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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0216100 |
| Transcript ID | LotjaGi3g1v0216100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT3G54120.1 Reticulon family protein; Swiss-Prot: sp|Q9M392|RTNLL_ARATH Reticulon-like protein B12; TrEMBL-Plants: tr|V7AK87|V7AK87_PHAVU Reticulon-like protein; Found in the gene: LotjaGi3g1v0216100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:32430654..32433520) extracted from Lotus japonicus Gifu genome v1.2.
AGGAAAAAACCAAAAAGAATTAACAGTAAAGGACAAAAAGGTCCCTTCGAGATGAATTGGGTGCCGGGTCTTCAAGGAAG AGGGTGAAATGAAAACAAGGGAAGATATTCAAGAGGGAAAATGAAATAATCAAAGCATAGACTTTGTTTTCTTTTCTGTT CTGTGGGTTGGCAACAGAGACTAAAAAGCAAAGAATGGCACTGCACTTTTAGGCTGTAAACTCAGACATTCAGCCCCAGT TTCCTTACACTACATAATTCATTCAGGGACCACTGCTACAATAAAATTCAAAAGAATCAGAAAGAAAAAGGAAATATTTA AAAGAGAGGTAAGGTGAATAAATCTGCTAAAGTTCAACATAGTACACTGTTTTTCTGCCTTTTCTGAGGATCATCTCAAA GTTCTCTGCTTTTTGGTGAGACAGATAGATCCCTTGCTGGGTTCAAGTTCTTATCTTCAGCTTCTACACAAAATGGTTTC ATCTGGTAGATTGTTCAACAGGGAAAGAACTCTTCATCAGATCCTTGGAGGTGGTCAAGGTATGCCATTTTCTCATTGAT TTGATTAAAGTTCTTAACTTCATTGATAATAGCTATATGAGGTGTGCTTGTATCTGTTGTCTTCTAGTTTTTTTTTTGTT TTAATCAATGCAATGCTTCAATGCAGTTGCAGATATAATACTGTGGAGGAGGAAGAATCTGACTGTGTGGATATTGTTGG TCACACTAGCTGCTTGGGTTGTGTTTGAAAGATCTGGTTATACTCTTTTGTCTCTTGTTTCAAATGTTCTCCTCCTCCTC ATTGTCATTCTTTTTCTTTGGGCCAAATCAGCAGCAATTCTCAACAGGTAGTAATATTCACACTAATTGTGTTTCCTTTG GGTATCATTGACTTGCATCTTCTTCCCTTGTGCTGTTTTGAAACCTGAAGTGTGTAAGAATGATAAAGCATATATAGGTA GATGATTGGTACTTCAATTTAGATTCTGATCTGAAGTTATTATGTCTTCTAGTAATTTGACTTTATTTATTGGTCCAAAG CCATTCCTTTTAGTAGCTGTAGTTTGTGTAACATGTTTAGCACCTTGATGCAGCATCATTGCTATGCCTGCTTCTCTTGC TTGATCAGCACCAAAAATTTTCTGTTGTCCAACTCCACTCACTATCCTTTCTGCTCCAGAACTTTAGGCAACACAAGAAT CTACTATTGAAAAGCACTTTCCCACTCCGGTTTGCTAGTTATATCCCTTAACTGGAGATCAATGTAGCATAGGGAATCAA GACCAGATATTTACATTTAGTTAAAGTTCATATTGGTTCTGAAGATCCAGATACCTTATTTGTATCTCTTATTTCCTGTA AAAAAATAAATAGTCCTTAAACTAATTAAGTCTAGTCACTGTACATTGAGTACTATGGAAATATGTAGAGTAAGACATTT ATTTGGTCCTCCAAGGAGTAGGTTGTAACTACATTAGTTCTTCATAGATTTTAGTCACCAAATTAGTCTTCAAAGATAAT GTCATGATATCCTTCAAAGCTACAAAATGGTCACTAATAGTGTGTTTGGTTTAAGCTTTCACAACCCAATTTAGTTTCTA AAATCTATTATAGCAAGAAGCAACAAGTGTAGCTTTTCAGTAGAAGTGCATTGGCTTTTGTGTCCGTCACTTAACCAAAA AGATGCTTCATGAGACCTTTCCTTTAAAAAGATGCTTAGTTTTGACACCCTAGTACTGGTATTAGCATTCATCATTCTTA ACATGCCATGTTTTGTAATTTGCTCCCATAATTTTTGGGTTCCAAGTTCCAACAACACATAGATGTGAATGGTTTACAGA TTATCAACAAAATTTACAAAACCAAGTTAAACTGTTATTTTACTTTTGACAGACCTGCTCCACCTCTACCACAGTTGCAC CTATCAGATGAAATGGCAAATGAAGTAGTAACTTTTATCCAGACCAGAGTTAATAATCTGTTTTCAGTTTCTCAAGATAT TGTTCTGGGTAAAGACTCAAGGCTGTTTCTGAAAGTAGCTGCTTGCCTCTCCTTAATTTCTGTTGTTGGTGGCTTGACTG ATTTCCTTACCCTGGCATATACAAGTAAGTTTGCAAGCATCTTTAGATTTGGAAATTCTTCTTTATGTCAAAATCAATTA TGGGAATTAGCTTCAGGATGCCAGAATTGATTGAGGTAAAATAACTGATCAAAACATGCTATCAGAATCAATTAGTGTTT GTTTGGATACTAGTTAAGTTCAACGTGAGTGCAAACATCTGTTTGCGCTAGTGTTAACAGATATCCAAACATAGTTTTAG TCTCCAGTTTTTCATAATGAAGTAGCACATTAATGAAAAAGCATTTGTTTTTGTTGTGGTTTGATTATGTGGCAGGTCTC TTAATTGTTCTTACTCTTCCAGCACTCTATGATAGATGTGAAGATTACATAGATCGATATGTGTTGAAGTGCTACAGCAA ACTTTGCCAATTGTATGTTAAAATAAATGAAGAATATGTTAGTAAAGTCCGATATTGGATTCTGGAGAAGAAAAAGTTGA GCTGAATTTGTTTTTTCACAAGCATTTTGATGAGTTCTTTGATTACTCTTTTAAAACATTCCTTACATAATTATTGGTGA GATTGTGAATGTGAGTTTAGGGGATGGTATCTTCAACCCCTTAAAAAATATAGCTTCTTCCTTTCACATTTTCTGACTTC AATGATGGGTTCCCCCTTGGTACATAATGAAGGAACTCTTAAGCTCGACGTGTTCTCCACTAAGGTTAGGGTGTAAAGAT CAGTCCTTAAGTTTGGGAAAATATTTATTTTATTTTCTATTTTTAACAATGATCAATATTGTTCTAA
CDS sequence (LotjaGi3g1v0216100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCATCTGGTAGATTGTTCAACAGGGAAAGAACTCTTCATCAGATCCTTGGAGGTGGTCAAGTTGCAGATATAAT ACTGTGGAGGAGGAAGAATCTGACTGTGTGGATATTGTTGGTCACACTAGCTGCTTGGGTTGTGTTTGAAAGATCTGGTT ATACTCTTTTGTCTCTTGTTTCAAATGTTCTCCTCCTCCTCATTGTCATTCTTTTTCTTTGGGCCAAATCAGCAGCAATT CTCAACAGACCTGCTCCACCTCTACCACAGTTGCACCTATCAGATGAAATGGCAAATGAAGTAGTAACTTTTATCCAGAC CAGAGTTAATAATCTGTTTTCAGTTTCTCAAGATATTGTTCTGGGTAAAGACTCAAGGCTGTTTCTGAAAGTAGCTGCTT GCCTCTCCTTAATTTCTGTTGTTGGTGGCTTGACTGATTTCCTTACCCTGGCATATACAAGTCTCTTAATTGTTCTTACT CTTCCAGCACTCTATGATAGATGTGAAGATTACATAGATCGATATGTGTTGAAGTGCTACAGCAAACTTTGCCAATTGTA TGTTAAAATAAATGAAGAATATGTTAGTAAAGTCCGATATTGGATTCTGGAGAAGAAAAAGTTGAGCTGA
Protein sequence (LotjaGi3g1v0216100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSSGRLFNRERTLHQILGGGQVADIILWRRKNLTVWILLVTLAAWVVFERSGYTLLSLVSNVLLLLIVILFLWAKSAAI LNRPAPPLPQLHLSDEMANEVVTFIQTRVNNLFSVSQDIVLGKDSRLFLKVAACLSLISVVGGLTDFLTLAYTSLLIVLT LPALYDRCEDYIDRYVLKCYSKLCQLYVKINEEYVSKVRYWILEKKKLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | - | – | |
| PANTHER | 6 | 209 | 204 | 8.2E-99 | – | |
| PANTHER | 6 | 209 | 204 | 8.2E-99 | – | |
| ProSiteProfiles | 23 | 209 | 187 | 29.319 | ||
| Pfam | 23 | 177 | 155 | 8.0E-47 | ||
| TMHMM | 34 | 49 | 16 | - | – | |
| Phobius | 34 | 49 | 16 | - | – | |
| Phobius | 50 | 54 | 5 | - | – | |
| TMHMM | 53 | 75 | 23 | - | – | |
| Phobius | 55 | 75 | 21 | - | – | |
| Phobius | 76 | 126 | 51 | - | – | |
| Phobius | 127 | 144 | 18 | - | – | |
| TMHMM | 127 | 144 | 18 | - | – | |
| Phobius | 145 | 149 | 5 | - | – | |
| TMHMM | 148 | 165 | 18 | - | – | |
| Phobius | 150 | 168 | 19 | - | – | |
| Phobius | 169 | 209 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0216100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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