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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0212100 |
| Transcript ID | LotjaGi3g1v0212100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.2 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|F4KIF3|CSA1_ARATH Disease resistance-like protein CSA1; TrEMBL-Plants: tr|G7JDC6|G7JDC6_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0212100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:31824306..31827734) extracted from Lotus japonicus Gifu genome v1.2.
TTAAAATATACACCAGCAGACTTCCATCAACAAAGTTTAGTTGCCATCGACTTCAAATATTCCAATCTGGTACAAGTTTG GAAGAAGTCTCAGGTTTCTTTTTTATATTCTTTAAAAGATAGAGTTTGAAGATTACATATCTTACATGGACATTTTAAAC CGACTTTTGGGTGATATTTTTTCTTTTTCGTCTATTTTCGCTGCTTTCTCTAACATAGGTTTTCAAATCTCTTTGTGCCA GATGCTGATGAAGCTGAAATTTCTCAATCTTAGTCATTCTCCAAACTTAAGACAAACTCCAGACTTTTCAAACTTACCAA ATCTTGAAAAGTTAGTACTGAAAGATTGTACTAGTTTGTCTTCGATTTCTCATACTATTGGAAATCTCAATGAACTGCTT CTTATAAACTTGAAAAATTGTACAAGCCTTCGTCAACTTCCAAGAAGCATCTATAAGTTGAAGTCATTAAAAACACTCAT TTTGTCTGGGTGTTCAAAAATTGACAAGTTGGAAGAGGATATGGAACAAATGGTATCTTTAACCACCTTGGTTGCAGATA ACACTGGTATAACAAGAGTTCCCTTTGCTGTAGTGAGATCAAAAAGCATTGGATATATATCTCTGTGCGGCTATGAAGGA TTCTCACGAGATGTATTTCCTTCAATTATACAGTCTTGGCTGTCTCCAGCTAATAATGCTTTATCCCAAGTTCAAACATC TGTTGTGGGTATGTCATGTCTTGATCTATTGGATGAACAGAACAGTAGTTTCTATGGTCTATTATATGCTCTAAAAGATA TTCAGAAGCTTCAACGCCTATGGGTGAAGTGTGACTCAGATGTTCAGCTGAATCAAAGTATAGAGAGGATTTTGGATACC TTAAATACCACAATTTGTGGGGAATTAGAAGCAACCCCAAGCACATCTCAAGTCTCAGCCAATAAGTCCACTTTAGTTGA TTGGCACAACCAAGTTCGCATTTCAAGGTCAAAAAAATCATTGACATCTCTTCTGATACAAATGGGAATGAACTGCAGTG TTGCTGATACTCTTAAAGAAAGCATTTTACAGGTTCTCTCTCCACTTTACACACACACCACCTTTACCTGATTAAAGTAA GTATATGGAACTAGGGCTGCCTTATTAATGTTTTAAGTATGAGAAATGCTAGCCTTTACACACACACCACCACCTTGAGA GTTGGTTAGACATCACATTAGTTTTTAATTTAGATTAACTCTTGTGATAATTGATGTTTTAACATTGGTATTAAAAAATA ATTATACATCAAAACTTTATACTTAGTACTTACAAATGGGCATATGTAACAGTCTTGGGGCTTGTATGATTTTGTCTGTT TTGTACATTTAAATACTATTTTATAAAACTTGTTTTACAGAAGAAGAAAAGAAAAACCGTTTGAAGTTTGAACAAGATGT TTTGCAAAGCGTAAAGAAATGTGACTTGATAACTAAGAACAAAAACTGAAAACATCTGAGATGCTATGAGATTATAGTTT AAAAACTCTAAGTAGAACTATTTATAAGAAGAGTTTTTTGAAGCAGTCTATATCAAACAAGTTTTTTCTCATTTTCTATT TTTAAAAAATAAACTGTTCAAAGAGACCCTTGCTATTTTTAAGTACAATATGAATTTTTTTTTATTTCCTGAAGATGGCA TAGAGTACAAGTTAAATTTACAAGAAAATAGGTAATTATGTTTTACGGAAAATATGTGTTTAACATTTAAATTAAATAAT TTTAGTATCAAGATATTCAATATTTTTATTTTTTATATATGTGTGCATGTTCATTGAACAGAAAATGTCTCCCATCGAGT TTGGTTTACTTCCGAATAACATCTATCCTGATTGGCTAACATTCAATAGTGAATGTTCTTCTGTGATTTTCAAAGTCCCT CAAGTGGATGGGCGCAACTTGAGGGCAATAATGTGCATTGTTTATTCTTCTTCCCCAGACAAAATCACATCAGAAGGCCT TAAAAATGTGATGTTGATAAATTACACAAAAAACACCATTCAGCTCTATAAGAAAGATGCATTTGACTCCTTCGATGAAG AGGAGTGGCAGAAAGTAGTATCAAATATAGAACCTGGTAACAAAGTGAAGGTGGTGGTTGTTTTTGAGGACAGTTTCTCT GTGAAGAATACAACAGTTTATCTCATATATGATGAACCAATTGACAAAAAGGCAGAGCACTACCATGAGCCTGATAAGAA TGCTGTTGTTTCCAGCGGTGATGAAAATGTAAGTAATAATAGTCTGAGATTTTGCGCATTCGAAATGAATGGTTGTTCAT ATTGTTATCAAAGCAGAATTTCAGTACTGAATTGGAACTGTAAAACAGTTGTGCATGTAACCTCATAAATCTGGTCATGT ATGTTGGACACACTGAACTGCTTCAACTGCTAGAATGGATAAAAAACTTTGCACATTTGAACTTTAAGTTTATTTCTTCA AATAGCATTATTCCATTCACGAGGTCATCCCTTTCTCTTTGTTTATGGTTTTAGATATTTGGTAGACTCTTCTTCATACT CCCTTCCCTAGTTAGAGCCGTTCTAACTTCACAGCCTTTCTGGTTCGGTCTGGCTGGTATCTTGATCGGGTCTCGCTGCT TTTCTGATCGGCGAAGGAGTTATAAACCCATTTTAAGGTTTGAACCCATTTCTTTTGCGTCCACAAAATATTTGTATGTT AAAATTAACTTTTTGCTGTTTATGATATCCTTTGAAGTTTTCCTAAGAAGTTATCCATGCTCAGTAAAAGGCTATCATTC ATTTAATATATGTTGAACATTAGTCCTTCCTTTGGGTTTATATTTGGTCCATCTGAACCATAACTCTGAATCAAGGTCCT GATTATTCATTTCCCTATGAAGTTCATGATTGCATGTTTATTCTTCATAATGAAGCTTTGTTTCAATATTGATTTGATTG CTTATATTTGAGATACAACTTCTGCTATTTTATTGCTCTGTCTGAAATAGGGAAGTATCATCCGAGAGCGACCAAGGATC CAATAATCAAGTAGTAAGAGAAGCAACTCTCTCAGGTGATGTACATGATGATATGAAAAGGTGGGATGAAAAAAAGGAAT AAACCATTCCAATATCGATGGGTTGGTGCAAATCTTGAGGCTCAAGGAATCAATTCTGAGCATTTCAAATTTCTGGAAGT CTTTAGACGAATTTCCAAAGCTAGAGGAGCAAAAATTGATTGAAGACAAGAGCCACAAGAATGGAGGTAAAAGCTGAAAA ATATGTATTATTCTTCAGAGCCAAACTAATCCAAGGTGGAGTGCCTTTCTTCGTTCTTCATGTCAATTTATGTGTTGATT GGCAATGGTTTTTATGTTACTAGTTATAGTTTGTGTTTTACATTCCGCTGTGTTTCAAGTCCACATATG
CDS sequence (LotjaGi3g1v0212100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGATGAAGCTGAAATTTCTCAATCTTAGTCATTCTCCAAACTTAAGACAAACTCCAGACTTTTCAAACTTACCAAA TCTTGAAAAGTTAGTACTGAAAGATTGTACTAGTTTGTCTTCGATTTCTCATACTATTGGAAATCTCAATGAACTGCTTC TTATAAACTTGAAAAATTGTACAAGCCTTCGTCAACTTCCAAGAAGCATCTATAAGTTGAAGTCATTAAAAACACTCATT TTGTCTGGGTGTTCAAAAATTGACAAGTTGGAAGAGGATATGGAACAAATGGTATCTTTAACCACCTTGGTTGCAGATAA CACTGGTATAACAAGAGTTCCCTTTGCTGTAGTGAGATCAAAAAGCATTGGATATATATCTCTGTGCGGCTATGAAGGAT TCTCACGAGATGTATTTCCTTCAATTATACAGTCTTGGCTGTCTCCAGCTAATAATGCTTTATCCCAAGTTCAAACATCT GTTGTGGGTATGTCATGTCTTGATCTATTGGATGAACAGAACAGTAGTTTCTATGGTCTATTATATGCTCTAAAAGATAT TCAGAAGCTTCAACGCCTATGGGTGAAGTGTGACTCAGATGTTCAGCTGAATCAAAGTATAGAGAGGATTTTGGATACCT TAAATACCACAATTTGTGGGGAATTAGAAGCAACCCCAAGCACATCTCAAGTCTCAGCCAATAAGTCCACTTTAGTTGAT TGGCACAACCAAGTTCGCATTTCAAGGTCAAAAAAATCATTGACATCTCTTCTGATACAAATGGGAATGAACTGCAGTGT TGCTGATACTCTTAAAGAAAGCATTTTACAGAAAATGTCTCCCATCGAGTTTGGTTTACTTCCGAATAACATCTATCCTG ATTGGCTAACATTCAATAGTGAATGTTCTTCTGTGATTTTCAAAGTCCCTCAAGTGGATGGGCGCAACTTGAGGGCAATA ATGTGCATTGTTTATTCTTCTTCCCCAGACAAAATCACATCAGAAGGCCTTAAAAATGTGATGTTGATAAATTACACAAA AAACACCATTCAGCTCTATAAGAAAGATGCATTTGACTCCTTCGATGAAGAGGAGTGGCAGAAAGTAGTATCAAATATAG AACCTGGTAACAAAGTGAAGGTGGTGGTTGTTTTTGAGGACAGTTTCTCTGTGAAGAATACAACAGTTTATCTCATATAT GATGAACCAATTGACAAAAAGGCAGAGCACTACCATGAGCCTGATAAGAATGCTGTTGTTTCCAGCGGTGATGAAAATAT ATTTGGTAGACTCTTCTTCATACTCCCTTCCCTAGTTAGAGCCGTTCTAACTTCACAGCCTTTCTGGTTCGGTCTGGCTG GTATCTTGATCGGGTCTCGCTGCTTTTCTGATCGGCGAAGGAGTTATAAACCCATTTTAAGGGAAGTATCATCCGAGAGC GACCAAGGATCCAATAATCAAGTAGTAAGAGAAGCAACTCTCTCAGGTGATGTACATGATGATATGAAAAGGTGGGATGA AAAAAAGGAATAA
Protein sequence (LotjaGi3g1v0212100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLMKLKFLNLSHSPNLRQTPDFSNLPNLEKLVLKDCTSLSSISHTIGNLNELLLINLKNCTSLRQLPRSIYKLKSLKTLI LSGCSKIDKLEEDMEQMVSLTTLVADNTGITRVPFAVVRSKSIGYISLCGYEGFSRDVFPSIIQSWLSPANNALSQVQTS VVGMSCLDLLDEQNSSFYGLLYALKDIQKLQRLWVKCDSDVQLNQSIERILDTLNTTICGELEATPSTSQVSANKSTLVD WHNQVRISRSKKSLTSLLIQMGMNCSVADTLKESILQKMSPIEFGLLPNNIYPDWLTFNSECSSVIFKVPQVDGRNLRAI MCIVYSSSPDKITSEGLKNVMLINYTKNTIQLYKKDAFDSFDEEEWQKVVSNIEPGNKVKVVVVFEDSFSVKNTTVYLIY DEPIDKKAEHYHEPDKNAVVSSGDENIFGRLFFILPSLVRAVLTSQPFWFGLAGILIGSRCFSDRRRSYKPILREVSSES DQGSNNQVVREATLSGDVHDDMKRWDEKKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 237 | 237 | 3.7E-21 | ||
| PANTHER | 1 | 430 | 430 | 1.2E-123 | – | |
| PANTHER | 1 | 430 | 430 | 1.2E-123 | – | |
| Phobius | 1 | 430 | 430 | - | – | |
| SUPERFAMILY | 2 | 197 | 196 | 1.02E-19 | – | |
| Phobius | 431 | 457 | 27 | - | – | |
| TMHMM | 437 | 459 | 23 | - | – | |
| Phobius | 458 | 510 | 53 | - | – | |
| MobiDBLite | 476 | 510 | 35 | - | – | |
| MobiDBLite | 476 | 492 | 17 | - | – | |
| MobiDBLite | 494 | 510 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0212100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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