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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0232500 |
| Transcript ID | LotjaGi3g1v0232500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA replication complex GINS protein SLD5; TAIR: AT5G49010.1 DNA replication protein-like protein; Swiss-Prot: sp|Q99LZ3|SLD5_MOUSE DNA replication complex GINS protein SLD5; TrEMBL-Plants: tr|I3SQA1|I3SQA1_MEDTR DNA replication complex GINS protein SLD5; Found in the gene: LotjaGi3g1v0232500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:36680572..36684292) extracted from Lotus japonicus Gifu genome v1.2.
AGAGTGGGGAGGGTGGGGTGGGAGTTTAGAAGTTGAAAGGGGAGGGGTATTATGGGGTTTTGGAAATTTAGTGAGGAGGC GGGAAATTTAATTCCCAAAAAGAAACAGCTTCTGTATAAGAGAAACAAAAAAATAAAAAAACAAATTGCGTCACCACCAT CATCTCCCTTTCACAACCCAAATCGCACCACCTCCTTTCTCCTCCGCAACCGCGCCGCCACCGCAGCTCACTCCTCCACC CGATTTGAGGTTGCTGTTGCTGTTGCTGCTACCGCCGCGCCGCTCCTCCTCACGCGAAGCCCAGATCCACCTCTACGCCG TCGTTCCTGGCGCCGCCATCCTCTTTTCCGGTCCCAGCGCCACCGCCAGATTTCGGTACCAGCACCAGCTACGGTGCCAC AGTGTCTTCATTCTCAATTGTGATCAATGGATTCGAACTCTGTGGAAGGAGGACCAACGGTTCTCACTGACGATTATGAT GCCTTGATTTCAACCACCGATTTTGAACTGCTCAAGCGAGCTTGGCGTAGTGAGAAGGCAGCCCCTGAGATTCTTCGATT TGAATCTGATTTGATCAACCGTGTCAGAGAACAGATTCAATTGATGGTAGCTTTTCAAACACTCAAAACCCCAACTTGAA ATGAATTTGAGTCTTGTTATCATAACCTGTATATAATGCTCAATTTTTTCATCAACTGAAAGAAATTAGAATGAGACTAA TCTGTATTCTAGTGGGTTTTCATTTATGAGATGTATGGGATTAGTATTCTGAACAGGAGTATTATGCTATTTTTCTGAAG AAAAATAGATATTTTGTTCCTTGCTGATGTGACTGCATTAAGTTCATGTACCTTTACAGTCCTGTGATTTGTGAACACTT TTTTCTCCTAATTCGATTATTTGATTTTTTTCGCAGGAAGATACTGTTGAGGAGAAAGGCGCTGCTGGAGCTGACCCTCA TTCGTTATCTTTGTATCAGATGGACATTGATAGAACCCTGTTTCTATTAAGATCATATCTTCGCATCCGCATCCAGAAGG TAGCTAGCCATTTGGTAGCTTTTAGCTTTATGCTCAAGGAAATAGAATTATCGTGGGTGTTAAGTCAAACCTGTCTCATT CAGTAGGAACTAAGAAAAATGAACCATTAAAGTTTATTGTATCCTTAACCTCAAGGGTTAGAGTGGATGCATTTGCATTA TTGTTTAGCTTGATATAAATTAATTTTTCCGTGTAGACTTTCTTTCGGAAGACATTTCTCCCTAAATACTATTGCCCCCT TTCTAACGTTTCTACAGCCTTCATTTCTACCTACCTATGTAATATGTTTTAAAATAAGAGTAAACCTTTAAATTGTTCTT TCAAAGTTACATATGTGATGACATTAGTCCTCTGAAAATTTGGTTACCAAATTATTCCCTATTAAAGTTTGATGTTATTA GTCTTTACAAAAATGTTACCAAATTAGTCCTTTAATGCTTTAATTCATCAATTCATCTTTTTTATGCTGCCACTTTAATT GTTCATGAGGACAAATGTGGTGTCAGTTTAGATGAGACTAACATGGTGATAAAACTTCTAAAAGACTAATTGGTGATGTT TAAGATATTTGATAGACTGAAGTGGTGATCAATTTTTTTGGAGGACTGATTGTGGTGACTGGTGTAACTTTGCAGGACCA ACTTAAGGGTTTTCTTTTAAAAATAGTTAGGGTGGTACATTTTAGTTGCTAAAGTATTTGAAGATTAGTTATGCTTTGAA TATACTGGATCAATTTCTGTATTCATTAGATTGAGTTATGGCTAATTTCATGAGCATGTTTTTATTGTAGATTGAAAAGT ACATGTTCCACATCCAAAAAACTGATGAACTTTGGAACAGGCTATCTACTGAAGAGAAAAATTTCACTAGAAGGTAATGC TATCCTTTACTTTTTTTTCTGACTACCAATGTGTATTAACTTATAGCTGTATAGCATAATAGAATTCTAGTTTTGGTGTT CTGAATCTAGTTTGATGGTTGCAGGTGTACAGATGACCTAAAACAGCACTTAGAGGAGAGTGTTCTATCTAAATTGCCTG AAAATTATCAGTCTGTTCAAAAGCAATCTGTAATTAGTGAAGAGGATGACATGGGTAATTTTCCATCTTTAGAATTCAAT TTGGGTTATGTTATTGCATTAGCTCTTCTGGACTCTTTTATACCTGTTTAGGTATTTGACTTTGCTTTACCTAAAAACTA TCAGGCTGTTGTGAGATAAAGTTTCTTGGTAGCACATTGGTAAGTTATATGAAATTTTTTGCAATTATTGGATCAAGAAC ATCAAACTCAGTCTGAGGATCAGTTTTGCAGTACCATTTCGATAAATTATGACCTTTATGCTTGGAGTATTTTTGCTAAT TTCTAGCTATATGGATGAGATCCTGGATGCTAATCTTCACATATTTTACTGGAAGTTGTTTTGACGTGCATCATACCTCT GGTAGTGCTCATTCCATGACCAAATTAGATGGCTAATAATTGTGTCATAATACTTTATGCTGATGGCTATAATGATATTT TTATATCCCTATAAATACTAAATGACCTTGTAGCTTCTCTTTCTTTCGAATATTCCAATAGCGAATACCAAAAGGCACAT TAACCTTGCTCAAGTTTATCTCTGGTCTAGTTGGATTGCTTTCTTAATCAATTCTCTAATATATGTTATTTCCTTCAGAC TAGGATGTCTGCTGACATGAACAATCCTTGTTCTCAGACAATTATTTTGTTTGCCTGTTTCAGTCCCAGAACCACAGCAA GACACATTTGTTTTATGTAGAAGTAAAGAATATCTCACAGGCATTCAACTTGAAGATGGACCAGTTGATGACAGGTAATT TTCTTTTTTCTCGTATGAATTTGTTCTGCTCTGTGGAAGATGGTAAAGAAGCAGTTTAATTGATTGTTCTGGCAGGTCGA AGCTCTTTGAGATGGAGGCTGGTGTCCTCTACTTCATATGTTACAAATCAATAAAGGCACTTGTAGAGAGTGGCAAAATT GATCTACTTTGATAAGTTAACAAGTTGGGTATTGATGATCATGTGATTTCTGCTATTGTTCATCAATTGTCACCTTCCAA GGCGTATTCTTGCTCCTAACAATGTTTTTTCCCCCCTCAACTCGTGTATGAAGCTGACAGAAGATTCATTCATGGTGGAA AGCACGAAGATCAACTGTGTTGATGTCTTGTTAAGTGTTTGTTTTCACTATTGTGTTTGTTTACGGTTGTGTTTTCTTTT AGTATTTTACTATGCTACTTTTCTTTAAATGATTTTATTATCCTACTTAACCATACATAGGTAAACAAATAACTAGGTTT TTTTTTTTGGTTAGATTGTTCTCACAATTTCAAACCGGATAGAACCATTATGGGTGGCAAAAACTTTCATGTTAAGTATT TAACACAACTGCATCTACATGGATACTTCCTCTTTCAAACTACGCTGACCGCCAATAATACCAATGGGTACCTATAAACT TAATATGAAAACTCATCTTTACAACTAAACTAATGCTTTTTTCTAGCTTATGTATTTATCTTTTGAAAATTTCCATTATT TGTATACTAATATTTGAATCCGTGTCATGCACGACTTGAATATAAAAAACATGAGTTTATAATAAAAAGATAAATTGAAC ATACATGTATGTCATACAAATTATTAAGTTTTAATCAAATT
CDS sequence (LotjaGi3g1v0232500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCGAACTCTGTGGAAGGAGGACCAACGGTTCTCACTGACGATTATGATGCCTTGATTTCAACCACCGATTTTGA ACTGCTCAAGCGAGCTTGGCGTAGTGAGAAGGCAGCCCCTGAGATTCTTCGATTTGAATCTGATTTGATCAACCGTGTCA GAGAACAGATTCAATTGATGGAAGATACTGTTGAGGAGAAAGGCGCTGCTGGAGCTGACCCTCATTCGTTATCTTTGTAT CAGATGGACATTGATAGAACCCTGTTTCTATTAAGATCATATCTTCGCATCCGCATCCAGAAGATTGAAAAGTACATGTT CCACATCCAAAAAACTGATGAACTTTGGAACAGGCTATCTACTGAAGAGAAAAATTTCACTAGAAGGTGTACAGATGACC TAAAACAGCACTTAGAGGAGAGTGTTCTATCTAAATTGCCTGAAAATTATCAGTCTGTTCAAAAGCAATCTGTAATTAGT GAAGAGGATGACATGGTCCCAGAACCACAGCAAGACACATTTGTTTTATGTAGAAGTAAAGAATATCTCACAGGCATTCA ACTTGAAGATGGACCAGTTGATGACAGGTCGAAGCTCTTTGAGATGGAGGCTGGTGTCCTCTACTTCATATGTTACAAAT CAATAAAGGCACTTGTAGAGAGTGGCAAAATTGATCTACTTTGA
Protein sequence (LotjaGi3g1v0232500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSNSVEGGPTVLTDDYDALISTTDFELLKRAWRSEKAAPEILRFESDLINRVREQIQLMEDTVEEKGAAGADPHSLSLY QMDIDRTLFLLRSYLRIRIQKIEKYMFHIQKTDELWNRLSTEEKNFTRRCTDDLKQHLEESVLSKLPENYQSVQKQSVIS EEDDMVPEPQQDTFVLCRSKEYLTGIQLEDGPVDDRSKLFEMEAGVLYFICYKSIKALVESGKIDLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 227 | 227 | 7.4E-55 | ||
| Gene3D | 14 | 217 | 204 | 3.5E-54 | – | |
| PANTHER | 14 | 227 | 214 | 4.5E-70 | ||
| SUPERFAMILY | 22 | 157 | 136 | 7.06E-39 | ||
| CDD | 25 | 143 | 119 | 1.50578E-42 | ||
| Pfam | 65 | 124 | 60 | 1.0E-4 | ||
| Pfam | 169 | 227 | 59 | 1.1E-13 | ||
| SUPERFAMILY | 171 | 227 | 57 | 5.04E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA-dependent DNA replication | A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. |
Expression pattern of LotjaGi3g1v0232500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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