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LotjaGi3g1v0226900.5

Overview

Field Value
Gene ID LotjaGi3g1v0226900
Transcript ID LotjaGi3g1v0226900.5
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Isochorismate synthase; TAIR: AT1G18870.1 isochorismate synthase 2; Swiss-Prot: sp|Q9ZPC0|ICS_CATRO Isochorismate synthase, chloroplastic; TrEMBL-Plants: tr|G7JQL8|G7JQL8_MEDTR Isochorismate synthase; Found in the gene: LotjaGi3g1v0226900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:35116535..35121605) extracted from Lotus japonicus Gifu genome v1.2.

ATTGTGGGGGTCATATACGGATATTTAATCAGGGCTTACATGTCTCTTATATTTGCGTATGCTACTCGTGTTAAATGAGC TTGAAGTGTTTGCTCATGATAAGGCTGGGATACCGTGAGTGGTAGCTCGGTAGGCACAGAAGGATTTCCAAACATGCACA TATCTATCTTATGTTATGTCTCATTCTATTCTGTGTGACAATCTTATGTTTTTGTGTTTTTTGTTGTTCCGTTCAGAGAC CCGTGTGTCAGGGATGCTACCTTTCAATGAACGGTTGCGGAGAAGGAGAATACAATGCAAGAAACCCTGTTGGCACCATA GAAACCCGGACCTTGGCACCAGTTGCATCACTTGCAATGGCTATGTGCAGCCTCAAGATGGCAATTTCAGAGTTGAAAGC AGACCCTCCATTTTGTACCTCTTCTGGCATAGTGAGAGTGCAGGTTCCCATTGAGGAGCAGGTTGAAGCCATTGATTGGC TCCATTCTCAGAGCCACCTTCTCCTCCCTCGCTGCTTCTTTTCCGGCAGGGAACATAATCCCCGCCGTGGAAACTTGGTC AGTGTTGCTGGTGTGGGTTCAGCTGTTTTCTTTTCCCAGCCACATCCATTTTCCTATTGGGATTGGATATCTATAAGGAG GTAAGTGAGTCCTTGAAACTTTGATCTTTTAAGTTTGTTTTTAGAAATTTCTTTATGCCAACAAGTTAAGGCAATGTTTG GTTATCTGTTGGCACCAATGCAAACGGATGTTAATGCAAATGGATGTAAGCGAGATAAAAAGTTAACAGAACTTTTCTTA TGGATTGGAATTAAAGTTATTCATGTTTCCCTCAACTGGTATCCAAACTAATTAAAATATGAAGTCATTTCTAAATCACT CCAAGCAGCTACTACCAAGCAGAAATAACCCCTCCAAGATATATAGAACCTCAGAATCTGTTTATAATTTTCTTCGTGCT TTGATTTATATATTTTTATAAACTACTTTCTAGGTTTCTTTCTGAGAGATCCCCTTTAATCCGTGCATATGGGGCTATCC GTTTCAATGCGAAAGCTAAGATGTCATCAGAGTGGCTGGCTTTTGGCTCTTTCTACTTCATGATTCCGCAGGTGCATACA TTGTTTTTCTTTCCAAAAACTAATTTGCCATTGCATGCATGTGTTAGTATTTATAGCATCAGAAGCCAGAGATACCTAGC CAAAAAATTGACAGGTTGAGTTTAATGAGCTTGAAGGAGGTTCAATGCTTACAATAACTATTGCCTGGGACAATGCTCTT TCTTGGTCATGGGAAACTGCAATCAATGAACTCCGAGCCACAGTTTGCAAAGTGAGTGCAAAGAAACTATGCCTTTTAAA TTATAAAGCTAGAGATTTTGTAAAAGCCCTCCTTTGCTTCAGGTTTCTTCTTCCATTGTTAAGTCTCCAAAACAAGCTCC TCCAACATTAATATTAAGCAGCCATAACATTCCCAGCAAAGTAGATTGGGATCTTGCTGTTAACAGAGCTTTGCAGATGA TAGAGCAAGAAGATTCCTTGCTAACCAAGGTAACCTTTATCTCATGCTTGCTTGTTACTTTTGTCCAATTTTTTTCCTTT CCCTTTCTTTTCTCTGCTTTTGCATCAAAACTTGTGCTGCAAGAATCCATTTGAAAGTCCGTTTCTTTTGCCATAATGGA AATGTAGGTTGTGCTAGCTCGTAGCACCAGAGTTGTGCCTACTGCTGATATTGATCCTCTAATGTGGTTAGCTTGCTTAA AGGTGTTGTGCTTCTCTTTTCTCTTGTCACTTACAAATTGAATAGATTATCTTCATAATATGTAGTAGCATAATACTTAT GTCCCTATTGAAACTATTACAGGTTGAAGGTGGGAATGCTTATCAATTTTTCCTTCAGCCGCCTAATGCACCAGCATTTA TCGGAAACACAGTAAGTATGATGTCTGACTATAAACTAGGAAGGTTTATATAGTCTTTCCCTCATATCATTGTTTACGAT GTCATGATGTTTTGCTAAACGTTCTACAAAATATATAAATTTCACATAATAACTTCAGTTACTTTTTTATTATTATTAAA CTCATCTCAATAGCTTAATGTATACTTTAAAAGTCATTACGTGGATAACCTCTTTGAGAACTGTTTTTCTGAATTGAATC AGCAATGATAAATTTTTCTCCTGTGTTTCCATTTTAATTTTATGAACTTGATGAATAGCCAGAGCAACTATTTCACAGAA AACGGCTCCACATTACTAGCGAGGCTTTGGCTGGAACCCGTGCTAGAGGAGTATCTCTAGCACTAGACCGTCAAATTGAA CTTGATTTACTTACCAGGTTTACCTTGCTCCTTGGATCTTTGATGTTAACCTTTGTTATATATTTGCTTTCTTTTACGCT TGTGATTTCTTTGTTTACATTTGTTTCTAGCTTCTAAACTCTTGTTGTTTTGAGTTTTTTCACAGTCCAAAGGATGACAT TGAGTTTACGATAGTGAGAGATACCATAAGAAGAAAATTAGAGGTAAGCTTAGTTCTGTCATATTGATTGCTTATCTGTC ACAGAAGTTACTCTGGAATATATGCTTGATTTTGTTTCTAAATGAATTTGTCCTTGAATCCATTGATATTCATAGTCATA GGTCTAGAGAGCAAGAGATGAAGGAAAAAAAAAATATTTTAATAAAATGATCATTGCTTGTATGATGTGAACTTTAAAAA TCTGGTGTTGATATCTTTAGCCTCATGTTGCTGGTGTAAAAAATCTGAGAGTCAAAAGGATTTTATCTGTTTCTCTAACT AAAACCTTGAAGGTAAGTTGTCCTTGATACGACAATAAGGAAAAATAGATTAAAAGGCTGGACTGTATAATGCCACACTC AGTTTGCTGTTTCAATTTGCATATAACTATTGCATCTCCTTGGAGCCATTTAAGAACTTCCTTGGTTAAGTTGAGGATAA ACCATCTATCACAGGGATGTGTTTTGGCAGGCAGTATGCGAGAACGTTGCAATCAAGCCGAAGAAAATGATAAGGAAACT ACCCAGGATCCAACATTTATTTGCTCAACTAGTCGGCAAGTTAAGAAGTGAAGAAGATGAGGTAACTATAATATAGAGTG CAAATACTTGAGTTTCGTCAGGCATGCATTAAGTGGCTCTAACTTTGAATTCTTTACGGTTAATTTTAGTTTGAAATTTT GTCATCACTGCACCCAAGTCCAGCAGTTTGTGGGTTTCCAACAGAAGAGGCACAACTTTTAATTGCAGAAACAGGTACTT CTACTTTCAGTACACTATTGTTTCTAAAGCAGTCAAATCTTTCTGTTTTTCAAAGAACTTTTAGCTTAAGCAATATAAAT GGAATGATAGTCATATAGCATGCAATATTCTTTTACTCTATTTGTAGAAATTGAAATGGGAACATAGTTTGTACTAAGGC CTGAACTCCATGCAATAACTGCAAATCTAGGGGATTGGAATGTTATTGTGGCACAGTGTGATGATGATAACAGAGAAGAG TTAGTCATACAATATGCGATATATCACTGATTTAGCAAAATTCATGATTGTGATACTAGTTATGATTGGGAGTGTTACAA TATCAGCATCTACTTCGTTGCAAAGCTCTTCAAGTGTTGCTTTTATTTATCCAATTTTGGAATATTAATATGTAAAAGAA TCATTTTAGAACACACTGGGTAGTGAAAATAACTAAATTATTCTCATGATGTTTCAAATTTGGTTAACAAAGTTATGACT TCAATTCACTTGGATAAAATTTGGTTACTTTCAAACACAATTTTCAGAAGTATTTGATCGAGGGATGTACGCTGGACCTG TTGGTTGGTTTGGTGGAGGAGAGAGTGAGTTTGCTGTTGGCATCAGGTCAGCATTGGTGGAAAAGGTTAGCTACATAATT CAAGTTTGTTTTTTTTCTTGAATGACATATTTAGTTTGGGTTGGTTGGAATCTTAAGAAAATTTTAATGATAATCCAAAA TGGTTCTAATTTCTAGCATTCTACTAAATTAGGGAAGAAAAAACTGATAAATTTATTGTTAAGCTAGAGTAAGAGCACTT GATTTGGTTTAGAGTAATAAGCCCTGTTTGGAAGAGCTTATTTGAGCCTTTCTTATGGCATAAACACTTATGAAAGTGTT TGAGAGAGCTTATGTAAATAGCTTATGACCTACATATAAGCTGTTTTGAGCTTATTTTCATAAGCTATTCAGATTAGCTT ATGAATAAGAGCTTGTGCTTATCCATAACCTATTTTTCAGCTTATTCAATAAGTTTCTCAAATTAGCTTATGAATAAGTG CTTATGTGATAAACACTTATTTCCTTAAGTGTTAAATTGTTCTCTTTACCCAAACGCACCCTAAGTATCATTTGCATGTC ATGTTCTAAGCAGATTTCTCCCTAAGTTTGAGGAGCAGTTTGTATAGTTGAAGACAGTTTTTCCTTTTGTCCGTCTTGTA AAATTGGGAAAAATAGACTCTGAAAAATTCCCATGAATTTCAGAAATCTCATAGCTACACACACATTTGAATGTTTAAAA GTAGCCACATAGAAGCTTAGTCAACCAACAAGGTGCTGGTCTAGTAGTAAGCAAGCTAGACGTTGTAAGGATGAGAGGAT AAGTTCAAATCCTGGGAAAGACATTTGTTGGGATGGACATGCAACCGTTTCCCGAACGGGTGGCGACATTTGTCAAAGAT AAAAAAAATAAAAAATAGAAGCTTAGTCAAGTGTTTTTTCCACTAATTATAACATTTGCAAGTTTTTGTTATAGGATCTA GGTGCACTGATATATGCTGGAACAGGGATAGTGGAAGGAAGCAAACCTTACCTGGAGTGGGATGAGCTAGAGCTCAAAAC ATCTCAGGTATATTTGAACATGCCATCTTGTGCAAAACAATTCTAAACAGTTTGTTGCTTGACATGATTTATGAGCATCA TTTATCTGATCTTGTAGCTCATGGATACTAAGTGGATGTTGATTTGTTTTGTAGTTTACCAAGTTGCTCAAACTTGACTT GCCTCTGAGACAAAAAGTAGATGTAAAATGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0226900.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACGGTTGCGGAGAAGGAGAATACAATGCAAGAAACCCTGTTGGCACCATAGAAACCCGGACCTTGGCACCAGTTGC ATCACTTGCAATGGCTATGTGCAGCCTCAAGATGGCAATTTCAGAGTTGAAAGCAGACCCTCCATTTTGTACCTCTTCTG GCATAGTGAGAGTGCAGGTTCCCATTGAGGAGCAGGTTGAAGCCATTGATTGGCTCCATTCTCAGAGCCACCTTCTCCTC CCTCGCTGCTTCTTTTCCGGCAGGGAACATAATCCCCGCCGTGGAAACTTGGTCAGTGTTGCTGGTGTGGGTTCAGCTGT TTTCTTTTCCCAGCCACATCCATTTTCCTATTGGGATTGGATATCTATAAGGAGGTTTCTTTCTGAGAGATCCCCTTTAA TCCGTGCATATGGGGCTATCCGTTTCAATGCGAAAGCTAAGATGTCATCAGAGTGGCTGGCTTTTGGCTCTTTCTACTTC ATGATTCCGCAGGTTGAGTTTAATGAGCTTGAAGGAGGTTCAATGCTTACAATAACTATTGCCTGGGACAATGCTCTTTC TTGGTCATGGGAAACTGCAATCAATGAACTCCGAGCCACAGTTTGCAAAGTTTCTTCTTCCATTGTTAAGTCTCCAAAAC AAGCTCCTCCAACATTAATATTAAGCAGCCATAACATTCCCAGCAAAGTAGATTGGGATCTTGCTGTTAACAGAGCTTTG CAGATGATAGAGCAAGAAGATTCCTTGCTAACCAAGGTTGTGCTAGCTCGTAGCACCAGAGTTGTGCCTACTGCTGATAT TGATCCTCTAATGTGGTTAGCTTGCTTAAAGGTTGAAGGTGGGAATGCTTATCAATTTTTCCTTCAGCCGCCTAATGCAC CAGCATTTATCGGAAACACACCAGAGCAACTATTTCACAGAAAACGGCTCCACATTACTAGCGAGGCTTTGGCTGGAACC CGTGCTAGAGGAGTATCTCTAGCACTAGACCGTCAAATTGAACTTGATTTACTTACCAGTCCAAAGGATGACATTGAGTT TACGATAGTGAGAGATACCATAAGAAGAAAATTAGAGGCAGTATGCGAGAACGTTGCAATCAAGCCGAAGAAAATGATAA GGAAACTACCCAGGATCCAACATTTATTTGCTCAACTAGTCGGCAAGTTAAGAAGTGAAGAAGATGAGTTTGAAATTTTG TCATCACTGCACCCAAGTCCAGCAGTTTGTGGGTTTCCAACAGAAGAGGCACAACTTTTAATTGCAGAAACAGAAGTATT TGATCGAGGGATGTACGCTGGACCTGTTGGTTGGTTTGGTGGAGGAGAGAGTGAGTTTGCTGTTGGCATCAGGTCAGCAT TGGTGGAAAAGGATCTAGGTGCACTGATATATGCTGGAACAGGGATAGTGGAAGGAAGCAAACCTTACCTGGAGTGGGAT GAGCTAGAGCTCAAAACATCTCAGTTTACCAAGTTGCTCAAACTTGACTTGCCTCTGAGACAAAAAGTAGATGTAAAATG A
Download CDS Sequence

Protein sequence (LotjaGi3g1v0226900.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNGCGEGEYNARNPVGTIETRTLAPVASLAMAMCSLKMAISELKADPPFCTSSGIVRVQVPIEEQVEAIDWLHSQSHLLL PRCFFSGREHNPRRGNLVSVAGVGSAVFFSQPHPFSYWDWISIRRFLSERSPLIRAYGAIRFNAKAKMSSEWLAFGSFYF MIPQVEFNELEGGSMLTITIAWDNALSWSWETAINELRATVCKVSSSIVKSPKQAPPTLILSSHNIPSKVDWDLAVNRAL QMIEQEDSLLTKVVLARSTRVVPTADIDPLMWLACLKVEGGNAYQFFLQPPNAPAFIGNTPEQLFHRKRLHITSEALAGT RARGVSLALDRQIELDLLTSPKDDIEFTIVRDTIRRKLEAVCENVAIKPKKMIRKLPRIQHLFAQLVGKLRSEEDEFEIL SSLHPSPAVCGFPTEEAQLLIAETEVFDRGMYAGPVGWFGGGESEFAVGIRSALVEKDLGALIYAGTGIVEGSKPYLEWD ELELKTSQFTKLLKLDLPLRQKVDVK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR47253:SF4
1 504 504 4.3E-266 –
PANTHER
PTHR47253
1 504 504 4.3E-266 –
Gene3D
G3DSA:3.60.120.10
31 496 466 3.7E-99
IPR005801
SUPERFAMILY
SSF56322
65 497 433 6.15E-81
IPR005801
TIGRFAM
TIGR00543
135 492 358 3.8E-100
IPR004561
Pfam
PF00425
230 485 256 4.5E-56
IPR015890

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008909
Molecular function Isochorismate synthase activity Catalysis of the reaction: chorismate = isochorismate.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0226900.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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