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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0231800 |
Transcript ID | LotjaGi3g1v0231800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Dof zinc finger protein; TAIR: AT2G37590.1 DNA binding with one finger 2.4; Swiss-Prot: sp|O80928|DOF24_ARATH Dof zinc finger protein DOF2.4; TrEMBL-Plants: tr|V7AL92|V7AL92_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0231800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:36395460..36397487) extracted from Lotus japonicus Gifu genome v1.2.
GGGAGAGAGAAAAAGAGAATGAATTAACAATTAGCCTTAAATTATATATAAATACCTATAAAGCCCCCTCCTTTATTTTT GCTGGTTCTCATTTCCACCTTGCAACAACAACCTTCCTTAGCTTCTTCCTTTGTTGCTTTCTCTCCTCTAGCTATCTGCA ACTTGGTAGCAACACACACACTTCACCTTCTCTCTCTACCTTGTTGATGTGATTCTCTCCACCACTATCAAACCTTTACA GAAAGAGAAAGCTCCAAGAGAGAACCATGGTTTTTACTTCCATACCAGCAGCTTATCTTGATGCATCCAACTGGCAGCAA CAGGTGGAATACCAAGGGTTTCTCCAATTTTGTTCTTGTAGTGTTTTAATTCTTTGTGCAAAAGGCAAAAGAATTCAAAA GATATTTCAAAAAGAAAAATATTCTTGCTACTTTTGCTTATACTCTTCTTGAATATACCAGATATATGATTTCTTTGCTT TATAGATCATTTTTAATTTTTTCACACTTCTCATTTTCATTTCTTCTTGCTTTATGTTTTGCAGCAACCAAATCATCAAC CAGGAAACAACAATTCCACCTCTCAGCACCTGCTCCCTCCTCCGCCTCCCCCTCCACTGCCACCCCATGGAGCCGGCGCC ATCAGGCCGGGATCGATGTCAGACAGAGCCAGGATGGCCAACGTGCCTATGCCGGACACCGCGCTGAAGTGTCCGCGCTG CGAGTCCACCAACACAAAATTCTGCTATTTCAACAACTATAGCCTCTCTCAGCCCCGTCACTTCTGCAAGACTTGCAGAA GGTACTGGACTAGAGGCGGTGCCTTGAGGAATGTCCCGGTCGGCGGGGGCTGCCGGAGGAACAAGAGAAGCAAAGGAGGC AGCAGCAGCAACAGCGCCGGCAAGTCCCCGGCCAGCTCGGACTGCCAGACCGGGAGTGGTTGTTCCACCAATTCAGTTTC CTCCAACAGTGGCCCTTCTGCTGCTGATATCTTAGGCCTTGGACCTCAGATTCCACCAATGAGGTTCATGGCTCCATTGC ATCATCATCAGTTCTCAGAGTTTGGAGCTGGTGGTGGTGGTGATATGGGGTTAAACTATGGTCTCAGTTACAACCCCATT TCAGGTGGTCCAATAGGAGGAGTAGGGGAGTTGAGTTTCCAGATAGGAGGTGCTAATTTAGGTGGTGGTGGTGGCGGCAG TGGTGGTGGTGGCGGTTGTGGTTCAATCTTATCTGGTTTGGACCAATGGCGTAGTGTGCCACAAACTCAGCAGTTTCCCT TCTTGGCTGGTCTGGAAGGTTCACCGGTTGGTTTGTACCACCACCCTTTTGAAGGCGGCAGTGTTCATCATCATGAGGTA ATTGGATATGGCTCCGGTGGTGGTCATAGTCTGAGTAATTTAAGGCCAAAGATTTCAACTTCTGGGTTGATGACTCAGCT TGCTTCAGTGAAAATGGAAGATAGTAGGGAACTTAATTTGCCAAGCCAGTTCTTAGGGACCAATAATTCTGCAAGTGAAC AATATTGGAGTACTACTACTGCTGGTACTAATTCTGCAGCTTGGACTGATATTTCTGGTTTTAGCTCTTCTTCTACAACT AGCAACCAAATGTAGAGTTTTTTAGATCCGGGTACTTTTGGTTAGTGTGGCTTCAATTTCTTTAACCTACCAAGAACACA AATTTTAGTCCAATTCCTATATATGAGTGCTTTGAGGATGGATATGAGTGCTTTTTATTTGCTTCTTTTAAGATTAAATG AAAACCCTTAGGGATGTTAGTTAGCTCTTTTTTCTTTTAATCATTATATGCTCTTTTTTATTTTCATTTTAATAGGTTTA GGTTGGTTTGTATGAGAATGTTGAAAATAGTAACATTATTATGAGTTCAAAAGAATGATTATTATCAATATGTTTGCTCA GTTTCATGGCTGCCATACATTTTCAAAAGGAAACTCTTCTTTTAGAGGTAAAGATTGTTGGATGTAATTTGGGGAATGTT TCACAGATTGAATTGGAGGATAATCCCA
CDS sequence (LotjaGi3g1v0231800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTTTACTTCCATACCAGCAGCTTATCTTGATGCATCCAACTGGCAGCAACAGCAACCAAATCATCAACCAGGAAA CAACAATTCCACCTCTCAGCACCTGCTCCCTCCTCCGCCTCCCCCTCCACTGCCACCCCATGGAGCCGGCGCCATCAGGC CGGGATCGATGTCAGACAGAGCCAGGATGGCCAACGTGCCTATGCCGGACACCGCGCTGAAGTGTCCGCGCTGCGAGTCC ACCAACACAAAATTCTGCTATTTCAACAACTATAGCCTCTCTCAGCCCCGTCACTTCTGCAAGACTTGCAGAAGGTACTG GACTAGAGGCGGTGCCTTGAGGAATGTCCCGGTCGGCGGGGGCTGCCGGAGGAACAAGAGAAGCAAAGGAGGCAGCAGCA GCAACAGCGCCGGCAAGTCCCCGGCCAGCTCGGACTGCCAGACCGGGAGTGGTTGTTCCACCAATTCAGTTTCCTCCAAC AGTGGCCCTTCTGCTGCTGATATCTTAGGCCTTGGACCTCAGATTCCACCAATGAGGTTCATGGCTCCATTGCATCATCA TCAGTTCTCAGAGTTTGGAGCTGGTGGTGGTGGTGATATGGGGTTAAACTATGGTCTCAGTTACAACCCCATTTCAGGTG GTCCAATAGGAGGAGTAGGGGAGTTGAGTTTCCAGATAGGAGGTGCTAATTTAGGTGGTGGTGGTGGCGGCAGTGGTGGT GGTGGCGGTTGTGGTTCAATCTTATCTGGTTTGGACCAATGGCGTAGTGTGCCACAAACTCAGCAGTTTCCCTTCTTGGC TGGTCTGGAAGGTTCACCGGTTGGTTTGTACCACCACCCTTTTGAAGGCGGCAGTGTTCATCATCATGAGGTAATTGGAT ATGGCTCCGGTGGTGGTCATAGTCTGAGTAATTTAAGGCCAAAGATTTCAACTTCTGGGTTGATGACTCAGCTTGCTTCA GTGAAAATGGAAGATAGTAGGGAACTTAATTTGCCAAGCCAGTTCTTAGGGACCAATAATTCTGCAAGTGAACAATATTG GAGTACTACTACTGCTGGTACTAATTCTGCAGCTTGGACTGATATTTCTGGTTTTAGCTCTTCTTCTACAACTAGCAACC AAATGTAG
Protein sequence (LotjaGi3g1v0231800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFTSIPAAYLDASNWQQQQPNHQPGNNNSTSQHLLPPPPPPPLPPHGAGAIRPGSMSDRARMANVPMPDTALKCPRCES TNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGGSSSNSAGKSPASSDCQTGSGCSTNSVSSN SGPSAADILGLGPQIPPMRFMAPLHHHQFSEFGAGGGGDMGLNYGLSYNPISGGPIGGVGELSFQIGGANLGGGGGGSGG GGGCGSILSGLDQWRSVPQTQQFPFLAGLEGSPVGLYHHPFEGGSVHHHEVIGYGSGGGHSLSNLRPKISTSGLMTQLAS VKMEDSRELNLPSQFLGTNNSASEQYWSTTTAGTNSAAWTDISGFSSSSTTSNQM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 375 | 375 | 3.7E-121 | – | |
PANTHER | 1 | 375 | 375 | 3.7E-121 | – | |
MobiDBLite | 14 | 33 | 20 | - | – | |
MobiDBLite | 14 | 56 | 43 | - | – | |
MobiDBLite | 34 | 49 | 16 | - | – | |
Pfam | 71 | 127 | 57 | 1.4E-32 | ||
ProSiteProfiles | 73 | 127 | 55 | 29.609 | ||
ProSitePatterns | 75 | 111 | 37 | - | ||
MobiDBLite | 117 | 159 | 43 | - | – | |
MobiDBLite | 127 | 159 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0231800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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