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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0217700 |
| Transcript ID | LotjaGi3g1v0217700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SOUL heme-binding family protein; TAIR: AT2G37970.1 SOUL heme-binding family protein; Swiss-Prot: sp|Q9SR77|HBPL1_ARATH Heme-binding-like protein At3g10130, chloroplastic; TrEMBL-Plants: tr|G7JRA5|G7JRA5_MEDTR SOUL heme-binding family protein; Found in the gene: LotjaGi3g1v0217700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:32821815..32823341) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAGGTGGTGGAAAAATGGAGTCCACAAATGCATGGTACCGTGGCAGAATAACCACCATTGATTTCCTATGCAAAACT CCAATTTTCTAATCCCCTTCTCCAAGAAAACACAGAGACACATGACATCACTGTCCAAAGGATAATCATCACAATCAATA ACGAAATCACCTCCATCATCACTCCCATGACTCTATATATTCGATCGAATCCCTTATCACAACACTATCCAAATCGCACA ATCTTCTTATCTCTGCAATCTCACCTTACCTTCTTTCATTCTCGATCAATCATGGGCATGGTGTTCGGCAAAATCGCTGT CGAAACCCCGAAATACGAGGTGACAAAATCCACACCCGACTACGAAATCCGCAACTACCCACCGGCTGTGGCGGCGGAAG TCACCTATGATCCGTCGCAATTCAAGGGAAACAGAGACGGTGGGTTTATGGTGCTGGCGAATTACATTGGAGCTTTGGGC AACCCCCAGAATGCAAAACCAGAGAAGATTGCAATGACAGCACCGGTTATCACAAAGGATGGTGGTGGTGGTGAGAAGAT TGCAATGACAGCTCCAGTTGTGACCAAGGAAGGTGGTGGTGGTGGTGGTGGTGGTGATGGTGGTGAAGGGGTGAAGAAGA TGGTGACTATGCAGTTTATTTTGCCATCTTGTTATGAGAAAGCAGAGGAGGCGCCTAAGCCTACTGATGAGAGGGTTGTG ATTAGAGAGGAAGGTGAGAGGAAATTTGGGGTGGTGAAATTTGGTGGGGTGGCGAGTGAGGAGGTGGTGAAGGAGAAGGT GAAGAAGCTGAGGGGGTGTTTGGAGAGAGATGGGTTTAAGGTGGTTGGGGAGTTTTTGTTGGCTAGGTATAATCCACCAT GGACAATTCCAATGTTCAGGACTAATGAAGTTATGATCCCAGTTGCATGAGCATGGTTGATGTTGATGATGATATATGGA TTTCAGTACTTTCTGTTTGTTAAGGGTTTGTGTTAGTGTTATGAATTTTGGATGTGTTGTTGTAGTGATGTTCACTGTTG TTTTGTTCAATTACACATGAAATAATGACAAATGAAGGTTTTGTGTACTGGTTTTTTTTTTCTTGGTTGCTTCTGTATTG TCCTGTTTCAGAACCTAGTTTGAAGTACTTACTAAGAAACATGTGCTTGGAGTTCAGGTTTATGAGGGGATGATAAAAAA TACAGGTTATGTGTCATGTTCTTTCACTTCATGATTGGAATTTCATTTACCTCAAGGCTAATAAACCAAGAGAAGATGCT AATACAAAGGGAGTTCAACTGATGATAATGCATATAAGAATGCAAGCTTATGAATTCTGCTCATTATACTTCTGAAATGA TTTTTACCGGATAGTCAACAATTATTCACTGAGCATAAACTCACATTTACACAACAAAATAAAGATCTCCAGTGTCATTC TATTCAATAATTCAAGTTATCCAACTACTAGTTTCACTATAATAGTGATAATATTGAGAAGAATAAGGGGAAGTCTTAAA CATTGAC
CDS sequence (LotjaGi3g1v0217700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCTATATATTCGATCGAATCCCTTATCACAACACTATCCAAATCGCACAATCTTCTTATCTCTGCAATCTCACCT TACCTTCTTTCATTCTCGATCAATCATGGGCATGGTGTTCGGCAAAATCGCTGTCGAAACCCCGAAATACGAGGTGACAA AATCCACACCCGACTACGAAATCCGCAACTACCCACCGGCTGTGGCGGCGGAAGTCACCTATGATCCGTCGCAATTCAAG GGAAACAGAGACGGTGGGTTTATGGTGCTGGCGAATTACATTGGAGCTTTGGGCAACCCCCAGAATGCAAAACCAGAGAA GATTGCAATGACAGCACCGGTTATCACAAAGGATGGTGGTGGTGGTGAGAAGATTGCAATGACAGCTCCAGTTGTGACCA AGGAAGGTGGTGGTGGTGGTGGTGGTGGTGATGGTGGTGAAGGGGTGAAGAAGATGGTGACTATGCAGTTTATTTTGCCA TCTTGTTATGAGAAAGCAGAGGAGGCGCCTAAGCCTACTGATGAGAGGGTTGTGATTAGAGAGGAAGGTGAGAGGAAATT TGGGGTGGTGAAATTTGGTGGGGTGGCGAGTGAGGAGGTGGTGAAGGAGAAGGTGAAGAAGCTGAGGGGGTGTTTGGAGA GAGATGGGTTTAAGGTGGTTGGGGAGTTTTTGTTGGCTAGGTATAATCCACCATGGACAATTCCAATGTTCAGGACTAAT GAAGTTATGATCCCAGTTGCATGA
Protein sequence (LotjaGi3g1v0217700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLYIRSNPLSQHYPNRTIFLSLQSHLTFFHSRSIMGMVFGKIAVETPKYEVTKSTPDYEIRNYPPAVAAEVTYDPSQFK GNRDGGFMVLANYIGALGNPQNAKPEKIAMTAPVITKDGGGGEKIAMTAPVVTKEGGGGGGGGDGGEGVKKMVTMQFILP SCYEKAEEAPKPTDERVVIREEGERKFGVVKFGGVASEEVVKEKVKKLRGCLERDGFKVVGEFLLARYNPPWTIPMFRTN EVMIPVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 34 | 246 | 213 | 8.4E-82 | – | |
| PANTHER | 34 | 246 | 213 | 8.4E-82 | ||
| SUPERFAMILY | 36 | 116 | 81 | 2.35E-18 | ||
| Gene3D | 44 | 119 | 76 | 1.2E-18 | ||
| Pfam | 45 | 116 | 72 | 3.2E-19 | ||
| SUPERFAMILY | 116 | 246 | 131 | 2.93E-31 | ||
| Gene3D | 120 | 247 | 128 | 4.4E-31 | ||
| Pfam | 122 | 245 | 124 | 2.7E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0217700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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