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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0227600 |
| Transcript ID | LotjaGi3g1v0227600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT4G23980.1 auxin response factor 9; Swiss-Prot: sp|Q9XED8|ARFI_ARATH Auxin response factor 9; TrEMBL-Plants: tr|I1JM14|I1JM14_SOYBN Auxin response factor; Found in the gene: LotjaGi3g1v0227600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:35454684..35458275) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGATGAACCGTGGGTCAAATGTTTCAGCTGAAGGTGGGTATTGAATCAATCAATGTTTCTTCTTAGAATCTGAGGT TTTTTTTGTTGTGGTGGCTGATTTTTTTGTTGTTTGTGGTGGAGCAGTGGGTGGTTCCGGTGGGAGTGGCGATGAGCTGT ATGAGCCGCTTTGGAAGCTGAGCGCGGGACCACTGGTTGATGTTCCTCGTGTTGGACAGAGGGTCTTCTATTTCCCTCAG GGGCACATGGAACAAGTGAGTTTTTTTTTTTGTATTCTTCCCTTTTGTTGTGTTACTTTGTTTCCTTTTCTTCTCTTATT TTCAGGAAATTTTTGTTGTCTTAAAATGGAATTGATGGGTATTTTTCTTATGATATGCTGAATTTAATGTTTATTTTCCC TTTTTTTCTTCAAATTCTTACCTTGTTTTGTTGTTTTTTGTTGTTGTAGTTAGAGGCTTCAACCAATCAGGAGCTGAATC AGAGGATTCCTCTCTTGAAGCTTCCAACAAAGATCCTTTGTAGAGTTGTGAATGTTCATTTAATGGTAATTTTCCCCCTA ATAATCTTCATACCTTCAATTTTTTATTTTTTTATTTTTTGAAAAATTGTATGAAGGGAAAATTGTAAATCTTGTTTGGT TGTCTCAAGGGATGGTCAGAGGATCATCTGAGTTGTCTCAAGTTAGCAAAATCTTACTTTAAATTTTGGTATGTTTTAGG CTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTTTGGTGCCCGAATCTAATGTAAGGCTCCGCCCCTTTTAATTT TCGGTGCTTTTTGTGGTCAACCTTGGATTCTTTTCTTACCTTGTTTAGACTCTTAACAAATTTATTAGCAAGATGAGCCG ACAAGCCCTGATCCGTGCCCTGCTGAACCTCCGAAGCCAACAGTTCACTCGTTTTGCAAGGTCTTGACCGCTTCGGATAC AAGTACTCATGGGGGCTTCTCTGTTCTCAGGAAACATGCCACAGAATGCCTTCCTGCTTTGGTAATACTATCTGTTTCAT TTTTAGTACATTTCTTGTTGGTTTCAACTTTCCACTCCTAGATCGCTTTAGGCCCTAGCGATGTCTGAAAAAACCTTCTG AATTTTCTTTTATTAGGACATGTCACAACAAACACCAACCCAGGAATTGGTTGCCAAGGATCTTCTTGGTTACGAATGGC GCTTCAAGCATATATTTCGAGGTAAATGGCATGAGAAGTTTAGGTTTCCGTCCTTGTGATTTGACTTTCTAATCGCCTAA TGATTTTCCCTTGAACTTTTTTCTTTCAGGCCAGCCACGGAGACACCTGCTTACAACTGGATGGAGTACTTTTGTGACCT CCAAAAGATTAGTTGCCGGAGATACCTTTGTGTTTTTGAGGTAAACATTAATTGCTTTCTTGGTTTCATTCATATGGTTT GGATATCTTCTGGATTCTACTGTAAGTTCATTTTAGAGTTCATCTGTTTTGTTATACAAGTTTTACTGTAACTAAGATCT TATGTGTAGAGGGGAAAATGGGGAATTACGTGTTGGAGTGAGGCGTCTTGCTCGTCAGCCAAGTAGCATGCCGTCGTCTG TGATTTCCAGTCAGAGCATGCACCTCGGAGTTCTGGCTACTGCCTCACATGCTGTTGCAACTCAAACTCTATTTGTAGTA TATTATAAGCCAAGGTAAATAATATTTTACTTGTTTCAGGAACAAAAAAAAATTTGTTAGTGATAAATCATTATGATTGT TGACATGAGTGAGCTTTTGTTTGCTTAGGACAAGCCAATTCATCATAAGCGTGAATAAGTATTTGGAGGCCATGAACAAC AAGTTCAGTCTTGGCATGAGGCTGAAGATGAGGTTCGAGGCGGATGATGCCTCTGAGACAGACAAAAGGTAGTAAAATAC TAAAATCCATTGCAGTTAGTTTATTATGTTACCTTTTCCCTCTTAGTCTAACACAAGTTTCATCAGATTCTCGGGTACCA TAGTTGGAGTAGAAGATATTTCTCCTCATTGGGTGAATTCGAAATGGCGTTCACTTAAGGTATTGTAATTTTTTACTCTG CAATGGTTTTTTTTTCCTCCAGCAATTGTATTTTATTTATAATTTTCTTTGTCAATCCCCAGGTTCAATGGGATGAACCT GCAGCTGTTACAAGACCCGATAGGGTTTCACCATGGGAGATAGAACCCTTTGTGGCTTCTGCTTCCACACCCTCAGTTCA ACCTACAGTTGTAAAAACTAAAAGGCCTCGACAACCAAGCGAAATTCCAGATGTTGGTGAGAAATTGTTTCTAATAACTC CTCCCATTTTTTATATTGATTGAGTTAATAGATTTGTTTGACCCTCTGAATTTTACTTTCAAACTAGACACAACATCAGC TGCCTCTGCTTTTTGGGATGCTGGAATGAAACATGCTGACATGACACAACTTGGTGTTTTATCTGAAAGCAAAAGAAGCG ATGTGAGTGGTATGTGGCATCATAAGCAAACTGATATGAATAGTAAAACCAACAGCAACACTATGTCAAGGAACCAGACA GAAGCAAGTTGGCTATCTTCTCCCCATTCGAGTTATCCTTCTCATTTAGTTCAGGACACAACAGATGATAGCAAGAGCGT CTCAGCCTGGCCTGTTTCAAAGCCTCATGCATCCAGAATGAACATCGATTACGTGCTTGATCAAGTTGACAAGGAGAGCA AAGTTGAGACTGCTACGAGTTATCGCTTGTTTGGAATTGACCTTATCGATCATTCCAGGAACTCAGCTGCTGCAGAAAAT GCATCTCCACATGTAGTAAATGTACCCAGAGCTGAAGTCTGTGCCACTGCCAGCACCTTGTCCAAAACTGATAGTGGCTC TAAGTCAGATATCTCGAAGGCTTCCGAGAGAAAACAAGAACAGCAGCAAGTACCCCAGAAGGAGACTCAGAGCAAGCAAA TTTGTGGCCGAAGTCGCACCAAGGTGTTGATTAGAGATTGTGTATTTAGATGATGGTTTTAGATGTTTTATAATATAGTC TAATAAGAAAAGTTTCTGACTAAGCTTTCTATTGTTGTTCAAAACCTGGCAAAAGGTTCAAATGCAGGGGGTTGCAGTGG GTCGTGCGGTGGACTTGAACACGTTGGATGGTTATGATCAACTTATAGATGAACTGGAGCAGCTGTTTGACTTAAAGGGA CAACTTCAACACAGAAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTGGGAGATGATCCATG GCCGTGAGTATCTCCTTAAACCGCTCTCTAGAAAATTAAGAGAATTGGAGAGGGAAAAAATGAGAGTGTAGATATATCAT CAATCAGTGTCAAAACTGCACCTTTTATTATACCCATTAATTTAACCATCTCTCCTTAATAACACCAAGCTAATTGGTAT CATTCTTTTCTTGCAGTGAATTTTGTAATATGGTGAAAAGAATCTTCATTTGCTCCAGCCAGGATGTGAAGAAGATGAGT TCAGGAAGCAAACTACCAATCTCTTCCATGGAAGAAGGGACTGTAATAAGCTCAGAGACAACCGAAACCTGA
CDS sequence (LotjaGi3g1v0227600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATGAACCGTGGGTCAAATGTTTCAGCTGAAGGTGGTGGCGATGAGCTGTATGAGCCGCTTTGGAAGCTGAGCGC GGGACCACTGGTTGATGTTCCTCGTGTTGGACAGAGGGTCTTCTATTTCCCTCAGGGGCACATGGAACAATTAGAGGCTT CAACCAATCAGGAGCTGAATCAGAGGATTCCTCTCTTGAAGCTTCCAACAAAGATCCTTTGTAGAGTTGTGAATGTTCAT TTAATGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTTTGGTGCCCGAATCTAATCAAGATGAGCCGACAAG CCCTGATCCGTGCCCTGCTGAACCTCCGAAGCCAACAGTTCACTCGTTTTGCAAGGTCTTGACCGCTTCGGATACAAGTA CTCATGGGGGCTTCTCTGTTCTCAGGAAACATGCCACAGAATGCCTTCCTGCTTTGGACATGTCACAACAAACACCAACC CAGGAATTGGTTGCCAAGGATCTTCTTGGTTACGAATGGCGCTTCAAGCATATATTTCGAGGCCAGCCACGGAGACACCT GCTTACAACTGGATGGAGTACTTTTGTGACCTCCAAAAGATTAGTTGCCGGAGATACCTTTGTGTTTTTGAGAGGGGAAA ATGGGGAATTACGTGTTGGAGTGAGGCGTCTTGCTCGTCAGCCAAGTAGCATGCCGTCGTCTGTGATTTCCAGTCAGAGC ATGCACCTCGGAGTTCTGGCTACTGCCTCACATGCTGTTGCAACTCAAACTCTATTTGTAGTATATTATAAGCCAAGGAC AAGCCAATTCATCATAAGCGTGAATAAGTATTTGGAGGCCATGAACAACAAGTTCAGTCTTGGCATGAGGCTGAAGATGA GGTTCGAGGCGGATGATGCCTCTGAGACAGACAAAAGATTCTCGGGTACCATAGTTGGAGTAGAAGATATTTCTCCTCAT TGGGTGAATTCGAAATGGCGTTCACTTAAGGTTCAATGGGATGAACCTGCAGCTGTTACAAGACCCGATAGGGTTTCACC ATGGGAGATAGAACCCTTTGTGGCTTCTGCTTCCACACCCTCAGTTCAACCTACAGTTGTAAAAACTAAAAGGCCTCGAC AACCAAGCGAAATTCCAGATGTTGACACAACATCAGCTGCCTCTGCTTTTTGGGATGCTGGAATGAAACATGCTGACATG ACACAACTTGGTGTTTTATCTGAAAGCAAAAGAAGCGATGTGAGTGGTATGTGGCATCATAAGCAAACTGATATGAATAG TAAAACCAACAGCAACACTATGTCAAGGAACCAGACAGAAGCAAGTTGGCTATCTTCTCCCCATTCGAGTTATCCTTCTC ATTTAGTTCAGGACACAACAGATGATAGCAAGAGCGTCTCAGCCTGGCCTGTTTCAAAGCCTCATGCATCCAGAATGAAC ATCGATTACGTGCTTGATCAAGTTGACAAGGAGAGCAAAGTTGAGACTGCTACGAGTTATCGCTTGTTTGGAATTGACCT TATCGATCATTCCAGGAACTCAGCTGCTGCAGAAAATGCATCTCCACATGTAGTAAATGTACCCAGAGCTGAAGTCTGTG CCACTGCCAGCACCTTGTCCAAAACTGATAGTGGCTCTAAGTCAGATATCTCGAAGGCTTCCGAGAGAAAACAAGAACAG CAGCAAGTACCCCAGAAGGAGACTCAGAGCAAGCAAATTTGTGGCCGAAGTCGCACCAAGGTTCAAATGCAGGGGGTTGC AGTGGGTCGTGCGGTGGACTTGAACACGTTGGATGGTTATGATCAACTTATAGATGAACTGGAGCAGCTGTTTGACTTAA AGGGACAACTTCAACACAGAAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTGGGAGATGAT CCATGGCCGTGA
Protein sequence (LotjaGi3g1v0227600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMMNRGSNVSAEGGGDELYEPLWKLSAGPLVDVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCRVVNVH LMAEQETDEVYAQITLVPESNQDEPTSPDPCPAEPPKPTVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQQTPT QELVAKDLLGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQPSSMPSSVISSQS MHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKYLEAMNNKFSLGMRLKMRFEADDASETDKRFSGTIVGVEDISPH WVNSKWRSLKVQWDEPAAVTRPDRVSPWEIEPFVASASTPSVQPTVVKTKRPRQPSEIPDVDTTSAASAFWDAGMKHADM TQLGVLSESKRSDVSGMWHHKQTDMNSKTNSNTMSRNQTEASWLSSPHSSYPSHLVQDTTDDSKSVSAWPVSKPHASRMN IDYVLDQVDKESKVETATSYRLFGIDLIDHSRNSAAAENASPHVVNVPRAEVCATASTLSKTDSGSKSDISKASERKQEQ QQVPQKETQSKQICGRSRTKVQMQGVAVGRAVDLNTLDGYDQLIDELEQLFDLKGQLQHRNKWEIVFTDDEGDMMLVGDD PWP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 642 | 631 | 0.0 | – | |
| PANTHER | 12 | 642 | 631 | 0.0 | – | |
| SUPERFAMILY | 114 | 252 | 139 | 3.53E-39 | ||
| Gene3D | 120 | 224 | 105 | 4.4E-44 | ||
| CDD | 121 | 223 | 103 | 1.56235E-20 | ||
| SMART | 123 | 225 | 103 | 3.3E-20 | ||
| ProSiteProfiles | 123 | 225 | 103 | 11.956 | ||
| Pfam | 123 | 223 | 101 | 1.3E-21 | ||
| Pfam | 249 | 330 | 82 | 4.0E-30 | ||
| Gene3D | 284 | 359 | 76 | 5.8E-30 | – | |
| MobiDBLite | 364 | 383 | 20 | - | – | |
| MobiDBLite | 443 | 471 | 29 | - | – | |
| MobiDBLite | 443 | 467 | 25 | - | – | |
| Pfam | 452 | 612 | 161 | 3.2E-7 | ||
| MobiDBLite | 536 | 576 | 41 | - | – | |
| MobiDBLite | 548 | 562 | 15 | - | – | |
| Gene3D | 572 | 643 | 72 | 1.2E-25 | – | |
| ProSiteProfiles | 576 | 643 | 68 | 22.691 | ||
| SUPERFAMILY | 577 | 642 | 66 | 5.49E-10 | – | |
| Coils | 600 | 620 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi3g1v0227600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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