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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0231900 |
Transcript ID | LotjaGi3g1v0231900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Zinc finger homeodomain protein; TAIR: AT5G42780.1 homeobox protein 27; Swiss-Prot: sp|Q9FMY7|ZHD13_ARATH Zinc-finger homeodomain protein 13; TrEMBL-Plants: tr|A0A0L9VGB3|A0A0L9VGB3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0231900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:36452283..36453049) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATTTTCCTTTCATATCATCCATCTTAATGTCAGAGGAAACCATGTCTGATACCGAGATCAACTTTCCCCCACCAGG TTTTGAGCAAGAGGTTGTGTACAAGGAGTGCAAGCGCAATCACGCGGCATCACTAAACTGTGTTTCCTATGATGGGTGCC AAGAGTTTCTCAAAGAAAATGTTGAGAGTAACACCAGAGATGCTATGTTATGTGCTGTTTGTGGGTGTCACCAAAATTTT CATGTGAAAATTAGGGTGAATGGAGAAACTAAACCTAAGAAGGAGATGATGTCGGTGACGCCGAAGAGGAAAAAGAGAAC GGTTTTCACACCAAACTCGAAGAACCAGATGAAAGAATTTGCTGAAAGGATAGGGTGGAAACTTACAGCGGCTAAAAAGG AGGAAATTGAACATCTTTGCTTGGAGATTGGAATAAGTCTCAAAACATTCTCAGTGTGGTTGAACAATCATCGTCCTCGA GCGATAAAAATGGAAAAAAAAGTGAATGGAAAAGCTAGGGGCAATCGCCGTACATCATCCTTTCCAATCGGCATTTGAGT TTTTTCCTTAACTGGTCTAATGCGATGTTAGTGCAAAAGTTAACTTTTATTTATGAATATGGGTTAGGATTTCCTTCGTC TGCTTCTTGTCTTTTGTGTTTTTTTCCCCGATGTTTATCTTAAATATGTTCTCTATTTTTGAAGTGCCTGGGTTTTTAGT GGTTTACCTTGGATAACTTCAATTTTCGAGTGGATTGTTATCTTTGT
CDS sequence (LotjaGi3g1v0231900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGAGGAAACCATGTCTGATACCGAGATCAACTTTCCCCCACCAGGTTTTGAGCAAGAGGTTGTGTACAAGGAGTG CAAGCGCAATCACGCGGCATCACTAAACTGTGTTTCCTATGATGGGTGCCAAGAGTTTCTCAAAGAAAATGTTGAGAGTA ACACCAGAGATGCTATGTTATGTGCTGTTTGTGGGTGTCACCAAAATTTTCATGTGAAAATTAGGGTGAATGGAGAAACT AAACCTAAGAAGGAGATGATGTCGGTGACGCCGAAGAGGAAAAAGAGAACGGTTTTCACACCAAACTCGAAGAACCAGAT GAAAGAATTTGCTGAAAGGATAGGGTGGAAACTTACAGCGGCTAAAAAGGAGGAAATTGAACATCTTTGCTTGGAGATTG GAATAAGTCTCAAAACATTCTCAGTGTGGTTGAACAATCATCGTCCTCGAGCGATAAAAATGGAAAAAAAAGTGAATGGA AAAGCTAGGGGCAATCGCCGTACATCATCCTTTCCAATCGGCATTTGA
Protein sequence (LotjaGi3g1v0231900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSEETMSDTEINFPPPGFEQEVVYKECKRNHAASLNCVSYDGCQEFLKENVESNTRDAMLCAVCGCHQNFHVKIRVNGET KPKKEMMSVTPKRKKRTVFTPNSKNQMKEFAERIGWKLTAAKKEEIEHLCLEIGISLKTFSVWLNNHRPRAIKMEKKVNG KARGNRRTSSFPIGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 20 | 151 | 132 | 2.2E-38 | – | |
PANTHER | 20 | 151 | 132 | 2.2E-38 | – | |
Pfam | 22 | 73 | 52 | 1.3E-18 | ||
TIGRFAM | 24 | 73 | 50 | 7.7E-18 | ||
ProSiteProfiles | 24 | 74 | 51 | 20.02 | ||
Gene3D | 77 | 153 | 77 | 5.3E-19 | – | |
SUPERFAMILY | 86 | 151 | 66 | 3.36E-13 | ||
ProSiteProfiles | 90 | 154 | 65 | 8.989 | ||
TIGRFAM | 92 | 148 | 57 | 1.0E-19 | ||
CDD | 93 | 155 | 63 | 0.00115521 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0231900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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