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LotjaGi3g1v0228300.1

Overview

Field Value
Gene ID LotjaGi3g1v0228300
Transcript ID LotjaGi3g1v0228300.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT1G55510.1 branched-chain alpha-keto acid decarboxylase E1 beta subunit; Swiss-Prot: sp|Q9SAV3|ODBB1_ARATH 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial; TrEMBL-Plants: tr|G7JTF7|G7JTF7_MEDTR Branched chain alpha-keto acid dehydrogenase E1 beta subunit; Found in the gene: LotjaGi3g1v0228300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:35537871..35544439) extracted from Lotus japonicus Gifu genome v1.2.

GAAAATTGCAATAATGTATTTCAATGCAACAATTGAGAAGAAATAATTTGTGTGGATCCAAAAAAACACAATTTGAACAC GTTTACTTCAACATAAATTCACATTGAATTCAAAAGAAATCTAAATACACAGCTGATAGCCATGAGACATATCCGGCGGC GCTCTAAGCGATAGAGCCAAAATCAATTTAACCATATATTACAAGAATTAATAGAGGTAGCTGAGTTGGATAGGAAGCTT GAGTCATACACAGATCAGAACTTATCTGCTTTATTTTTCTTGTCTGTTTATCCAGTATCAGGAAATAACAACACGTGCTG TTGGCATGTTTCAATTTTGGATTCTTTGCACCCAACACTCAAAAATCTAAGAGAAAAAGAAAAGCTTAATCTAATTCAAC ATCTCAATAACATCATCATCAATAAACATGTCAACCTGTGTTGGGAAATTCCGAAGATGCGCCTCTTTGGTTTCCCGGAG GAGATTCTCCACCACCACCACCTCCTGCACTCAGAAGGATGCAGCTGAGCAAGGTTTGAAATCAATGAACCTTTATTCTG CCATTAACCAAGCTCTCCACATTGCCTTGGACTCTGATCCTCGGTGGGTACCCTTCAATTTACTTGTTTTATCAGTCATA ATTGTTTCTAACTTTTTGAGTTGCAATCTTTTGATTTAATTTTTTTCCCTTTGTCTATTAGATATGTTTTTGAGTTATTG CAGTTAGTAAATAAAATTGGGTGATGAAATGGTTTGAAAGTGTCATTATTTTTCCAATTTTCTTTCTTTTGGTGAGTATC ATTTGAATTGTGCCCTTTTAAGACTGTAAGGTAAAATTGATTGTTCCAACTGCAAAATCACAGAAAAGAAATTGGGTTAG AGATCAAGGGGGGAAGAAACATTCAATTCAATTGTAATATCTAAAATCATTCCAAGTTATTTCAAATCCTGGGCTTATTT AGTTAGTGTTCAAAATTTGTTCTTTACTTTAGATTTTGAGCTTCAATCAGGGAGTTGTATATCTAGGATCTATATAGTAT TGAATTGGGAGGATTAAAAATAGTTGCTTGTAAATCCTAAGTCTCAACTCCTTTATTTCGAGATTGGAATTGCAACTAAG GTTGCTATTTGAAGCTTTATATTTGAGCACCTGAATGGACAAAAACTGTTCCAGTTTTCATCATATATTATATATCTCAG CTTTGGCATGCTTCTTTTAATATGAGTTCAATTGGTAGACCACCAATCTGAGATTGATATCAAGTGTCTCTGTTACATGT CCTAATTTAAAATTTTGTAAGTTGCAATGTTTTAAGTCGTTTTTTATTTTCAAATTTCACTGTTTGAAACAGCCAAACTA CATCTGTGGCTTATTTGATTCTATATTTGTCAACATAAACATTCTGCATGCATCCTTATCTTCTCTTGCACTTCATCCTA GTGCTTATGTTTTCGGAGAGGATGTAAGCTTTGGTGGGGTCTTCCGTTGCACGACTGGATTAGCAGATCGATTTGGGAAA AATAGGGTTCTCAATACTCCTCTCTGTGAGCAGGTACTTAATTATGTTTTTCATGATGCCTCTGCACTCCCTATTTTCTT CCTCTTCTCTTCCCATTTCCCCTTGTAAATTTATATATTTAAGAAGTGTGGAAACACCATTCTAAAATTTCACAAGCCAC AAGAAAATCCTAGCAATGGAACAAAAGATGAAAAAATACTTTTGTATGCAAAAAGGGCCGGGGAAAAATAAATAGAGAAG ATCATTTTCTAGAGCATGGTTTGGTGTAATCTTCCCCTGCAATTGTACCCTAATAATTTGATTGGCCGGTTTACTGAATT TCTGGTTTTTTTTTTTTTGCTAAATTTCTTTCTATCTATTCCTGTAATTACTATTCCCTAACCATTATCTTGAAAATTGT ATACTGAAATGCTACTGACAGGGTATCATTGGCTTTGGCATTGGTCTAGCAGCCATGGTGAGTCTAAGAGGTTAAAAAGT TCACTTCCAGTTTTTCCATCAATCCTTACTACAGTCTGATATGATTAATATGGTTTCATATATCTGAGTTTAAGCTCTTT ATGTATTTTTCATGGCAGGGTAATCGCGCCATAGCAGAAATCCAGTTTGCAGACTACATTTTTCCTGCTTTTGACCAGGC ATGCTCCCTTCACATGGCTTGGTTTAGTCAAAGCATCTTTTGATCAGTAATTGACCAATTTTTGTTTCCAGATTGTCAAT GAAGCTGCTAAATTCAGATATCGGAGTGGAAACCAATTTAATTGTGGTGGTAAATTTCTTTTACTGGTTTAGTGTTATAG TTACTGGCTTATCTCTATTTTCACTTGTTGCGTTAAAAACTTTTACACATTTGTATAGGCTTAACAATTAGAGCCCCTTA TGGAGCCGTGGGCCATGGTGGGCATTACCACTCTCAATCCCCTGAGGCTTTCTTCTGCCATGTTCCTGGTATCAAGGTAT GGTGCTTTCATTCTGACTTCAGTCTATTAACTAGAACCTTATTTTTTTTTACTATACTGTTATTGTCCCTTCTCTCGAAC AATAAAGGCCACTTGCAAAAATGCGGTGTTTGACAGTTCTATAGACTATTGAAATTATAAAATGTCTAGTACTATGCGTC AAGAATCTAATTCCAGCCAAAATAGTTCACTCATGCGATTAAGAATATTATCAGGTGAACAAAAGGGGTCTGCACATATA GTCAAATAATTAGATAGAGAAAGATTGAGGAAAACTTAGGTCAAGCCATTCTATCATGAGATTTGATTCATAACTAGGCA ATATGGTGTTGTTTTATCCATTTATCTGATTGCGTGGTAGGAAAAGGCTCTGGTTGGTTGTTATCTTTGTAGTGAAAACA GGTTTGAATAGGGGTAATTGAAGTCACGGATTTCACGCTAATGAAATGGATATATTCTACTGAGTTATGTACATGGATAT AAGTTTCCATGGGGTTCCTTCCTATAAACATGGAAGCAGTCAAATTCATGACCAGTGACTTGCATATACCTACTGGGTGT AGTTTACTTGGAACAATGCACATAGATTTGGCTAATTCTTTGTGCACCTTGGGATATCATGAAAATTATTGTATATCTCA CATTGCTTGCAGGAAAACTAAATTTCTCACTTTATAATTTTTTACATAATTGATACTTTTTTTTCAACTGCCTGAATAGA GTTTCTTGTATAGGTGGTTATCCCTCGCAGTCCGCAGCAAGCAAAAGGATTGTTGCTATCTAGTATACGAGATCCAAATC CTGTTGTATTTTTTGAGCCAAAGGTTGTATTCTATTAGAATAACCTTAATGGATTGTGTGTACATATTTATAGTATGTGA CTTTTGGAACTTAAATTGTGCGATTCTCGGTTTCAGTGGCTTTACCGTTTGGCTGTTGAAGAAGTACCAGAGGATGATTA CATGTTGCCTTTGTCTGAGGCCGAGGTACACCACAAGTCAAACTAAATGGAAGAAGGAAAAGAAGTTCTACATAAGATTA TTGACAGATTATCCTCTAAAACGCTTACTCTGATGAATATTAAAATTTGTGCTCAGGTGGTTCGGCAAGGATCTGATATT ACACTTGTTGGATGGGGAGCCCAATTATCTATAATGGAACAAGCTTGCGCTGATGCTGAAAAAGTAAGTGGCTGTTGCAT TGCAAGTGAAAGCGCTTAGAACATAGTCTGCATTTCTACACCATATTTGTGTTTACTTTTGATTATGGTGGGCAAACGCT GGAGGATTTCTCTTGATAGTGATACAACCTAAAATCTAAGGACACACGAAATGATTGAGGTTGGAGTTTGATGATTATTC ACCCTTTTCCTGATTGCATTAGATATGGAAGGGAAACTGGTTCAGTACGCAGATTGATAAATTAGGATAAAGTAGGATAA GAAATTGTGATTAAATAGCATAAACGAGAAAATAATTTTTCACATTTAAATTATGTACATATGCCTAATAATTTGTGATG TAAATCAATATACTCACGAATTATAATTATCCTATATATTTAGGAATCCTGAACTATTAAAAAATAAGAGAAAATAGGCA AAAAAAAATGAGCCCATTAGTTTATGTCATGTAAATGAATGCACAATAATGATACTTAGATACTCAAACAGAGTAGACAC CCTATTTTTCTCTCGATCTCTCTTCTTATCACATATCTATCATATAACACATTTATTACTTCTCTCTCTTCTCTTTCTTT CTTACTCCGGGTGTCTCTTGAATGTATGTGCTATGTAGATGTCTACGAATCATTGTCCGTTAACACATGTCAAAGTGAAA TTGTTGCCTAATGCAGCTCAGTACAATGTCAATTTTGGAATGGGGTTATTCTATATTTTTCAGTTACACTCAGAGTAAGC AGGAAAATAAATTACGTACTGTTGTTCCACCTTGCACAGAATCACCAGTCCATCTTGTTAAGGATAGAATTGTGATTTGA GCATTTTGGCTTGGATTGGAATCATCATCTTAGCTATTTTTAATTCAATCAAATATAAGAATCATCGTTTCCATCCTATG AACCCAGAATGTCTGTCAATGCACGCAGAAAACTAGCTAGTAGAAGATATGGTTTGTATTGAGAAAAATATTATATTTCA TTATACTTGTACTTGATCTTATTCATTAGAGCACAACAATATGTAGGGATTCTTTTCCGATGTATTAAAAAAAAACAATA TGTAGGGAATCTAACTAAAACAAGAGGATCTCATTCACAGGTTATCTTATTTTCTAATGACTTGACAACTTTACACTACT TAATCTCAATTTATAATTTATGCATTTACTTCAGAACAGAGGCTTAATATTTCTGTAAAAGAAAGTTTGACATTATTAAT TTCCTATTTCTATGATAACTTATAACCTGCATTTGAGGAATTTGATTCTTATCTAGAAATCCAGATTTTTATATCTATTG AATTGTAATTTTGTTATGAGATTCTGCAGGAGGGAATTTCTTGTGAATTGATAGATCTGAAGACACTAATTCCTTGGGAT AAGGAAACAGTGGAGGCCTCAGTTAAGAAGACAGGAAGACTGCTTGTAAGTAAATTGTTTATTGTAATACTGTAATTTGG TTGGTGTTTCCTTGCTTGATGCATTCAATTTACTGTGTAGGTTAGTCATGAAGCTCCTATAACTGGAGGTTTTGGTGCTG AAATCTCGGCTTCCATTGTTGAGCGCTGCTTCTCAAGGGTATGCTCCAACCTTTAGTTCATAACTCCATGTACAAATTTT TTAGGCCAACATGATATAATTTCCGACAAGCTTGGAGACAATTTTTTATTGCTATTTCCACCACACTCTGCCCCTATATC CTAAATAGCCAAATATATCTTTGATAATATCATGAGAAAATTTTAACTTGTCATCACATATTTGCATGTGAGAAGATAGG GATATATATCCTAGTGTAAGTCAATTCCAAAAGAATACTATCATCACATATTTTTCGTCAATCAAATTCTACTCTCAACA ATAGGGCTATGTTCATCTTCATTAGCATTCTCACAAACATGTAAAATCTCAAAATTCACCACACCCAAACTGGAGAGCAA GGAAGAACACTTCACTCGAGATGAAAAGGAACAATTGGACCTAAAAACCAAATTTATAAAGGCTTGGGTGTTTCTTTAAG GTGTAAAACTGTGCATACTTTTTATTTGAAGCAAACTTCAAGGAAATGGTTATATATATGCCTTGAAGATTAGCCAAGTT CAACCAGGACATGTCTCAAGCCTGTCTTTCTGTTTTGTGGTACAGCTAGAGGCCCCTGTTGCAAGAGTTTGCGGTCTAGA CACTCCTTTTCCTCTGGTTTTTGAACCCTTCTACATGCCAACCAAGAATAAGGTAACTTGTTTATCTTCATTCTGTTAAA ATGTTTTATATATGAAATGGTGAAATGCGGTCTCGACTAATACGAGCTTCTGTCAATCATTTGATGCAGATATTGGATGC AATTAAATCAACAGTCAACTACTGATGTGCTTAATCACTTTATCTTGGCCATATATGTGATCTTAGTGCAATCATCATAT GATCATGTTCTTGGTTAGGGATGCATTAGTGTGACGCAGATCATTGTATTAGGGGGAAACTCAAAATTCATCTTTCCCTA TTGTTCATATGCGAAAAATGAAAAATCAACAAAAGCACAATGGCAATGTACATGTAATGCTTTCAACTTTCTTGTATGAT GGCCTATGTGCTGAGAAATGTAAAATGTCTCCATTAGTAATTCTCTCACAATAAATGGATGCTTTCCTTTGAACTGTGAT AGTGATCACTGAATCAAATATGTACAACTTGTGGCACAGTAAATTTGGACTTCATATTTGTATAGCTTGGATAATTGCAA GCATATTTTAGGTCGACCTTGTTGAGAAAGAATTCCTATAGCAGACACCGGTTTCAGTGATGAAAGACTAGGTAAATTTT GGCTTGGCCAAAATGGACATGCTGATCATTGCATGTGTAAGTGTCCATTTCGGACCCTGTGCATCTTGTGTTTGTTAAAT CTCTAATTG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0228300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAACCTGTGTTGGGAAATTCCGAAGATGCGCCTCTTTGGTTTCCCGGAGGAGATTCTCCACCACCACCACCTCCTG CACTCAGAAGGATGCAGCTGAGCAAGGTTTGAAATCAATGAACCTTTATTCTGCCATTAACCAAGCTCTCCACATTGCCT TGGACTCTGATCCTCGTGCTTATGTTTTCGGAGAGGATGTAAGCTTTGGTGGGGTCTTCCGTTGCACGACTGGATTAGCA GATCGATTTGGGAAAAATAGGGTTCTCAATACTCCTCTCTGTGAGCAGGGTATCATTGGCTTTGGCATTGGTCTAGCAGC CATGGGTAATCGCGCCATAGCAGAAATCCAGTTTGCAGACTACATTTTTCCTGCTTTTGACCAGATTGTCAATGAAGCTG CTAAATTCAGATATCGGAGTGGAAACCAATTTAATTGTGGTGGCTTAACAATTAGAGCCCCTTATGGAGCCGTGGGCCAT GGTGGGCATTACCACTCTCAATCCCCTGAGGCTTTCTTCTGCCATGTTCCTGGTATCAAGGTGGTTATCCCTCGCAGTCC GCAGCAAGCAAAAGGATTGTTGCTATCTAGTATACGAGATCCAAATCCTGTTGTATTTTTTGAGCCAAAGTGGCTTTACC GTTTGGCTGTTGAAGAAGTACCAGAGGATGATTACATGTTGCCTTTGTCTGAGGCCGAGGTGGTTCGGCAAGGATCTGAT ATTACACTTGTTGGATGGGGAGCCCAATTATCTATAATGGAACAAGCTTGCGCTGATGCTGAAAAAGAGGGAATTTCTTG TGAATTGATAGATCTGAAGACACTAATTCCTTGGGATAAGGAAACAGTGGAGGCCTCAGTTAAGAAGACAGGAAGACTGC TTGTTAGTCATGAAGCTCCTATAACTGGAGGTTTTGGTGCTGAAATCTCGGCTTCCATTGTTGAGCGCTGCTTCTCAAGG CTAGAGGCCCCTGTTGCAAGAGTTTGCGGTCTAGACACTCCTTTTCCTCTGGTTTTTGAACCCTTCTACATGCCAACCAA GAATAAGATATTGGATGCAATTAAATCAACAGTCAACTACTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0228300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTCVGKFRRCASLVSRRRFSTTTTSCTQKDAAEQGLKSMNLYSAINQALHIALDSDPRAYVFGEDVSFGGVFRCTTGLA DRFGKNRVLNTPLCEQGIIGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPYGAVGH GGHYHSQSPEAFFCHVPGIKVVIPRSPQQAKGLLLSSIRDPNPVVFFEPKWLYRLAVEEVPEDDYMLPLSEAEVVRQGSD ITLVGWGAQLSIMEQACADAEKEGISCELIDLKTLIPWDKETVEASVKKTGRLLVSHEAPITGGFGAEISASIVERCFSR LEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKSTVNY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE
SignalP-TM
1 21 21 - –
PANTHER
PTHR42980
19 360 342 1.9E-203 –
PANTHER
PTHR42980:SF1
19 360 342 1.9E-203 –
Gene3D
G3DSA:3.40.50.970
37 228 192 3.9E-91 –
SUPERFAMILY
SSF52518
39 240 202 1.93E-67
IPR029061
Pfam
PF02779
40 214 175 6.3E-44
IPR005475
SMART
SM00861
40 215 176 9.4E-64
IPR005475
CDD
cd07036
45 210 166 1.04276E-96 –
SUPERFAMILY
SSF52922
224 360 137 3.93E-39
IPR009014
Gene3D
G3DSA:3.40.50.920
229 360 132 3.4E-52
IPR009014
Pfam
PF02780
231 350 120 9.3E-36
IPR033248
Coils
Coil
355 360 6 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0228300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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