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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0225900 |
| Transcript ID | LotjaGi3g1v0225900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Scarecrow transcription factor family protein; TAIR: AT2G37650.1 GRAS family transcription factor; Swiss-Prot: sp|O80933|SCL9_ARATH Scarecrow-like protein 9; TrEMBL-Plants: tr|I1JLK0|I1JLK0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0225900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:34810838..34814158) extracted from Lotus japonicus Gifu genome v1.2.
AGCATAAGCATCACATATCACAAGCTCTCATCTCAGCACTCTCTTATTCTTCTCTTTGGTGGTGAGGCTTAACTAGGTAA CCATTTTTTCTTCTCAGCTTGTTCATTTTCCTTCAGCTACTTGGTGTGTGGGGCTTCATTTACTTCATTATTTAGCTTCA CTTTCTCTCAAGACAACCTTTTTATATATATATATATATATTTTAATGATATTCATGTTGAAAGTTGAGTTCTTGTCCCT CATTTGTTGATGATTCTTTTGTTTGTTAGATGATTTTAGTTATATTCAACTCTTAAAGCTAGTATATTATTATTTTTTTC TTTTCTTTTTCTATGCATAGCTTTGGTTTTTTAATTTCTACACCCATGTTTCAGGGTTAGAGGTTTGATGAGTGTATTTT AATGGTTTCTGAAGGGTCTCTGTTTGTGAAATGTTCTGAAAGAAAGACCAGTTTTCAGGAGAGGATGATTTGTTTTTGAA GATTGATTTGGACTCAGGTTTGAATTTTTAGTTGACAATGAATCCATACCTGCTGGGTAGGTTGAGGAATCAATCTTTTC CAGTTCTGCAGAATCAGGGTTTTTCTGCTGGACCCAGATTTGAAAATCACTCCTTTGAACAAACTAGAGAATTTGATTAT CTCCAGTCTGATCCAGTGCCTGCTAATACACCTTCATCCTCTACTGTTACCCATGAGGAGCCTTCTCCAGAGGATTGTGA GTTTTCTGATGCAGTTTTGAGCTATATCAACCAGATCCTTATGGAAGAAGACATGGAAGACAAGACATGTATGCTTCAAG ATTCTTTAGATCTTCAGGCAGCTGAGAAATCGTTATACGAGGCGCTGGGTGAAAAGTATCCACCCTCACCAATACAAAAT CCAAGTTTTGTCAATCAAAATGTAGAGGTTGGAGGTAATCACTTTTCTAGAAATTATGGCAATTTTCCTGGTACCAGTGG TGATCTCAGCAGCATTTTTATCAATCAAAATGATGGGGTTGGAGGTAATCACTTTTCGAGAAGCAATGGTAATTTATCAC TCCCAAGCTCAATTGACTTCCCTCCAGAAAGTCTTCAAAGTAATAGTATTTTACAATCAACTTATAGCCCTTCCAATAGT GTAATAAGTAGTGTTGAAGGGCCTGTACACTCTCCAAACAGTATTCTTCAGGTGCCTGATCTGAGAAGTGAGAGTCAATC CATTTCTCAATTTCAGAAGGGTGTTGAGGAGGCTAGTAAGTTTCTTCCAAGTGGAAATGAGTTCTTTTCTAATTTGTCAC CACTAAATCCGAAAGTAGAAAAAGATGAATTGTCAGTTAAGGCGGAGAAGGATGAGAATGATCGCGTTCTCAGTGAATCC ACGGCGGTAAGGAAGCATCCTCATAGGGAAGAGGGGGATGATGAAGAAAATAGAAGCAGCAAGCAAGCAGCTATTTATTC TGAACCAACATTGCGCTCAAGTATGTTTGATATATTTTTGCTTCATAGCACAGGGGATGGTAAGGATCATTATGTGGCTC GCCGTGAAGCTTTGCAGATTAAGACAGAGAAGACAGTGTTGCCAGGTAGTCAATCAAAAGGCTCCAATAGCAGGAAGGGA CGTGGGAAGAAACAAAAGGGAAAAAAAGAAGTGATTGATTTGAGAACACTTCTGGTCCTTTGTGCCCAAGCTGTTGCTGC AGATGACCATAGGAATGCGCAGGAGTTGCTAAAGCAGATCAGGCAACACTCAAATCGTTTCGGGGATGGAAATCAGAGGC TTGCTCATATCTTTGCAGACGGTCTTGAGGCACGTTTGGCTGGTACTGGAAGCCAAATCTATAAAGGACTTGTTAGTAAG AGAACATCATCTGCTGATATTCTAAAAGCTTATCATCTATTCCTCGCTGCATGCCCTTTTAGGAAAATTTCTAATTTTAT GTCAAATATCACAATAAGGACATCTTCAGAAAATTCAATGAGGGTCCATGTTATAGATTTTGGTATCCTTTATGGTTTTC AGTGGCCCACTTTTATACAGCGCCTATCATGGAGAACAGGAGGACCACCAAAGCTTAGGATTACAGGAGTAGATTTCCCA CAACCTGGTTTCAGGCCTGCAGAGAGAATTAAAGAAACAGGACGCCGCTTGGCGGCTTATGCTGAAGCCTTTAATGTTCC ATTTGAGTTCAATGCCATAGCAACAAAATGGGAAACAATTCAACTAGAAGATCTCAAGATTGATAGGGATGAGTTCCTTG TTGTCACATGTTTCTATAGAGGTAAGAACTTGCTGGATGAATCTGTGGTAGTGGACAGTCCAAGGAATAATTTCCTCAGT TTGATTAGGAAGATCAACCCAAATTTATTCATTCATGGCATTACCAATGGGGCATTTAATGCCCCGTTCTTTGTCACCCG GTTCCGGGAGGCACTGTTTCACTACTCAGCACTGTTTGATATGCTTGAAACTATTGTGCCTCGAGAGGACTGGGAAAGGA TGCTGATTGAGAAAGAGATATTTGGGAGGGAAGCGTTGAATGTTATAGCTTGTGAAGGGTGTGAAAGAGTAGAGAGGCCC GAGACATATAAGCAGTGGCAAGCGCGGATTCTGAGGGCTGGGTTTTCACAACAACGTTTTGATCGTGAGACTATTAAGAT GGCAATAGAGAAAGTCAGGTCTGGCTACCACAAGGATTTTGTGATTGATGAAGATAGCCAGTGGTTGTTGCAAGGTTGGA AGGGGCGTATCATTTATGCCCTTTCTTGCTGGACACCTGCATAACTAACGTGAATCACTTCTCCTACCACAAAAGCTACT AGGAGTAGCTTCTTCCAGAACCAATTCCCTCTACCGTGCATCCAAACATGGACTAAGATAGTACACAATATAAAGGGCAT CTAACTAGGACCTTGTGGATTAGTTTGACTGCTGAGGAACTCAGGTTCTTTAGTTACCCCATTTCTCAGTTTTATGTTGT AACTTGTAACCCTTTTGGCCTTTGTTGTTCAGTGCATATTGAACTAATTTATCTGCTAAAATTTGATAAATGAAGAGTGA ACTCTCAGCATATATGGTCAATTATCTTGAGCAAAGGTTCAAGCTTGATAGGTCAGTAAGGACAAACATGGTTATTGAAT AGCCTGTTTGGAAAGCAGATTATGTTGTAACTACTTGTCACTGCATGTACCATAGATCATAGTAGTTTGCATTTTGTAAT TTGAGGTTGTTACCTGAATGTAGTCAATTTTAATGATGCAGAATTGTAGATTACTTTGGCACGTAATAAGAATTATCCTT TGATTACTATTGCTGATTTTGATCTCTAGAGTATAGTCAAT
CDS sequence (LotjaGi3g1v0225900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCCATACCTGCTGGGTAGGTTGAGGAATCAATCTTTTCCAGTTCTGCAGAATCAGGGTTTTTCTGCTGGACCCAG ATTTGAAAATCACTCCTTTGAACAAACTAGAGAATTTGATTATCTCCAGTCTGATCCAGTGCCTGCTAATACACCTTCAT CCTCTACTGTTACCCATGAGGAGCCTTCTCCAGAGGATTGTGAGTTTTCTGATGCAGTTTTGAGCTATATCAACCAGATC CTTATGGAAGAAGACATGGAAGACAAGACATGTATGCTTCAAGATTCTTTAGATCTTCAGGCAGCTGAGAAATCGTTATA CGAGGCGCTGGGTGAAAAGTATCCACCCTCACCAATACAAAATCCAAGTTTTGTCAATCAAAATGTAGAGGTTGGAGGTA ATCACTTTTCTAGAAATTATGGCAATTTTCCTGGTACCAGTGGTGATCTCAGCAGCATTTTTATCAATCAAAATGATGGG GTTGGAGGTAATCACTTTTCGAGAAGCAATGGTAATTTATCACTCCCAAGCTCAATTGACTTCCCTCCAGAAAGTCTTCA AAGTAATAGTATTTTACAATCAACTTATAGCCCTTCCAATAGTGTAATAAGTAGTGTTGAAGGGCCTGTACACTCTCCAA ACAGTATTCTTCAGGTGCCTGATCTGAGAAGTGAGAGTCAATCCATTTCTCAATTTCAGAAGGGTGTTGAGGAGGCTAGT AAGTTTCTTCCAAGTGGAAATGAGTTCTTTTCTAATTTGTCACCACTAAATCCGAAAGTAGAAAAAGATGAATTGTCAGT TAAGGCGGAGAAGGATGAGAATGATCGCGTTCTCAGTGAATCCACGGCGGTAAGGAAGCATCCTCATAGGGAAGAGGGGG ATGATGAAGAAAATAGAAGCAGCAAGCAAGCAGCTATTTATTCTGAACCAACATTGCGCTCAAGTATGTTTGATATATTT TTGCTTCATAGCACAGGGGATGGTAAGGATCATTATGTGGCTCGCCGTGAAGCTTTGCAGATTAAGACAGAGAAGACAGT GTTGCCAGGTAGTCAATCAAAAGGCTCCAATAGCAGGAAGGGACGTGGGAAGAAACAAAAGGGAAAAAAAGAAGTGATTG ATTTGAGAACACTTCTGGTCCTTTGTGCCCAAGCTGTTGCTGCAGATGACCATAGGAATGCGCAGGAGTTGCTAAAGCAG ATCAGGCAACACTCAAATCGTTTCGGGGATGGAAATCAGAGGCTTGCTCATATCTTTGCAGACGGTCTTGAGGCACGTTT GGCTGGTACTGGAAGCCAAATCTATAAAGGACTTGTTAGTAAGAGAACATCATCTGCTGATATTCTAAAAGCTTATCATC TATTCCTCGCTGCATGCCCTTTTAGGAAAATTTCTAATTTTATGTCAAATATCACAATAAGGACATCTTCAGAAAATTCA ATGAGGGTCCATGTTATAGATTTTGGTATCCTTTATGGTTTTCAGTGGCCCACTTTTATACAGCGCCTATCATGGAGAAC AGGAGGACCACCAAAGCTTAGGATTACAGGAGTAGATTTCCCACAACCTGGTTTCAGGCCTGCAGAGAGAATTAAAGAAA CAGGACGCCGCTTGGCGGCTTATGCTGAAGCCTTTAATGTTCCATTTGAGTTCAATGCCATAGCAACAAAATGGGAAACA ATTCAACTAGAAGATCTCAAGATTGATAGGGATGAGTTCCTTGTTGTCACATGTTTCTATAGAGGTAAGAACTTGCTGGA TGAATCTGTGGTAGTGGACAGTCCAAGGAATAATTTCCTCAGTTTGATTAGGAAGATCAACCCAAATTTATTCATTCATG GCATTACCAATGGGGCATTTAATGCCCCGTTCTTTGTCACCCGGTTCCGGGAGGCACTGTTTCACTACTCAGCACTGTTT GATATGCTTGAAACTATTGTGCCTCGAGAGGACTGGGAAAGGATGCTGATTGAGAAAGAGATATTTGGGAGGGAAGCGTT GAATGTTATAGCTTGTGAAGGGTGTGAAAGAGTAGAGAGGCCCGAGACATATAAGCAGTGGCAAGCGCGGATTCTGAGGG CTGGGTTTTCACAACAACGTTTTGATCGTGAGACTATTAAGATGGCAATAGAGAAAGTCAGGTCTGGCTACCACAAGGAT TTTGTGATTGATGAAGATAGCCAGTGGTTGTTGCAAGGTTGGAAGGGGCGTATCATTTATGCCCTTTCTTGCTGGACACC TGCATAA
Protein sequence (LotjaGi3g1v0225900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPYLLGRLRNQSFPVLQNQGFSAGPRFENHSFEQTREFDYLQSDPVPANTPSSSTVTHEEPSPEDCEFSDAVLSYINQI LMEEDMEDKTCMLQDSLDLQAAEKSLYEALGEKYPPSPIQNPSFVNQNVEVGGNHFSRNYGNFPGTSGDLSSIFINQNDG VGGNHFSRSNGNLSLPSSIDFPPESLQSNSILQSTYSPSNSVISSVEGPVHSPNSILQVPDLRSESQSISQFQKGVEEAS KFLPSGNEFFSNLSPLNPKVEKDELSVKAEKDENDRVLSESTAVRKHPHREEGDDEENRSSKQAAIYSEPTLRSSMFDIF LLHSTGDGKDHYVARREALQIKTEKTVLPGSQSKGSNSRKGRGKKQKGKKEVIDLRTLLVLCAQAVAADDHRNAQELLKQ IRQHSNRFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVSKRTSSADILKAYHLFLAACPFRKISNFMSNITIRTSSENS MRVHVIDFGILYGFQWPTFIQRLSWRTGGPPKLRITGVDFPQPGFRPAERIKETGRRLAAYAEAFNVPFEFNAIATKWET IQLEDLKIDRDEFLVVTCFYRGKNLLDESVVVDSPRNNFLSLIRKINPNLFIHGITNGAFNAPFFVTRFREALFHYSALF DMLETIVPREDWERMLIEKEIFGREALNVIACEGCERVERPETYKQWQARILRAGFSQQRFDRETIKMAIEKVRSGYHKD FVIDEDSQWLLQGWKGRIIYALSCWTPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 747 | 730 | 1.6E-294 | – | |
| PANTHER | 18 | 747 | 730 | 1.6E-294 | – | |
| MobiDBLite | 44 | 66 | 23 | - | – | |
| MobiDBLite | 46 | 60 | 15 | - | – | |
| MobiDBLite | 266 | 302 | 37 | - | – | |
| MobiDBLite | 343 | 368 | 26 | - | – | |
| ProSiteProfiles | 366 | 746 | 381 | 86.518 | ||
| Pfam | 375 | 746 | 372 | 4.3E-114 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0225900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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