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LotjaGi3g1v0228300.3

Overview

Field Value
Gene ID LotjaGi3g1v0228300
Transcript ID LotjaGi3g1v0228300.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT1G55510.1 branched-chain alpha-keto acid decarboxylase E1 beta subunit; Swiss-Prot: sp|Q9SAV3|ODBB1_ARATH 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial; TrEMBL-Plants: tr|A0A1J7I0V9|A0A1J7I0V9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0228300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:35538298..35543154) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCAACCTGTGTTGGGAAATTCCGAAGATGCGCCTCTTTGGTTTCCCGGAGGAGATTCTCCACCACCACCACCTCCTG CACTCAGAAGGATGCAGCTGAGCAAGGTTTGAAATCAATGAACCTTTATTCTGCCATTAACCAAGCTCTCCACATTGCCT TGGACTCTGATCCTCGGTGGGTACCCTTCAATTTACTTGTTTTATCAGTCATAATTGTTTCTAACTTTTTGAGTTGCAAT CTTTTGATTTAATTTTTTTCCCTTTGTCTATTAGATATGTTTTTGAGTTATTGCAGTTAGTAAATAAAATTGGGTGATGA AATGGTTTGAAAGTGTCATTATTTTTCCAATTTTCTTTCTTTTGGTGAGTATCATTTGAATTGTGCCCTTTTAAGACTGT AAGGTAAAATTGATTGTTCCAACTGCAAAATCACAGAAAAGAAATTGGGTTAGAGATCAAGGGGGGAAGAAACATTCAAT TCAATTGTAATATCTAAAATCATTCCAAGTTATTTCAAATCCTGGGCTTATTTAGTTAGTGTTCAAAATTTGTTCTTTAC TTTAGATTTTGAGCTTCAATCAGGGAGTTGTATATCTAGGATCTATATAGTATTGAATTGGGAGGATTAAAAATAGTTGC TTGTAAATCCTAAGTCTCAACTCCTTTATTTCGAGATTGGAATTGCAACTAAGGTTGCTATTTGAAGCTTTATATTTGAG CACCTGAATGGACAAAAACTGTTCCAGTTTTCATCATATATTATATATCTCAGCTTTGGCATGCTTCTTTTAATATGAGT TCAATTGGTAGACCACCAATCTGAGATTGATATCAAGTGTCTCTGTTACATGTCCTAATTTAAAATTTTGTAAGTTGCAA TGTTTTAAGTCGTTTTTTATTTTCAAATTTCACTGTTTGAAACAGCCAAACTACATCTGTGGCTTATTTGATTCTATATT TGTCAACATAAACATTCTGCATGCATCCTTATCTTCTCTTGCACTTCATCCTAGTGCTTATGTTTTCGGAGAGGATGTAA GCTTTGGTGGGGTCTTCCGTTGCACGACTGGATTAGCAGATCGATTTGGGAAAAATAGGGTTCTCAATACTCCTCTCTGT GAGCAGGTACTTAATTATGTTTTTCATGATGCCTCTGCACTCCCTATTTTCTTCCTCTTCTCTTCCCATTTCCCCTTGTA AATTTATATATTTAAGAAGTGTGGAAACACCATTCTAAAATTTCACAAGCCACAAGAAAATCCTAGCAATGGAACAAAAG ATGAAAAAATACTTTTGTATGCAAAAAGGGCCGGGGAAAAATAAATAGAGAAGATCATTTTCTAGAGCATGGTTTGGTGT AATCTTCCCCTGCAATTGTACCCTAATAATTTGATTGGCCGGTTTACTGAATTTCTGGTTTTTTTTTTTTTGCTAAATTT CTTTCTATCTATTCCTGTAATTACTATTCCCTAACCATTATCTTGAAAATTGTATACTGAAATGCTACTGACAGGGTATC ATTGGCTTTGGCATTGGTCTAGCAGCCATGGTGAGTCTAAGAGGTTAAAAAGTTCACTTCCAGTTTTTCCATCAATCCTT ACTACAGTCTGATATGATTAATATGGTTTCATATATCTGAGTTTAAGCTCTTTATGTATTTTTCATGGCAGGGTAATCGC GCCATAGCAGAAATCCAGTTTGCAGACTACATTTTTCCTGCTTTTGACCAGGCATGCTCCCTTCACATGGCTTGGTTTAG TCAAAGCATCTTTTGATCAGTAATTGACCAATTTTTGTTTCCAGATTGTCAATGAAGCTGCTAAATTCAGATATCGGAGT GGAAACCAATTTAATTGTGGTGGTAAATTTCTTTTACTGGTTTAGTGTTATAGTTACTGGCTTATCTCTATTTTCACTTG TTGCGTTAAAAACTTTTACACATTTGTATAGGCTTAACAATTAGAGCCCCTTATGGAGCCGTGGGCCATGGTGGGCATTA CCACTCTCAATCCCCTGAGGCTTTCTTCTGCCATGTTCCTGGTATCAAGGTATGGTGCTTTCATTCTGACTTCAGTCTAT TAACTAGAACCTTATTTTTTTTTACTATACTGTTATTGTCCCTTCTCTCGAACAATAAAGGCCACTTGCAAAAATGCGGT GTTTGACAGTTCTATAGACTATTGAAATTATAAAATGTCTAGTACTATGCGTCAAGAATCTAATTCCAGCCAAAATAGTT CACTCATGCGATTAAGAATATTATCAGGTGAACAAAAGGGGTCTGCACATATAGTCAAATAATTAGATAGAGAAAGATTG AGGAAAACTTAGGTCAAGCCATTCTATCATGAGATTTGATTCATAACTAGGCAATATGGTGTTGTTTTATCCATTTATCT GATTGCGTGGTAGGAAAAGGCTCTGGTTGGTTGTTATCTTTGTAGTGAAAACAGGTTTGAATAGGGGTAATTGAAGTCAC GGATTTCACGCTAATGAAATGGATATATTCTACTGAGTTATGTACATGGATATAAGTTTCCATGGGGTTCCTTCCTATAA ACATGGAAGCAGTCAAATTCATGACCAGTGACTTGCATATACCTACTGGGTGTAGTTTACTTGGAACAATGCACATAGAT TTGGCTAATTCTTTGTGCACCTTGGGATATCATGAAAATTATTGTATATCTCACATTGCTTGCAGGAAAACTAAATTTCT CACTTTATAATTTTTTACATAATTGATACTTTTTTTTCAACTGCCTGAATAGAGTTTCTTGTATAGGTGGTTATCCCTCG CAGTCCGCAGCAAGCAAAAGGATTGTTGCTATCTAGTATACGAGATCCAAATCCTGTTGTATTTTTTGAGCCAAAGGTTG TATTCTATTAGAATAACCTTAATGGATTGTGTGTACATATTTATAGTATGTGACTTTTGGAACTTAAATTGTGCGATTCT CGGTTTCAGTGGCTTTACCGTTTGGCTGTTGAAGAAGTACCAGAGGATGATTACATGTTGCCTTTGTCTGAGGCCGAGGT ACACCACAAGTCAAACTAAATGGAAGAAGGAAAAGAAGTTCTACATAAGATTATTGACAGATTATCCTCTAAAACGCTTA CTCTGATGAATATTAAAATTTGTGCTCAGGTGGTTCGGCAAGGATCTGATATTACACTTGTTGGATGGGGAGCCCAATTA TCTATAATGGAACAAGCTTGCGCTGATGCTGAAAAAGTAAGTGGCTGTTGCATTGCAAGTGAAAGCGCTTAGAACATAGT CTGCATTTCTACACCATATTTGTGTTTACTTTTGATTATGGTGGGCAAACGCTGGAGGATTTCTCTTGATAGTGATACAA CCTAAAATCTAAGGACACACGAAATGATTGAGGTTGGAGTTTGATGATTATTCACCCTTTTCCTGATTGCATTAGATATG GAAGGGAAACTGGTTCAGTACGCAGATTGATAAATTAGGATAAAGTAGGATAAGAAATTGTGATTAAATAGCATAAACGA GAAAATAATTTTTCACATTTAAATTATGTACATATGCCTAATAATTTGTGATGTAAATCAATATACTCACGAATTATAAT TATCCTATATATTTAGGAATCCTGAACTATTAAAAAATAAGAGAAAATAGGCAAAAAAAAATGAGCCCATTAGTTTATGT CATGTAAATGAATGCACAATAATGATACTTAGATACTCAAACAGAGTAGACACCCTATTTTTCTCTCGATCTCTCTTCTT ATCACATATCTATCATATAACACATTTATTACTTCTCTCTCTTCTCTTTCTTTCTTACTCCGGGTGTCTCTTGAATGTAT GTGCTATGTAGATGTCTACGAATCATTGTCCGTTAACACATGTCAAAGTGAAATTGTTGCCTAATGCAGCTCAGTACAAT GTCAATTTTGGAATGGGGTTATTCTATATTTTTCAGTTACACTCAGAGTAAGCAGGAAAATAAATTACGTACTGTTGTTC CACCTTGCACAGAATCACCAGTCCATCTTGTTAAGGATAGAATTGTGATTTGAGCATTTTGGCTTGGATTGGAATCATCA TCTTAGCTATTTTTAATTCAATCAAATATAAGAATCATCGTTTCCATCCTATGAACCCAGAATGTCTGTCAATGCACGCA GAAAACTAGCTAGTAGAAGATATGGTTTGTATTGAGAAAAATATTATATTTCATTATACTTGTACTTGATCTTATTCATT AGAGCACAACAATATGTAGGGATTCTTTTCCGATGTATTAAAAAAAAACAATATGTAGGGAATCTAACTAAAACAAGAGG ATCTCATTCACAGGTTATCTTATTTTCTAATGACTTGACAACTTTACACTACTTAATCTCAATTTATAATTTATGCATTT ACTTCAGAACAGAGGCTTAATATTTCTGTAAAAGAAAGTTTGACATTATTAATTTCCTATTTCTATGATAACTTATAACC TGCATTTGAGGAATTTGATTCTTATCTAGAAATCCAGATTTTTATATCTATTGAATTGTAATTTTGTTATGAGATTCTGC AGGAGGGAATTTCTTGTGAATTGATAGATCTGAAGACACTAATTCCTTGGGATAAGGAAACAGTGGAGGCCTCAGTTAAG AAGACAGGAAGACTGCTTGTAAGTAAATTGTTTATTGTAATACTGTAATTTGGTTGGTGTTTCCTTGCTTGATGCATTCA ATTTACTGTGTAGGTTAGTCATGAAGCTCCTATAACTGGAGGTTTTGGTGCTGAAATCTCGGCTTCCATTGTTGAGCGCT GCTTCTCAAGGGTATGCTCCAACCTTTAGTTCATAACTCCATGTACAAATTTTTTAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0228300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAACCTGTGTTGGGAAATTCCGAAGATGCGCCTCTTTGGTTTCCCGGAGGAGATTCTCCACCACCACCACCTCCTG CACTCAGAAGGATGCAGCTGAGCAAGGTTTGAAATCAATGAACCTTTATTCTGCCATTAACCAAGCTCTCCACATTGCCT TGGACTCTGATCCTCGTGCTTATGTTTTCGGAGAGGATGTAAGCTTTGGTGGGGTCTTCCGTTGCACGACTGGATTAGCA GATCGATTTGGGAAAAATAGGGTTCTCAATACTCCTCTCTGTGAGCAGGGTATCATTGGCTTTGGCATTGGTCTAGCAGC CATGATTGTCAATGAAGCTGCTAAATTCAGATATCGGAGTGGAAACCAATTTAATTGTGGTGGCTTAACAATTAGAGCCC CTTATGGAGCCGTGGGCCATGGTGGGCATTACCACTCTCAATCCCCTGAGGCTTTCTTCTGCCATGTTCCTGGTATCAAG GTGGTTATCCCTCGCAGTCCGCAGCAAGCAAAAGGATTGTTGCTATCTAGTATACGAGATCCAAATCCTGTTGTATTTTT TGAGCCAAAGTGGCTTTACCGTTTGGCTGTTGAAGAAGTACCAGAGGATGATTACATGTTGCCTTTGTCTGAGGCCGAGG TGGTTCGGCAAGGATCTGATATTACACTTGTTGGATGGGGAGCCCAATTATCTATAATGGAACAAGCTTGCGCTGATGCT GAAAAAGAGGGAATTTCTTGTGAATTGATAGATCTGAAGACACTAATTCCTTGGGATAAGGAAACAGTGGAGGCCTCAGT TAAGAAGACAGGAAGACTGCTTGTTAGTCATGAAGCTCCTATAACTGGAGGTTTTGGTGCTGAAATCTCGGCTTCCATTG TTGAGCGCTGCTTCTCAAGGGTATGCTCCAACCTTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0228300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTCVGKFRRCASLVSRRRFSTTTTSCTQKDAAEQGLKSMNLYSAINQALHIALDSDPRAYVFGEDVSFGGVFRCTTGLA DRFGKNRVLNTPLCEQGIIGFGIGLAAMIVNEAAKFRYRSGNQFNCGGLTIRAPYGAVGHGGHYHSQSPEAFFCHVPGIK VVIPRSPQQAKGLLLSSIRDPNPVVFFEPKWLYRLAVEEVPEDDYMLPLSEAEVVRQGSDITLVGWGAQLSIMEQACADA EKEGISCELIDLKTLIPWDKETVEASVKKTGRLLVSHEAPITGGFGAEISASIVERCFSRVCSNL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE
SignalP-TM
1 21 21 - –
PANTHER
PTHR42980:SF1
19 108 90 2.7E-161 –
PANTHER
PTHR42980
19 108 90 2.7E-161 –
Gene3D
G3DSA:3.40.50.970
37 107 71 7.3E-26 –
SUPERFAMILY
SSF52518
39 220 182 4.07E-54
IPR029061
SMART
SM00861
40 195 156 1.4E-43
IPR005475
CDD
cd07036
45 190 146 6.72664E-79 –
Pfam
PF02779
107 194 88 3.4E-20
IPR005475
Gene3D
G3DSA:3.40.50.970
108 208 101 3.0E-45 –
PANTHER
PTHR42980:SF1
109 301 193 2.7E-161 –
PANTHER
PTHR42980
109 301 193 2.7E-161 –
SUPERFAMILY
SSF52922
204 299 96 1.7E-28
IPR009014
Gene3D
G3DSA:3.40.50.920
209 304 96 3.1E-37
IPR009014
Pfam
PF02780
211 301 91 2.0E-28
IPR033248

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0228300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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