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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0222500 |
| Transcript ID | LotjaGi3g1v0222500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT3G09280.1 transmembrane protein; Swiss-Prot: sp|Q725C6|AGUA1_LISMF Putative agmatine deiminase 1; TrEMBL-Plants: tr|A0A1J7GK07|A0A1J7GK07_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0222500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:33742196..33744510) extracted from Lotus japonicus Gifu genome v1.2.
TTTAATTTTAATTTTCTTTTAACTTTCCATCTTCCTCAATCCTCTTCTTCATACTTCCAGAAACCTTCAAAACCTTCAAC TTCTTTTGCTCCTCTCTCCACCGCACCACCACCAGCCCCCACCCCGAAACCTTCACACCCCATCGCACCACCACCAGCCA CCATCGAAACCTTCAACCTTCAACTTCTTCTTGTTCTCCCTCTTCTCCCAGCAACCCGCATCAGAACTTGGTTCTCCTTC TTCTCCCAGCAATCGGAGCCTCAAAACCCATAACCCCAACCCATCGAAACCCACACCCCAAAACCCATAACTTGTCCCAC AGAACCTGTTAGAGTTAACATGGAAGAACGCGAGATCTGAGAGCAAGCCAAGCTCGTTGGCAATGTCATCGTGGTTGAGG TCGTTTTCAGCGACTATGCAGATCTTGCGGTGGTCGACGAAGAGAAGAGGGTGATGGTGATGAGTTTTGAGAAAATGGGT TTGTGGGTGGAGAAGAGAAGAGGCAGATATGTTGGTGGAGAAGAGAAAATGATTTTTAACGGATTGATTCCTGGGATAAC TACTGCTCCCACTTCCAGGTCGTCCTCCACGGCGTCGTTAACATGCAGCTTCCGAATTAGTGGCTTTGGGATATGGTGGA TGAGTTCGTTTACCAGTTTCAGAGCTTCTGTCAGTACTGTGCCAAGATGAAGAAGGAGGAAAGGTTTCTTCTGGGTTTTT TATGATGTTTTTCTGGGTTTTTGTAAATCATTAACACACTTGGCATAAAATAAAATAAAAGAATCCACGTGGAAATTGTG ATTGTGTAAAAAATGAGCCACATAAGCATGAAACACGGGTAGGGACTTATTTCGATTAAAAAAAATTCCAAGGATCCGGA ATCGGAATTTTTTTTATGGACTTATTTTCATACGCCACACAATTTCAGGGACATCTAGAGTATTTAAGTCTTTTTAAAAA CTTTTTTTTTTCAACCACTGCAGATATCCTTTACCCAGACAATTTTATTCGAGTCGGGTATGACCATTGTGGGCGACAAA ATTCTCCAACCAAAATTTAATGCAGATACATTCACAAGAACTCTCAGACTTGAGGTCGAAACCTTTGGGTAAGCTAGAAC AACCTTGAATAAATTAATCTATGCGCTGCTTGATAGTATTTAAATAACAATTGAATATAAGTCATTTGTCAGAATCCAAC ACTAGGAAATTTCAGGAAAACCACACGATTGTAGGATCTCTATATATAATGTAGAGTAGAAGCTAACATTACCAACCCCA AAACCAATCTTCATCTAAAGCTTCAAGGATAGCATCTTCATATATCCTAAACAATGGCCCAGATTCTTTACCTGTGCTTT CTATTAGCAGTAGCAAATATTCTTCTGGGTCTAGCCATGGCTACAACAAACAAACCCCAAAACACCTTCCAATCTATTTC AGCACCATGTTCAAATGCTCCTTCTCAGAGTCCCTCTATTGGAAGGAAACTTGGTAGGCACCATAGTCCTACTCCTAGTC CCTCTATAGCTCCAAAGAGTGAAGAAAAGGGGCATTCTAGTTCTGAAGGAAGTATTACCAATTATCATCAGAGAGCTTCT GTTGAAGCAGGTGGTGAAGTTTTGGGTTCTAAGGGTCAAGTTCACTTGTTAAGTCACCACCACCACTCATTTGACAGGTC AATAGCAGGGGGAGGAGTTATTCTTGGAGGGCTTGCCACCACTTTCTTTGTGGCGGTTTTCTGCTATATCAGAGCTACCA GAAGGCATGAGTTTGAGACCAATTCCGAGTGCTCACATTAAAGCCTTTATTGGTTTCTTATACTCTTCTGTCTCACTTTC TCTTGTTGTACACATTGCTTAGTGTAAAGGAAATGAAATTAGTGAATAGATAACGTTTCAAGCTACAGTTGTTCAGATGA AAATAAGGAACATTTTTAACAATTATTTAGACACTCTTTGTAACTGTAATAGAAGTTGAACTTATTACCAATTTTTTCAA ATTTGGATTATAAGTAGTCAAAGAAATCATAAATTCACGCAATTGTATAAGATGAGTCATTCAATTAAGATCGGACAATT CAAATCTTAAGCTGATTTCCACCAACCAATCTTGATGAAGTATATAAGCCGACTCATCTTAAACTAACAATGCAAATTTC TTGCCAATATGAATGTAGGATCATCTTGACTACAATAATCAAAACAAGATGGCTGAATTTTATCAATACACGTTGGAGTT GTAATGGGGAATAGGTGGTAAAAGATGGCATTTCAAATATCTTAAGGAATAAAACTATTGTATCTGTGGCCAGGG
CDS sequence (LotjaGi3g1v0222500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCCAGATTCTTTACCTGTGCTTTCTATTAGCAGTAGCAAATATTCTTCTGGGTCTAGCCATGGCTACAACAAACAA ACCCCAAAACACCTTCCAATCTATTTCAGCACCATGTTCAAATGCTCCTTCTCAGAGTCCCTCTATTGGAAGGAAACTTG GTAGGCACCATAGTCCTACTCCTAGTCCCTCTATAGCTCCAAAGAGTGAAGAAAAGGGGCATTCTAGTTCTGAAGGAAGT ATTACCAATTATCATCAGAGAGCTTCTGTTGAAGCAGGTGGTGAAGTTTTGGGTTCTAAGGGTCAAGTTCACTTGTTAAG TCACCACCACCACTCATTTGACAGGTCAATAGCAGGGGGAGGAGTTATTCTTGGAGGGCTTGCCACCACTTTCTTTGTGG CGGTTTTCTGCTATATCAGAGCTACCAGAAGGCATGAGTTTGAGACCAATTCCGAGTGCTCACATTAA
Protein sequence (LotjaGi3g1v0222500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQILYLCFLLAVANILLGLAMATTNKPQNTFQSISAPCSNAPSQSPSIGRKLGRHHSPTPSPSIAPKSEEKGHSSSEGS ITNYHQRASVEAGGEVLGSKGQVHLLSHHHHSFDRSIAGGGVILGGLATTFFVAVFCYIRATRRHEFETNSECSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 152 | 152 | 2.9E-41 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 152 | 152 | 2.9E-41 | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 116 | 93 | - | – | |
| MobiDBLite | 34 | 80 | 47 | - | – | |
| MobiDBLite | 34 | 48 | 15 | - | – | |
| TMHMM | 117 | 139 | 23 | - | – | |
| Phobius | 117 | 139 | 23 | - | – | |
| Phobius | 140 | 155 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0222500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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