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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0225300 |
| Transcript ID | LotjaGi3g1v0225300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT3G09030.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q9S7R7|Y3903_ARATH BTB/POZ domain-containing protein At3g09030; TrEMBL-Plants: tr|Q2HUH9|Q2HUH9_MEDTR BTB/POZ domain plant protein; Found in the gene: LotjaGi3g1v0225300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:34642692..34644846) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAGTCAGCAAACAAAAAATGAACAAAAGGGTGAGAGCAAGTCCAAGATAAGCAAGCAACTTTGACACTATTCCATTA ATGGAGGAAGAAGGCACTTCCAACGCCACCGCAGAGCCCCACACGCACGCCACAAACGACCGCATCAAGCTCAACGTCGG CGGAAAGCTCTTCGAGACCACACTCTCAACCATCCGGTCCGGCGGTCCAGACTCCCTCCTCTTCGCTCTCTCGAACCGCG ACTCGACCGATCCAAACCCGGTTTTCATAGACCGGGACCCGGAAATCTTCTCCGTCTTCCTCTCTCTCCTCCGCACCAAC CACCTACCCTCCACCGCCAGCCGCTTCTCCAAGCAAGAACTCGCCGACGAAGCCCAATTCTACGGCATCGACTCCCACCT CCGCAACGCCACCTCCCCGCCGCCGTTCTCCGGCTTCGACGCCTCTATTGTTGGCTCCATCCGCCCCGCCTCGGAGGGCC TCGTTTCTGCTTTCTCCGCCGCTGACAACGGCTCGGTTTGGATCGCCCACGGCGGTCAACTCTCGAGCTACGACTGGAAC CTTATCCACTCCGCCACGATCCGTACTCACCTTGATGAGATTGATTCGATCTGCCATGTATGGCCGGAGATTGCCGCCGT CGGGTCGGTTTCCGACGCTGGGCTCCACTTCTACAACTTCTCCGGCAGCCGTCATGAAGGATCCGTCCACTGGAGCGACC CGGGGGATCCTCGGATCTTCAAGGCGCGGGTCAATGCGGTAACCGCCTCGGATGATTCGGTTTTCGCCGCGTTCGATTGC ACTCACAGGGAGAACTGCATCCTCGAGGTTGATAAGGCGAAGCTCCAGATTGTGTCACAGTTAGGTCGGCAATCGGGGAA CCAGGCGAAGCATATGGTTCCTGGGAAGCTGACGTGGGTTCCGGCGACCGGAGTACTCGTTGGAAGCGCGGTCACTGGTG GTGCGTTCGGTTACTCGGGCTACATCCGGGTGTGGGACCCTAGGTCTGGGGAGGTGGTTTGGGAGACGAGCGAGCCCGGT TCGGGCCGGAGCAGTAGGTTCGGGGATTCGTTTGCCGCGGTTGGGGTTGATGTGGAAGGGTTGTTGTTGTTTAAGGTGTG TTCTAAGTCGGGGGATGTGGCTATGGCGGATATGCGGCTATTGGGGGATGATCCTTGGGTTTATTTGAATGAGAAAAACC CTAGCTTGGTGGCTAGTGGTGTTGATGGAAGCAGTAATGTGCTGCATTGTTATAAGGGGCAAGTGTTTGTGGGAAGGGGT GGAGAGTTGGAGGTTTGGTCGAGGTTGAGAGAGGCGGGTAGTGAAAATGCTGAGGGGTTTTATAGGAGGAATTTTGTGGA TAAGAGAGGGGATTCAGAGAGAGGGGTTATCAAGAAGATTGAAGGTGGTGGAGATAGGTTGTTTGTTAGCAGGGAAGGTG TTGAAGGTATTGAAGTGTGGGAGAGCTCCCATTCTGTTAAATCCATTTCTGTTTTGTGACCAGGGAACATAAGTTGTTAG GTAGGGTTCCCTCATTGTAAGATTCTTCTTCCATGAAAAGTTGGTTGAAGCTCTGATTTCTTTGTCAGCAATACATTGAA TAGCCATAATTTGATGCAACTTTTGTCTCTTTGGTTTGTTTTGTTTCCTGTTGTTTCCTGCATGTTGTACTCAAAGTTCT AAAAGATCAAGAATAAACTACAATGGGTTAGCAGAAGATGATCTTGATACTCATTATTACATTGAGTAGTATGACACACC CATTGTGGGGTGGATACATTATTAATCCAAACTATTCTGTATCTGTCATACTGAAATTTCTTCTTCTCTTCTATTGTAGT CCTGTATATTTCATAAGTGAAGTTTGATTTATGAATGGTGATGAAGCCCTTAAAAGTTGGAAGCTTACTTCAAATACCAT TGCAAGTTAGGCTTCTAAAAATTATTATCAACATATAAGGAAATGTTAGTAGTATGTTTTGGTTACTCAATTCTTGTGAT AATATTGAGCTTTATCATTTTCTTGCAACATTTTATTAACAATTTTGTCTTAATTAATTACCATTGTTCTATTCTTAAAT CCCACTCTGCAAGAGTAAGCCCTTCAATCCTCACTCACCTACTCTCCCACCAAAACAAGCAAAGTGGTGTAGTGG
CDS sequence (LotjaGi3g1v0225300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGAAGGCACTTCCAACGCCACCGCAGAGCCCCACACGCACGCCACAAACGACCGCATCAAGCTCAACGTCGG CGGAAAGCTCTTCGAGACCACACTCTCAACCATCCGGTCCGGCGGTCCAGACTCCCTCCTCTTCGCTCTCTCGAACCGCG ACTCGACCGATCCAAACCCGGTTTTCATAGACCGGGACCCGGAAATCTTCTCCGTCTTCCTCTCTCTCCTCCGCACCAAC CACCTACCCTCCACCGCCAGCCGCTTCTCCAAGCAAGAACTCGCCGACGAAGCCCAATTCTACGGCATCGACTCCCACCT CCGCAACGCCACCTCCCCGCCGCCGTTCTCCGGCTTCGACGCCTCTATTGTTGGCTCCATCCGCCCCGCCTCGGAGGGCC TCGTTTCTGCTTTCTCCGCCGCTGACAACGGCTCGGTTTGGATCGCCCACGGCGGTCAACTCTCGAGCTACGACTGGAAC CTTATCCACTCCGCCACGATCCGTACTCACCTTGATGAGATTGATTCGATCTGCCATGTATGGCCGGAGATTGCCGCCGT CGGGTCGGTTTCCGACGCTGGGCTCCACTTCTACAACTTCTCCGGCAGCCGTCATGAAGGATCCGTCCACTGGAGCGACC CGGGGGATCCTCGGATCTTCAAGGCGCGGGTCAATGCGGTAACCGCCTCGGATGATTCGGTTTTCGCCGCGTTCGATTGC ACTCACAGGGAGAACTGCATCCTCGAGGTTGATAAGGCGAAGCTCCAGATTGTGTCACAGTTAGGTCGGCAATCGGGGAA CCAGGCGAAGCATATGGTTCCTGGGAAGCTGACGTGGGTTCCGGCGACCGGAGTACTCGTTGGAAGCGCGGTCACTGGTG GTGCGTTCGGTTACTCGGGCTACATCCGGGTGTGGGACCCTAGGTCTGGGGAGGTGGTTTGGGAGACGAGCGAGCCCGGT TCGGGCCGGAGCAGTAGGTTCGGGGATTCGTTTGCCGCGGTTGGGGTTGATGTGGAAGGGTTGTTGTTGTTTAAGGTGTG TTCTAAGTCGGGGGATGTGGCTATGGCGGATATGCGGCTATTGGGGGATGATCCTTGGGTTTATTTGAATGAGAAAAACC CTAGCTTGGTGGCTAGTGGTGTTGATGGAAGCAGTAATGTGCTGCATTGTTATAAGGGGCAAGTGTTTGTGGGAAGGGGT GGAGAGTTGGAGGTTTGGTCGAGGTTGAGAGAGGCGGGTAGTGAAAATGCTGAGGGGTTTTATAGGAGGAATTTTGTGGA TAAGAGAGGGGATTCAGAGAGAGGGGTTATCAAGAAGATTGAAGGTGGTGGAGATAGGTTGTTTGTTAGCAGGGAAGGTG TTGAAGGTATTGAAGTGTGGGAGAGCTCCCATTCTGTTAAATCCATTTCTGTTTTGTGA
Protein sequence (LotjaGi3g1v0225300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEEGTSNATAEPHTHATNDRIKLNVGGKLFETTLSTIRSGGPDSLLFALSNRDSTDPNPVFIDRDPEIFSVFLSLLRTN HLPSTASRFSKQELADEAQFYGIDSHLRNATSPPPFSGFDASIVGSIRPASEGLVSAFSAADNGSVWIAHGGQLSSYDWN LIHSATIRTHLDEIDSICHVWPEIAAVGSVSDAGLHFYNFSGSRHEGSVHWSDPGDPRIFKARVNAVTASDDSVFAAFDC THRENCILEVDKAKLQIVSQLGRQSGNQAKHMVPGKLTWVPATGVLVGSAVTGGAFGYSGYIRVWDPRSGEVVWETSEPG SGRSSRFGDSFAAVGVDVEGLLLFKVCSKSGDVAMADMRLLGDDPWVYLNEKNPSLVASGVDGSSNVLHCYKGQVFVGRG GELEVWSRLREAGSENAEGFYRRNFVDKRGDSERGVIKKIEGGGDRLFVSREGVEGIEVWESSHSVKSISVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 11 | 463 | 453 | 9.8E-157 | – | |
| PANTHER | 11 | 463 | 453 | 9.8E-157 | – | |
| Gene3D | 14 | 112 | 99 | 4.0E-20 | – | |
| SUPERFAMILY | 19 | 108 | 90 | 9.87E-17 | ||
| CDD | 22 | 101 | 80 | 6.328E-22 | – | |
| Pfam | 22 | 106 | 85 | 1.2E-12 | ||
| SUPERFAMILY | 132 | 331 | 200 | 1.02E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein homooligomerization | The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer. |
Expression pattern of LotjaGi3g1v0225300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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