSPRMQLLRERAAIHGSISHIDDVISQAQATRSVLGSQRALFGDVQGKVKVLGDKFPIIRSLLGSIRRKRSRDTLILS AVIAACTLFLIIYWLSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 156 | 156 | - | – | |
| PANTHER | 1 | 177 | 177 | 4.8E-104 | – | |
| PANTHER | 1 | 177 | 177 | 4.8E-104 | ||
| Pfam | 88 | 152 | 65 | 4.3E-17 | – | |
| Phobius | 157 | 176 | 20 | - | – | |
| TMHMM | 157 | 176 | 20 | - | – | |
| Phobius | 177 | 177 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Golgi membrane | The lipid bilayer surrounding any of the compartments of the Golgi apparatus. | ||
| Cellular component | Cis-Golgi network | The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum. | ||
| Biological process | ER to Golgi vesicle-mediated transport | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0207700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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