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LotjaGi3g1v0231500.1

Overview

Field Value
Gene ID LotjaGi3g1v0231500
Transcript ID LotjaGi3g1v0231500.1
Lotus japonicus genome version Gifu v1.2
Description Zinc finger homeodomain protein; TAIR: AT5G42780.1 homeobox protein 27; Swiss-Prot: sp|Q9FMY7|ZHD13_ARATH Zinc-finger homeodomain protein 13; TrEMBL-Plants: tr|K7LVB6|K7LVB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0231500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:36331674..36332538) extracted from Lotus japonicus Gifu genome v1.2.

CCCCGTTCCAAGTGACCACATTTATCTGGCTCTTCAGTTCTATTTAAGTCTCTCTCATTCATCGCAAATACACAACCTTC TATCCCAAAAATTTACCTATCATATCATATATCTTAATGTCACAGGAAACCATGTCTGACACTGAGATCAATTTCCCCCC ACCAGGTTTTGACCAAGAGGTCGTGTACAAGGAGTGCAAACGCAACCACTCGGCGTCACTAAACCGTGTTTCCTATGATG GGTGCCAAGAGTTTCTCAAAGCAGGTGTTGAGAGCAACACTAAAGATGCTATGTTATGTGTTGTTTGTGGGTGTCACCAA AATTTTCATGTGCAAGTTAGGCTGAATGGAGAAACTAACCCTAAGAAGGAGATGATGTCGGTGCCGCCGAAGAGGAAAAA GAGAACGGTTTTCACACCAATATCGAAGAACCGGATGAAAGAATTTGCTGAAAGGATAGGGTGGAAACTTACAACGGGTA AAAAGGAGGAAATTGATCATCTTTGCTTGGAGATTGGAATTAGTCTCAAAACATTCTCAGTGTGGTTGAACAATCATCGT CCTCGAGCGATAAAAATGGAAAAACAGTGAATGGAAAAGCCAAGGGGCAACGACTGCACAACATCCTTTCTAATTGGCAT TTGAGTTTTTTCCTTAATTGGTCTAATGTACTGTTAGTGAAAAAGTTAACTTTTATTTATGAATATGGGTTAGGATTTCC TTTGTCTGCTTCTTGTCTTTTGTATTTTTTTCAATGTTTATCTTTAATATGTTCTCTTTTTTTTAAGTGTCTGGGTTTTT AGTGGTTTACCTTGGATAACTTCTATTTTAGAGTGGATTGTTATCTTTGTTATGTCAACTTAAAT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0231500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCACAGGAAACCATGTCTGACACTGAGATCAATTTCCCCCCACCAGGTTTTGACCAAGAGGTCGTGTACAAGGAGTG CAAACGCAACCACTCGGCGTCACTAAACCGTGTTTCCTATGATGGGTGCCAAGAGTTTCTCAAAGCAGGTGTTGAGAGCA ACACTAAAGATGCTATGTTATGTGTTGTTTGTGGGTGTCACCAAAATTTTCATGTGCAAGTTAGGCTGAATGGAGAAACT AACCCTAAGAAGGAGATGATGTCGGTGCCGCCGAAGAGGAAAAAGAGAACGGTTTTCACACCAATATCGAAGAACCGGAT GAAAGAATTTGCTGAAAGGATAGGGTGGAAACTTACAACGGGTAAAAAGGAGGAAATTGATCATCTTTGCTTGGAGATTG GAATTAGTCTCAAAACATTCTCAGTGTGGTTGAACAATCATCGTCCTCGAGCGATAAAAATGGAAAAACAGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0231500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSQETMSDTEINFPPPGFDQEVVYKECKRNHSASLNRVSYDGCQEFLKAGVESNTKDAMLCVVCGCHQNFHVQVRLNGET NPKKEMMSVPPKRKKRTVFTPISKNRMKEFAERIGWKLTTGKKEEIDHLCLEIGISLKTFSVWLNNHRPRAIKMEKQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31948
18 82 65 7.3E-38 –
PANTHER
PTHR31948:SF66
18 82 65 7.3E-38 –
Pfam
PF04770
22 73 52 2.0E-18
IPR006456
TIGRFAM
TIGR01566
24 71 48 1.0E-16
IPR006456
ProSiteProfiles
PS51523
24 74 51 19.247
IPR006456
Gene3D
G3DSA:1.10.10.60
77 152 76 8.5E-19 –
SUPERFAMILY
SSF46689
85 151 67 9.21E-13
IPR009057
PANTHER
PTHR31948
87 150 64 7.3E-38 –
PANTHER
PTHR31948:SF66
87 150 64 7.3E-38 –
TIGRFAM
TIGR01565
92 148 57 1.1E-18
IPR006455
CDD
cd00086
93 155 63 0.00312669
IPR001356

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0231500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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