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LotjaGi3g1v0231900.1

Overview

Field Value
Gene ID LotjaGi3g1v0231900
Transcript ID LotjaGi3g1v0231900.1
Lotus japonicus genome version Gifu v1.2
Description Zinc finger homeodomain protein; TAIR: AT5G42780.1 homeobox protein 27; Swiss-Prot: sp|Q9FMY7|ZHD13_ARATH Zinc-finger homeodomain protein 13; TrEMBL-Plants: tr|A0A0L9VGB3|A0A0L9VGB3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0231900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:36452283..36453049) extracted from Lotus japonicus Gifu genome v1.2.

AAAAATTTTCCTTTCATATCATCCATCTTAATGTCAGAGGAAACCATGTCTGATACCGAGATCAACTTTCCCCCACCAGG TTTTGAGCAAGAGGTTGTGTACAAGGAGTGCAAGCGCAATCACGCGGCATCACTAAACTGTGTTTCCTATGATGGGTGCC AAGAGTTTCTCAAAGAAAATGTTGAGAGTAACACCAGAGATGCTATGTTATGTGCTGTTTGTGGGTGTCACCAAAATTTT CATGTGAAAATTAGGGTGAATGGAGAAACTAAACCTAAGAAGGAGATGATGTCGGTGACGCCGAAGAGGAAAAAGAGAAC GGTTTTCACACCAAACTCGAAGAACCAGATGAAAGAATTTGCTGAAAGGATAGGGTGGAAACTTACAGCGGCTAAAAAGG AGGAAATTGAACATCTTTGCTTGGAGATTGGAATAAGTCTCAAAACATTCTCAGTGTGGTTGAACAATCATCGTCCTCGA GCGATAAAAATGGAAAAAAAAGTGAATGGAAAAGCTAGGGGCAATCGCCGTACATCATCCTTTCCAATCGGCATTTGAGT TTTTTCCTTAACTGGTCTAATGCGATGTTAGTGCAAAAGTTAACTTTTATTTATGAATATGGGTTAGGATTTCCTTCGTC TGCTTCTTGTCTTTTGTGTTTTTTTCCCCGATGTTTATCTTAAATATGTTCTCTATTTTTGAAGTGCCTGGGTTTTTAGT GGTTTACCTTGGATAACTTCAATTTTCGAGTGGATTGTTATCTTTGT 

CDS sequence (LotjaGi3g1v0231900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAGAGGAAACCATGTCTGATACCGAGATCAACTTTCCCCCACCAGGTTTTGAGCAAGAGGTTGTGTACAAGGAGTG CAAGCGCAATCACGCGGCATCACTAAACTGTGTTTCCTATGATGGGTGCCAAGAGTTTCTCAAAGAAAATGTTGAGAGTA ACACCAGAGATGCTATGTTATGTGCTGTTTGTGGGTGTCACCAAAATTTTCATGTGAAAATTAGGGTGAATGGAGAAACT AAACCTAAGAAGGAGATGATGTCGGTGACGCCGAAGAGGAAAAAGAGAACGGTTTTCACACCAAACTCGAAGAACCAGAT GAAAGAATTTGCTGAAAGGATAGGGTGGAAACTTACAGCGGCTAAAAAGGAGGAAATTGAACATCTTTGCTTGGAGATTG GAATAAGTCTCAAAACATTCTCAGTGTGGTTGAACAATCATCGTCCTCGAGCGATAAAAATGGAAAAAAAAGTGAATGGA AAAGCTAGGGGCAATCGCCGTACATCATCCTTTCCAATCGGCATTTGA 

Protein sequence (LotjaGi3g1v0231900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSEETMSDTEINFPPPGFEQEVVYKECKRNHAASLNCVSYDGCQEFLKENVESNTRDAMLCAVCGCHQNFHVKIRVNGET KPKKEMMSVTPKRKKRTVFTPNSKNQMKEFAERIGWKLTAAKKEEIEHLCLEIGISLKTFSVWLNNHRPRAIKMEKKVNG KARGNRRTSSFPIGI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 20 151 132 2.2E-38
PANTHER 20 151 132 2.2E-38
Pfam 22 73 52 1.3E-18
TIGRFAM 24 73 50 7.7E-18
ProSiteProfiles 24 74 51 20.02
Gene3D 77 153 77 5.3E-19
SUPERFAMILY 86 151 66 3.36E-13
ProSiteProfiles 90 154 65 8.989
TIGRFAM 92 148 57 1.0E-19
CDD 93 155 63 0.00115521

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0231900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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