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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0215900 |
| Transcript ID | LotjaGi3g1v0215900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Otu domain-containing protein; TAIR: AT2G38025.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810; TrEMBL-Plants: tr|I3TAS0|I3TAS0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0215900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:32419359..32422241) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGTGAAAGAAGTCATATGTGAAAATGAAGGAGAACGTAAGTTATATGAAGAAGCTCTCATTGCCATCACGGTTGA TGAGCCTCTACCACGGTATGTTTTGGAAACATTCATAGAAAGTGAAGATCTTGAAGTTTATATTAGTTTGTATTTGATGC CATGATTAAATGTGTTACTTTGCAGTTACTGCAAACGAATTGTGCGATCTGATTTCTGGGGAGGAGAGTCAGAGCTACTG GTAAATACTTTCTTTATGCTAACTTCTTAAAGCCTGAAAACCCTTTTATCTTTTAAGGATTAAATACATTTCATAATTTG GAGTTTATATCAGGTTTCATTTAATTTTGCGTAACAGGTCTTCTAAGTTGTCAAACAATTCCAATATTATTTACATGTCT TTCTGTGCCATATGAATATAAAAGTTTGTTAAGATGGAGGACTTTGTATTGTTCTATTCTGTCAGAGCATGATATCAGAG CAGTACAATACTCCATCACCTGTGCTTTCACTATCCCGCTGTCTAAGTTCCTTCAATTCTGGACCTCTGTTTTATTTTTG CTATGTTTTTCTTCTCGTTGATGAGCCATCCCTCTTGTTGTGTTTTTTCTTCATACACTCTCTTTTCAATTCCTTTTATA AGTGGGTTTTCTGACTCTTCTTCCACCATCCAGCCACTCTTCACCGCGATAGAGCTCGGAGACCAGTAGAAGCAGTTGGT TGAAGACATACTATCGGTTGCAATTTTTGGTGTGCGTCCCCTGTTTATGCATTTTCAGTTTTTACATTACCCGCTTCCGT AGAACAATCTAGGCCTTTGTTGCAGCCGTCATATGTCAGCTCCTGCACTACAACCCTAGGTTGCCTACAATGCAGCCATC GCATACCTGCCTTCATTTTTTTTTCTAAAGCAGAATATTATTGAAATTAAGAATTGAGATACAAAGCCTCTCAATAAAGG CCAAATACAGAACAACGAAAAGACTTTATCCAGAAAAAGAGTCCGCCACAGTATAAAAAAACCAAAACCAAACAGCACAA AATGCTTCCCAAACAAAACACGAAACAGTGCTAAAGGCTTCCATATTTGATAGGATGAAACCTCGTGAGATGCTCCGCAC ACCCCTGAACTGCCTCGTGGTCAGTCCCCTTTGCTCCTATATTATACCTGATTGCTGGGGAACCTTTTTAGCACATTTTT TTTTGGGGGGGGCGGGGGGGTTGGTTAAATATATGAAAAATATCATCCCATCATCTCCTATCAATTTCAGTTTCTCTTAT CTCTTTTTCCTCTCTTAATAGTTAATACCCAACAAAAAATTAAAACCTTATAATTTCAACATTATTCAAATTGTTTCTCC TTCAATGTGATTGTTGGAGCTTTAAGTTTAATGAGGGACTAGAACCTATACAAATTTACATTATCAAGGGGGAATTAGAC TCAATCTAGCATTTAAATGATTTAAGTTTAATATCATCACCAACAATGATCAAGCCTTTCCCACTAGGTGGAAGTTGGCT ATAAGTATAAAGCAACGCATTATAGTGTGTATACTGTAGTCCTTTTAACTCTAAATCTCTCTAATCAAATTGTCTATAAT CTGCATCCACAATTACTTCAGTATTTTTTGTTGTTCTGCAGTTTACTAAAGACATATAATAGGAAATTGAAACTGCCTAA TCCAGTCTAGACAATGGGCACAACAGGAAAATTTCAGTAGTAACAGAAGTAAAGTGCACAGACCGCTGACTTAGGGCTCA ATCCTCATATTCAGGGTGTAGATTTTTCAGTTCACCCACAGATTACTGAAAGTGATATTCTAATATATTTAGGTGGAGCT TCTGAGTTACACTGCCATTGGGCTGGGACCTTCAAACAAAATTTCATCATCATTTATTTGGATACTTGGTCATACTTTTA ATCAGTTTAGGTCACATGTTTCCAGGTGGATACACAAACCCCATGAATAAAAATTCAGATACTGATCAATGTCCATATTC TGGCAGGTACTGTCAAAGTTATGTAAGCAGCCAGTTATTGTGTACATACCAGAGCATGAGGTATGCCTTCAGAAATACTT ACTGGCTTGATGTTAATCTATTTTACTTGTGAAGGAAGAACTTGTAATTTGTGTGCATTCCCCCACTGATTTTTATCATG ATGTATGCGCTACAAGGCAGGTTACATTTTCTAGTCAAATAGTTATAGACTTTTATGTCAACAACTCGGGTAACTTTCAA AATTAAATGTGAAAATGTTATTAAAAGGAAGACATATACAGCATTTTCAAGCAAATTAAGGAGCATTTTGAATATCTTAA CGACATATACAGGAGCACCAAATGAATAATTTTGTTGTATCATTGGGCATTCATAACCTGGCCTTGTCCTTCCATTGCTG CTGATCTGTGGCATTAACTTCTATGAAGATACTTGTATATTCTAACCTTATGATATAATAAGGGCTTCAATTGACGAGGC TTTTACAGGACTAGTCCTTCTATGTTCATTTTGATTTTTGAATGAGAGATTTTAGCCATTCAATTGCTTTTTATTGTGTT TATTATTTTAATGAACTCAGGGAAATGGCTTTGATAATTAATAAAGATTAACTTAGCCATGTTGTGTATATATTCTTGCA CCTAGTTTTTAAAAACCTCTGTCCAAACTCATATAGGCGTGTATCCTCTGATTTATGTTCAATTTATCTACTAACCTATC CTATTTGTCTCTTTGTAAACTGAAAATGCAGCATAGAGGCAGTGGTAGGGGATCTGGTTTTATTCCCATTGCAGAGTATG GAAGTGAATTTAGAAAGCGCTCTAGCAGAAAGGTTGTGAGGTTATTGTTCAGCGGTAAGAATCATTATGATCTTCTGATG TGA
CDS sequence (LotjaGi3g1v0215900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTGAAAGAAGTCATATGTGAAAATGAAGGAGAACGTAAGTTATATGAAGAAGCTCTCATTGCCATCACGGTTGA TGAGCCTCTACCACGTTACTGCAAACGAATTGTGCGATCTGATTTCTGGGGAGGAGAGTCAGAGCTACTGCATAGAGGCA GTGGTAGGGGATCTGGTTTTATTCCCATTGCAGAGTATGGAAGTGAATTTAGAAAGCGCTCTAGCAGAAAGGTTGTGAGG TTATTGTTCAGCGGTAAGAATCATTATGATCTTCTGATGTGA
Protein sequence (LotjaGi3g1v0215900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVKEVICENEGERKLYEEALIAITVDEPLPRYCKRIVRSDFWGGESELLHRGSGRGSGFIPIAEYGSEFRKRSSRKVVR LLFSGKNHYDLLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 93 | 93 | 2.8E-35 | – | |
| PANTHER | 1 | 93 | 93 | 2.8E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Thiol-dependent ubiquitin-specific protease activity | Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Biological process | Ubiquitin-dependent ERAD pathway | The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome. | ||
| Molecular function | Ubiquitinyl hydrolase activity | Catalysis of the hydrolysis of ubiquitin from proteins and other molecules. |
Expression pattern of LotjaGi3g1v0215900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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