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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0231700 |
| Transcript ID | LotjaGi3g1v0231700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dof zinc finger protein; TAIR: AT3G55370.2 OBF-binding protein 3; Swiss-Prot: sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6; TrEMBL-Plants: tr|V7AL92|V7AL92_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0231700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:36352805..36354655) extracted from Lotus japonicus Gifu genome v1.2.
GCTTCTTTCTTTGTTGCTTTCTCTCCTCTATCTGAAGCTCGCCCACACACTACTCTTTCTCTCTCTCTACCATGTTGATG TGATTCTCTCCCCATCTCCCAAAACCCACCACCATCAAACCTTTACAAAAAGAGAAAGCACCAAGAGAGAACCATGGTTT TTACTTCCATACCAGTAGCTTATCTTGATGCAGCCAACTGGCACCAACAGGTAAAATAAAAAGGGTTTCGTCAATTTGGT TCTTCCAGTGTTTTCATTGTCCAAAAAAGGCAAAAGAATTCAAAAGAAAATATATTCTTGCTCTTTTTGCTTATACCTCT GGTAGGAAGGAATTATCTAACTTAAAGAATAAAAACAAAATGACATAGCGAAACTCAACTTTCTCAATAATTCCATTCAT CATCTTCAGATCTTACCTTTTATTTTTAGGGATGATCCCTTAAGATAACTATAACCATACAAGTTGCAAACATCATGTTA TACGAAGAACGTTCTATCTAAAATTATTAATTCAAAAGTAATATTGCATCTATTTGGATTTGTAAATGATTCTTGAATAT ACCATATATTTGATTTCTTTGCTTTATTAATCATTGTTTTCATTTCACTCTTCTCATTTCCTTCTTATTTTATGTTCCCT GCAGCAACCAAATCATCAACCTGGAAACAACAATTCCACCTCTCAGCAGCGGCTTCCTCCACCGCCTCCACCTCCACCAC CACCCCATGGAGCCGGTGGCACCGGCTCAATCAGGTGGGAATGGATAGCAGAGAGAGCAAGGATGGCCAACAGGCCTAAG CCGGAGACTGCACTGAAATGCCCACGTTGCCATTCCACCAACACAAAATTCTGCTATTATAACAATTACAGCTTCTCTCA GCCACGCTACATATGCAAGGCCTGCAGTAGGTACTGGACCAGCGGGGGCACCTTGAGAGACGTCCCCGTCGGCGGCGGCT ACCGGAAGAACAAGAGAGGCAAAGTAGGCAGCAGCAGCAGCACCATGAAGTCCCCGGCGAGCTCTGACCGCCAAACGGGG AGTACTAGTTTTAACAAGTCTGTGTCCTCCACCGGTGGCGGCCATGCTGAAGGCCTCTCTCCCCAGGTGCCACAAGTGAT GTTCATGGCTCCGTTGCATCATCAATTCTCGGAGTTTGGAAGTGGAGATATGATGGGGTTAAACTATGGCCTCAGGTATT GCCCCATTTCCGGTCCAATGGGAGGAGGAATAGGGGACCTTGGTTTCCAGATAGGAAGTGGTTTAGGTGGTGGTGGCGGC AACCATGGTGGCGGGGGTGGTGTGCCACAAATGCAGCAATTCCCTTTCTTGGCTGGTTTGGAAGGTTCACTGGTTGGTTT GTACCACCACCCTTTTGAAGGCAGTGTTCATCATCATGAGGTAATTGGATATGGTTCCGGTGGTGGTCATGGGGTGAGCC ATTTGAGGCCAAAGGTTTCAACTTCTGGGTTGATGACTCAATTTGCTTCAGTGAAAATGGAAGGTAGTAGAGAACTTAAT AATTTGTCAAGCCCCTTCTTGGGGACCAATAATATTAATCCCCCAAGTGAACAATATTGGAGCGGTACTAATTCTGCAGA TTGGACTGATATTATTGGTTTTAGCTCTTCTTCTACAACTAGCAACCAAATGTAGAGTTTTTCAGATTCTGTGAAGCTTC AGCTGGTACTTTTGATTAGTATGGCTTTCATTAACCTAGCTAAGACATGAATTCTTATCCAACTCCTATGAAGTGCTTTG AGATGAATGGTTATGTATGATGAGTGCTTTTTTTAAGTTTTCGTGTATATATATCTTCATGACTCACTTGCTAGTCAAAT TGAGCTATGGG
CDS sequence (LotjaGi3g1v0231700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTTTACTTCCATACCAGTAGCTTATCTTGATGCAGCCAACTGGCACCAACAGCAACCAAATCATCAACCTGGAAA CAACAATTCCACCTCTCAGCAGCGGCTTCCTCCACCGCCTCCACCTCCACCACCACCCCATGGAGCCGGTGGCACCGGCT CAATCAGGTGGGAATGGATAGCAGAGAGAGCAAGGATGGCCAACAGGCCTAAGCCGGAGACTGCACTGAAATGCCCACGT TGCCATTCCACCAACACAAAATTCTGCTATTATAACAATTACAGCTTCTCTCAGCCACGCTACATATGCAAGGCCTGCAG TAGGTACTGGACCAGCGGGGGCACCTTGAGAGACGTCCCCGTCGGCGGCGGCTACCGGAAGAACAAGAGAGGCAAAGTAG GCAGCAGCAGCAGCACCATGAAGTCCCCGGCGAGCTCTGACCGCCAAACGGGGAGTACTAGTTTTAACAAGTCTGTGTCC TCCACCGGTGGCGGCCATGCTGAAGGCCTCTCTCCCCAGGTGCCACAAGTGATGTTCATGGCTCCGTTGCATCATCAATT CTCGGAGTTTGGAAGTGGAGATATGATGGGGTTAAACTATGGCCTCAGGTATTGCCCCATTTCCGGTCCAATGGGAGGAG GAATAGGGGACCTTGGTTTCCAGATAGGAAGTGGTTTAGGTGGTGGTGGCGGCAACCATGGTGGCGGGGGTGGTGTGCCA CAAATGCAGCAATTCCCTTTCTTGGCTGGTTTGGAAGGTTCACTGGTTGGTTTGTACCACCACCCTTTTGAAGGCAGTGT TCATCATCATGAGGTAATTGGATATGGTTCCGGTGGTGGTCATGGGGTGAGCCATTTGAGGCCAAAGGTTTCAACTTCTG GGTTGATGACTCAATTTGCTTCAGTGAAAATGGAAGGTAGTAGAGAACTTAATAATTTGTCAAGCCCCTTCTTGGGGACC AATAATATTAATCCCCCAAGTGAACAATATTGGAGCGGTACTAATTCTGCAGATTGGACTGATATTATTGGTTTTAGCTC TTCTTCTACAACTAGCAACCAAATGTAG
Protein sequence (LotjaGi3g1v0231700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFTSIPVAYLDAANWHQQQPNHQPGNNNSTSQQRLPPPPPPPPPPHGAGGTGSIRWEWIAERARMANRPKPETALKCPR CHSTNTKFCYYNNYSFSQPRYICKACSRYWTSGGTLRDVPVGGGYRKNKRGKVGSSSSTMKSPASSDRQTGSTSFNKSVS STGGGHAEGLSPQVPQVMFMAPLHHQFSEFGSGDMMGLNYGLRYCPISGPMGGGIGDLGFQIGSGLGGGGGNHGGGGGVP QMQQFPFLAGLEGSLVGLYHHPFEGSVHHHEVIGYGSGGGHGVSHLRPKVSTSGLMTQFASVKMEGSRELNNLSSPFLGT NNINPPSEQYWSGTNSADWTDIIGFSSSSTTSNQM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 355 | 355 | 7.4E-101 | – | |
| PANTHER | 1 | 355 | 355 | 7.4E-101 | – | |
| MobiDBLite | 18 | 33 | 16 | - | – | |
| MobiDBLite | 18 | 53 | 36 | - | – | |
| MobiDBLite | 34 | 49 | 16 | - | – | |
| SUPERFAMILY | 37 | 46 | 10 | 7.59E-5 | – | |
| Pfam | 74 | 130 | 57 | 1.0E-31 | ||
| ProSiteProfiles | 76 | 130 | 55 | 27.577 | ||
| ProSitePatterns | 78 | 114 | 37 | - | ||
| MobiDBLite | 117 | 167 | 51 | - | – | |
| MobiDBLite | 131 | 167 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0231700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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