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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0227600 |
| Transcript ID | LotjaGi3g1v0227600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT4G23980.1 auxin response factor 9; Swiss-Prot: sp|Q9XED8|ARFI_ARATH Auxin response factor 9; TrEMBL-Plants: tr|I1JM14|I1JM14_SOYBN Auxin response factor; Found in the gene: LotjaGi3g1v0227600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:35454185..35459299) extracted from Lotus japonicus Gifu genome v1.2.
GAGGACATGTTGTCCCTAACCATGTCCTGACCCTTGGTAATAAAGATTATTTTTTTATTATAGAAAAGCAATTTGTTTAA ATAAATGAAAGGACTCGATCCAAGGGGAGAGAGTGGGTGTTGATATGTGTGTTGGTTTGTTTGTGTGGCGTGGTCATTAC TCATTACTCATTCATAACCCTTTCATTCCAACACCTTGTAACGCCGTTTCCTTTCTTCCCATTTTTCTTACAACAACAAC AACAACTCAACAGACAGAGACAGCGCGTCCTCGTCGTTGCTGCTCAAGAAACTGCTTCCCAATTCTGTAACCGTTTCCTC AGAGACCATAATTGCTTTTCGCTTCCTCACACTTTTCACACTGTCTCTTCATCTTCAACTGGATCTCGTGATAACAGTTC AGAGATTGTTGTTGTTGTTGCTGCTGGTGCCAAAAGCGTGACCAAAAAACGCTCTGGGTGTGGTTTTTGTGCTTGTTGAT TTGACTGGAACAAGCGATGATGATGATGAACCGTGGGTCAAATGTTTCAGCTGAAGGTGGGTATTGAATCAATCAATGTT TCTTCTTAGAATCTGAGGTTTTTTTTGTTGTGGTGGCTGATTTTTTTGTTGTTTGTGGTGGAGCAGTGGGTGGTTCCGGT GGGAGTGGCGATGAGCTGTATGAGCCGCTTTGGAAGCTGAGCGCGGGACCACTGGTTGATGTTCCTCGTGTTGGACAGAG GGTCTTCTATTTCCCTCAGGGGCACATGGAACAAGTGAGTTTTTTTTTTTGTATTCTTCCCTTTTGTTGTGTTACTTTGT TTCCTTTTCTTCTCTTATTTTCAGGAAATTTTTGTTGTCTTAAAATGGAATTGATGGGTATTTTTCTTATGATATGCTGA ATTTAATGTTTATTTTCCCTTTTTTTCTTCAAATTCTTACCTTGTTTTGTTGTTTTTTGTTGTTGTAGTTAGAGGCTTCA ACCAATCAGGAGCTGAATCAGAGGATTCCTCTCTTGAAGCTTCCAACAAAGATCCTTTGTAGAGTTGTGAATGTTCATTT AATGGTAATTTTCCCCCTAATAATCTTCATACCTTCAATTTTTTATTTTTTTATTTTTTGAAAAATTGTATGAAGGGAAA ATTGTAAATCTTGTTTGGTTGTCTCAAGGGATGGTCAGAGGATCATCTGAGTTGTCTCAAGTTAGCAAAATCTTACTTTA AATTTTGGTATGTTTTAGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTTTGGTGCCCGAATCTAATGTAAG GCTCCGCCCCTTTTAATTTTCGGTGCTTTTTGTGGTCAACCTTGGATTCTTTTCTTACCTTGTTTAGACTCTTAACAAAT TTATTAGCAAGATGAGCCGACAAGCCCTGATCCGTGCCCTGCTGAACCTCCGAAGCCAACAGTTCACTCGTTTTGCAAGG TCTTGACCGCTTCGGATACAAGTACTCATGGGGGCTTCTCTGTTCTCAGGAAACATGCCACAGAATGCCTTCCTGCTTTG GTAATACTATCTGTTTCATTTTTAGTACATTTCTTGTTGGTTTCAACTTTCCACTCCTAGATCGCTTTAGGCCCTAGCGA TGTCTGAAAAAACCTTCTGAATTTTCTTTTATTAGGACATGTCACAACAAACACCAACCCAGGAATTGGTTGCCAAGGAT CTTCTTGGTTACGAATGGCGCTTCAAGCATATATTTCGAGGTAAATGGCATGAGAAGTTTAGGTTTCCGTCCTTGTGATT TGACTTTCTAATCGCCTAATGATTTTCCCTTGAACTTTTTTCTTTCAGGCCAGCCACGGAGACACCTGCTTACAACTGGA TGGAGTACTTTTGTGACCTCCAAAAGATTAGTTGCCGGAGATACCTTTGTGTTTTTGAGGTAAACATTAATTGCTTTCTT GGTTTCATTCATATGGTTTGGATATCTTCTGGATTCTACTGTAAGTTCATTTTAGAGTTCATCTGTTTTGTTATACAAGT TTTACTGTAACTAAGATCTTATGTGTAGAGGGGAAAATGGGGAATTACGTGTTGGAGTGAGGCGTCTTGCTCGTCAGCCA AGTAGCATGCCGTCGTCTGTGATTTCCAGTCAGAGCATGCACCTCGGAGTTCTGGCTACTGCCTCACATGCTGTTGCAAC TCAAACTCTATTTGTAGTATATTATAAGCCAAGGTAAATAATATTTTACTTGTTTCAGGAACAAAAAAAAATTTGTTAGT GATAAATCATTATGATTGTTGACATGAGTGAGCTTTTGTTTGCTTAGGACAAGCCAATTCATCATAAGCGTGAATAAGTA TTTGGAGGCCATGAACAACAAGTTCAGTCTTGGCATGAGGCTGAAGATGAGGTTCGAGGCGGATGATGCCTCTGAGACAG ACAAAAGGTAGTAAAATACTAAAATCCATTGCAGTTAGTTTATTATGTTACCTTTTCCCTCTTAGTCTAACACAAGTTTC ATCAGATTCTCGGGTACCATAGTTGGAGTAGAAGATATTTCTCCTCATTGGGTGAATTCGAAATGGCGTTCACTTAAGGT ATTGTAATTTTTTACTCTGCAATGGTTTTTTTTTCCTCCAGCAATTGTATTTTATTTATAATTTTCTTTGTCAATCCCCA GGTTCAATGGGATGAACCTGCAGCTGTTACAAGACCCGATAGGGTTTCACCATGGGAGATAGAACCCTTTGTGGCTTCTG CTTCCACACCCTCAGTTCAACCTACAGTTGTAAAAACTAAAAGGCCTCGACAACCAAGCGAAATTCCAGATGTTGGTGAG AAATTGTTTCTAATAACTCCTCCCATTTTTTATATTGATTGAGTTAATAGATTTGTTTGACCCTCTGAATTTTACTTTCA AACTAGACACAACATCAGCTGCCTCTGCTTTTTGGGATGCTGGAATGAAACATGCTGACATGACACAACTTGGTGTTTTA TCTGAAAGCAAAAGAAGCGATGTGAGTGGTATGTGGCATCATAAGCAAACTGATATGAATAGTAAAACCAACAGCAACAC TATGTCAAGGAACCAGACAGAAGCAAGTTGGCTATCTTCTCCCCATTCGAGTTATCCTTCTCATTTAGTTCAGGACACAA CAGATGATAGCAAGAGCGTCTCAGCCTGGCCTGTTTCAAAGCCTCATGCATCCAGAATGAACATCGATTACGTGCTTGAT CAAGTTGACAAGGAGAGCAAAGTTGAGACTGCTACGAGTTATCGCTTGTTTGGAATTGACCTTATCGATCATTCCAGGAA CTCAGCTGCTGCAGAAAATGCATCTCCACATGTAGTAAATGTACCCAGAGCTGAAGTCTGTGCCACTGCCAGCACCTTGT CCAAAACTGATAGTGGCTCTAAGTCAGATATCTCGAAGGCTTCCGAGAGAAAACAAGAACAGCAGCAAGTACCCCAGAAG GAGACTCAGAGCAAGCAAATTTGTGGCCGAAGTCGCACCAAGGTGTTGATTAGAGATTGTGTATTTAGATGATGGTTTTA GATGTTTTATAATATAGTCTAATAAGAAAAGTTTCTGACTAAGCTTTCTATTGTTGTTCAAAACCTGGCAAAAGGTTCAA ATGCAGGGGGTTGCAGTGGGTCGTGCGGTGGACTTGAACACGTTGGATGGTTATGATCAACTTATAGATGAACTGGAGCA GCTGTTTGACTTAAAGGGACAACTTCAACACAGAAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGC TTGTGGGAGATGATCCATGGCCGTGAGTATCTCCTTAAACCGCTCTCTAGAAAATTAAGAGAATTGGAGAGGGAAAAAAT GAGAGTGTAGATATATCATCAATCAGTGTCAAAACTGCACCTTTTATTATACCCATTAATTTAACCATCTCTCCTTAATA ACACCAAGCTAATTGGTATCATTCTTTTCTTGCAGTGAATTTTGTAATATGGTGAAAAGAATCTTCATTTGCTCCAGCCA GGATGTGAAGAAGATGAGTTCAGGAAGCAAACTACCAATCTCTTCCATGGAAGAAGGGACTGTAATAAGCTCAGAGACAA CCGAAACCTGAAACTTTAACTCTCAGTCTCTTGTCATTTTACCTTTGTGTTTTTGTCAACACCCAACTGTTAATCCTTGT TGCTGCTGCTGTTTGTGGGAAGGAAGTTGTGGTCTATTTTGGCTAGGTAAGTTTCATGTATTAGATGTGAAACACTAGCT AATTGTAACTTAATTTGTAGAGACACCAGGCATTAATTGTGCTAGAAAGACCAAAAAAAAGGTTACTTTAATAAATTAGT GGGAGATGTCAAGTTTAGGCTTAGGATCTGTGAATATATTCATGTTAAGTTGGAAGAGTGTTGGGGATTGATGTGTATTA AGACTTGTCTTTTTTGGTTAAGAGGCCTATTTGTGCTTGTGTTCATAGTGTGCACTGTTGTGCCTTCAAAATATTCCAAT TTGGTTGAGTCAATGTCTATTGCTGTCATCAGTGGATTTTAATTATGGCATTAAATTTCTGCAATTGTATTGTTCAGAAT TCAGATACCGTGGTCCACTGCACCAGTGTGGCAGTGATTCACCTGACACCCAAATTTCAATTGAGGCCCATGTATTCTTC CCAATTGAGTCAGTTCTCAATAGTTGGTAAAATTTAATTTTACCTCAGATCTCAATAAAGAAGAGTTATTGTATGGACAA TGTTGTTCCATTCGAACTATATTTCTAGCTATATTTTCATATTATAAAAAAAATTTGGTTGTACATGAATCATCATGGTC CTTTCAAAAAAAATATGCAATCATGGTAGAGTGTGTTTGGTTCTGCCAATCAAAATTGTACGTATCCTTAAATTCAAATG CTGTGTGAATGAACAAATAACAACACTGATGGTATTTTTGTGCTTTGGCCTTCTCTAAGTGGTATTGAATGTTTAAGATC TGATTCGTTCAGGGAAGAAAGTAACATTCTGAATTAATATTTAGTATTTACTATAGTAGGTGTTTTTCTAACACATTTAC TATAGTAGTTTTTTTTTTGAACAGTACTATAGTAGTTGATGAAACTGAAAGTAGTTATTTATTGTCAATGTGATT
CDS sequence (LotjaGi3g1v0227600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATGATGAACCGTGGGTCAAATGTTTCAGCTGAAGTGGGTGGTTCCGGTGGGAGTGGCGATGAGCTGTATGAGCC GCTTTGGAAGCTGAGCGCGGGACCACTGGTTGATGTTCCTCGTGTTGGACAGAGGGTCTTCTATTTCCCTCAGGGGCACA TGGAACAATTAGAGGCTTCAACCAATCAGGAGCTGAATCAGAGGATTCCTCTCTTGAAGCTTCCAACAAAGATCCTTTGT AGAGTTGTGAATGTTCATTTAATGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTTTGGTGCCCGAATCTAA TCAAGATGAGCCGACAAGCCCTGATCCGTGCCCTGCTGAACCTCCGAAGCCAACAGTTCACTCGTTTTGCAAGGTCTTGA CCGCTTCGGATACAAGTACTCATGGGGGCTTCTCTGTTCTCAGGAAACATGCCACAGAATGCCTTCCTGCTTTGGACATG TCACAACAAACACCAACCCAGGAATTGGTTGCCAAGGATCTTCTTGGTTACGAATGGCGCTTCAAGCATATATTTCGAGG CCAGCCACGGAGACACCTGCTTACAACTGGATGGAGTACTTTTGTGACCTCCAAAAGATTAGTTGCCGGAGATACCTTTG TGTTTTTGAGAGGGGAAAATGGGGAATTACGTGTTGGAGTGAGGCGTCTTGCTCGTCAGCCAAGTAGCATGCCGTCGTCT GTGATTTCCAGTCAGAGCATGCACCTCGGAGTTCTGGCTACTGCCTCACATGCTGTTGCAACTCAAACTCTATTTGTAGT ATATTATAAGCCAAGGACAAGCCAATTCATCATAAGCGTGAATAAGTATTTGGAGGCCATGAACAACAAGTTCAGTCTTG GCATGAGGCTGAAGATGAGGTTCGAGGCGGATGATGCCTCTGAGACAGACAAAAGATTCTCGGGTACCATAGTTGGAGTA GAAGATATTTCTCCTCATTGGGTGAATTCGAAATGGCGTTCACTTAAGGTTCAATGGGATGAACCTGCAGCTGTTACAAG ACCCGATAGGGTTTCACCATGGGAGATAGAACCCTTTGTGGCTTCTGCTTCCACACCCTCAGTTCAACCTACAGTTGTAA AAACTAAAAGGCCTCGACAACCAAGCGAAATTCCAGATGTTGACACAACATCAGCTGCCTCTGCTTTTTGGGATGCTGGA ATGAAACATGCTGACATGACACAACTTGGTGTTTTATCTGAAAGCAAAAGAAGCGATGTGAGTGGTATGTGGCATCATAA GCAAACTGATATGAATAGTAAAACCAACAGCAACACTATGTCAAGGAACCAGACAGAAGCAAGTTGGCTATCTTCTCCCC ATTCGAGTTATCCTTCTCATTTAGTTCAGGACACAACAGATGATAGCAAGAGCGTCTCAGCCTGGCCTGTTTCAAAGCCT CATGCATCCAGAATGAACATCGATTACGTGCTTGATCAAGTTGACAAGGAGAGCAAAGTTGAGACTGCTACGAGTTATCG CTTGTTTGGAATTGACCTTATCGATCATTCCAGGAACTCAGCTGCTGCAGAAAATGCATCTCCACATGTAGTAAATGTAC CCAGAGCTGAAGTCTGTGCCACTGCCAGCACCTTGTCCAAAACTGATAGTGGCTCTAAGTCAGATATCTCGAAGGCTTCC GAGAGAAAACAAGAACAGCAGCAAGTACCCCAGAAGGAGACTCAGAGCAAGCAAATTTGTGGCCGAAGTCGCACCAAGGT TCAAATGCAGGGGGTTGCAGTGGGTCGTGCGGTGGACTTGAACACGTTGGATGGTTATGATCAACTTATAGATGAACTGG AGCAGCTGTTTGACTTAAAGGGACAACTTCAACACAGAAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATG ATGCTTGTGGGAGATGATCCATGGCCTGAATTTTGTAATATGGTGAAAAGAATCTTCATTTGCTCCAGCCAGGATGTGAA GAAGATGAGTTCAGGAAGCAAACTACCAATCTCTTCCATGGAAGAAGGGACTGTAATAAGCTCAGAGACAACCGAAACCT GA
Protein sequence (LotjaGi3g1v0227600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMMMNRGSNVSAEVGGSGGSGDELYEPLWKLSAGPLVDVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILC RVVNVHLMAEQETDEVYAQITLVPESNQDEPTSPDPCPAEPPKPTVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDM SQQTPTQELVAKDLLGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQPSSMPSS VISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKYLEAMNNKFSLGMRLKMRFEADDASETDKRFSGTIVGV EDISPHWVNSKWRSLKVQWDEPAAVTRPDRVSPWEIEPFVASASTPSVQPTVVKTKRPRQPSEIPDVDTTSAASAFWDAG MKHADMTQLGVLSESKRSDVSGMWHHKQTDMNSKTNSNTMSRNQTEASWLSSPHSSYPSHLVQDTTDDSKSVSAWPVSKP HASRMNIDYVLDQVDKESKVETATSYRLFGIDLIDHSRNSAAAENASPHVVNVPRAEVCATASTLSKTDSGSKSDISKAS ERKQEQQQVPQKETQSKQICGRSRTKVQMQGVAVGRAVDLNTLDGYDQLIDELEQLFDLKGQLQHRNKWEIVFTDDEGDM MLVGDDPWPEFCNMVKRIFICSSQDVKKMSSGSKLPISSMEEGTVISSETTET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 682 | 665 | 0.0 | – | |
| PANTHER | 18 | 682 | 665 | 0.0 | – | |
| SUPERFAMILY | 120 | 258 | 139 | 4.05E-39 | ||
| Gene3D | 126 | 230 | 105 | 4.9E-44 | ||
| CDD | 127 | 229 | 103 | 1.69354E-20 | ||
| Pfam | 129 | 229 | 101 | 1.5E-21 | ||
| ProSiteProfiles | 129 | 231 | 103 | 11.956 | ||
| SMART | 129 | 231 | 103 | 3.3E-20 | ||
| Pfam | 255 | 336 | 82 | 4.5E-30 | ||
| Gene3D | 290 | 365 | 76 | 6.5E-30 | – | |
| MobiDBLite | 370 | 389 | 20 | - | – | |
| MobiDBLite | 449 | 473 | 25 | - | – | |
| MobiDBLite | 449 | 477 | 29 | - | – | |
| Pfam | 462 | 618 | 157 | 5.7E-7 | ||
| MobiDBLite | 542 | 582 | 41 | - | – | |
| MobiDBLite | 554 | 568 | 15 | - | – | |
| Gene3D | 578 | 670 | 93 | 1.3E-35 | – | |
| ProSiteProfiles | 582 | 663 | 82 | 26.411 | ||
| SUPERFAMILY | 583 | 658 | 76 | 8.83E-13 | – | |
| Coils | 606 | 626 | 21 | - | – | |
| Pfam | 625 | 666 | 42 | 1.4E-6 | ||
| MobiDBLite | 670 | 693 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi3g1v0227600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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