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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0236900 |
| Transcript ID | LotjaGi3g1v0236900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein translation factor SUI1; TAIR: AT4G27130.1 Translation initiation factor SUI1 family protein; Swiss-Prot: sp|O48650|SUI1_SALBA Protein translation factor SUI1 homolog; TrEMBL-Plants: tr|I3S4C1|I3S4C1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0236900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:37960298..37964254) extracted from Lotus japonicus Gifu genome v1.2.
CCCTTTCCCACGCGTAGAGAATAGAGATCCATCTTCACACGTGACGCTTATGTCAATATTTCATTACAACTGGACTTTAC CCAACCCCACCTTACGTTTCTTTATATATTTTCTTCTTCCAAAGTCACTTTTTTCCTTAACTTTTTCTCTCCACCCAAAC GAAGCGTTTCGCAGAAGGTTCTTCCTTATCCATTTTTAGGGTTCCAATTCTCCATCGAAACCCTTAATCAGGATCAGGTA ACGTCCAATTCTTGTTCCGTTTTGTTTTCTTTATCATAGATCTATTTTCTCCAACCGTCAATTTTAGGGTTTGGCTTGAT TTCTTTCGTGGTAATTGTCGTCTGAATTCGATTGATTTTGAGGGTTTTATTCTGTTTCGATTGGATTTTGGTGAAAATCT TGTATTTTCTGTGACTTGGGATGTTACTTTTATCCTTTGCGATGACTCGATATGCCTTTCACAGATATATCTGATTCTTG TTTATTTAAAGGAATATTCAATTTGTTCATTGAATTTTCTTATTGAATTTGTTTTGCCAGATTTTGAATCATTTGATTTT ATTAGATTTGCTGTTTCTCTAAACATGAGTTTTTTTTGTTACTAAGATCAGTTTGTGATCGGTCAGGGTACTGAGGTAGT ATGTTTTGTTTATCAGTGCTGATAGATATATTGTTGTTGACAATGATTTTGATGCTGTATTATTCTGGAGTTTGGAGTCA TAGTAATTCACTAACATTTTCATTCTGAATCCAGGTCTGAATAGTTTGTTTGGTTGGATCTTCTGCTTCGGAGAGCCAAA TTTCATGTCTGAACTAGACGCAGCTATTCCTACTGCCTTTGGTATGTTTTAACTTCTTAACAGGTGTTGTCTGTGGATTA ATTGTCTTATTCATGATATGCTATCACTCATGATGGGATGAACAAAAGTATGGTTGGGTTCTTTGGGAATGTTGTCTCTG AATAATAACATAGCATGTCTTTTATTTGAATATTTCCTCAAAAAGAATTCTACTGTACTATCTACGCTTGCTGAGTAACT TATGATTGATTATCTTGAGATTTCAATGTTTACACTGAACTTACATGGTACTATGCTCATTTATGTTAAAATCTGGATGT TACTCTGGAAAGAGGGATGCTATTTCTTACAAAAGTAGTAATGACACAGTCCAAGAATTAGTTTTATTAGTTTTAAAATT GAAAAACTCACTTGCCACGTGTGACTTGTTGAATTTAAAACCACATCATCCCTGTGTTTTATAACACTTCTTGCATTTCA TGGGTCACATCATTCATAACAATAAGTAATTGTTCTCTGGAAATGTAATTGTTAACTGATTTTGCTCTGTTTTATTGCCT GGACATGAAATTTGACCTTCTTTTTAAGTTGTAACTATTACCAGAGGGTTGTTATTATTATTATTGTTATCATTATTTTG AGTAATACCATTATCAATTGATTACATTCCGTGGTTGAACCAGATGCAGAAGTTTTGGCAAGACTTGTAGAGAACTTTTC TCTGTAATAGAAATTTGTTTTTTAGCTGGTTTAAGGTGGTATTATGTTGAGCTTTTAATGTGTTGATAGTTAATACCTTT GGGTTTTCACAATTTGTGAAGGTTATGTGAAATTGATGCTCACAGCTTTGCACATCCTTTAATTTGTGGGACATTTGATT ACTATGATTACAATAATCTGGTTTAACAATTAAATAATCTTAATGATATGTGAATGCTGTGTGGTTGTTTCAACAATCTT TAGATCCTTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGGTCATCAAAGGAGTACGTGCATATTCGTATACAACAG CGGAATGGTAGGAAAAGTTTGACAACTGTCCAAGGATTGAAGAAGGAGTTCAGCTATAACAAGATTCTTAAAGACCTTAA GAAGGAGTTCTGCTGCAATGGTACAGTTGTTCAGGATCCAGAACTAGGACAGGTGTGTTGGCATCCTCTTTTTAAGACAA TGATCACCTACCCCTTGTTACTTCAAATAACATTTTTGTTTGTTTAGGTTATTCAACTTCAAGGTGATCAAAGGAAGAAT GTATCTACCTTCCTAGTCCAGGTAATTACCACCCTCATCTTCAGAGTTATGCAGTTACTTGTTGGTTTGCTTTCTGAATT GTTTGATCCCTTTAAATTTTCTTCTATCCTGAGCCCCATGGGTATGACATATGAATGGTTTACTTACCCTGCACTTTATG TTGCTGTTTTTGTTTATGGAATCTTCATTGTTGTAATATGCATGAGTGGTTGTCTGAGAATCAATTTGTTATTTTGCATT TGGTTTATGCCAGTCCTCCTTCTGCTGTTTCCTCAGTTTTGGGAATGATCCACTAATGCAGTTGGATGTGTTTTCAAAAA ATCCTGAGTGAGTTATATGTTGTTGCAGTTGTAATCTTTGCTATGGTCAGTTATTTGAGAAGCATGTTGGCCTTTAAAAA GTGATGCTTTTTCTAAGAGTTGGAAAATGGATTTTTGATTGGACTGGGCAAGTTTAAAAAGTGTATGAGTTATATAATTT ATGCCCCTAGATTGAGCACTGATTTAAGCTGGAATTGAGCAAGTCATAGTTGGGTCTGGTCGTTGTCTTATATTCTTTAA TTGATAGCATCTCATACTTGTGCCTTGTATGACAAATAAACATTATGTATGCCTTTCATTGTATTGACATTTGAATTATA TATCTGGAAGTTTGTTATGGAAGATCTTGCCTTCAAATTATAGGATGGAGACAATTTTTTTTTATTCAATTTCCCCCCCA CTTGTGGACATGAACAGGCTGGTATCGTGAAGAAGGAGCATATTAAGATTCATGGTTTCTGAGCTGCTGGGAACAAAAGA GTTAAGTGGTATCTAGCTCACTTCGAGTTGAGCATATATGTGATTGTGGTATTTCTTGTGTTCTGGTTTTAACATTTGTA ATGTGGGATATGACATTATGTGCTATCTCCTGCAATAACATGTATCAAAGCACTTTGTCAGAGTTAAATACAACTTCATT TCGCTTATCAAGTACTTTAATGCATTACTCTAGTGTGCATGACTTTTTGGATTTGATTCCTCCACGACGAGGAATTCACT TTAAGGGAATAATAAGAAATTGTAGGTATTGGTTGGAAATTTATCGGTGAGATTTAACTTATCAAATAGCTTGTTATAAC TATACACAGACACACATAAGATCATAGTTTTAGTTTCTGATTTTCGTTGAGTAATTATAACTTCACACTATTGGTTTTAC GTAAAATTTCCACCTAGGTAGATAAACCAGGATTTTTTCTTATGCTAGCTTCAATATACCCATTTCGAATTGAGTTGATG GATGTATCAATATTGTTTGTTACTTATGCACCTTTTTTTGACGTTTTGGGAAATGCTAAATTTCATTAATAATGCACCAG AGGTGCCAAACTGTACAGGAAAATAAAACCACAATAGGCAATGAAAGAAAGAAAAGACCCCAACAAGGGATTAGAAGGAT CCCCCCAAATTTCCTACACAGCGGTACCCAATTATCCATGGTTTATAATTGTCTGAGACATTCTCCTGGGTCATTGACCC ATTCGAAAAAAGAGTTGCAAAACTCTTTCACAAGCACTGATAACCAGCTAAAGGAACGACGTATCATGACAACTACGGAC TCCACATCAGCTTGATCTCCGCGAAAGGTTGCTTCAAATTGACCAAATTGTAGAGCACCAAACAGCCCAAGCACCTGCCC TCTGTCTAGAGTTCGAAAAACCATTTGTGTGCTGCAAAAAATGGGACTTGCTATCCACAAACGAGTCAAGTGTCGATCCC AACCAAGTGTAACAGACATTCCATACAGATGAGGAGAATGGACAAGAGAAGAATAGATGGAACAAATTCTCCTCTTCCAA GGCGAAAAAAGAACACAAAACAGCAACCCCTCTAATG
CDS sequence (LotjaGi3g1v0236900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGAACTAGACGCAGCTATTCCTACTGCCTTTGATCCTTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGGTC ATCAAAGGAGTACGTGCATATTCGTATACAACAGCGGAATGGTAGGAAAAGTTTGACAACTGTCCAAGGATTGAAGAAGG AGTTCAGCTATAACAAGATTCTTAAAGACCTTAAGAAGGAGTTCTGCTGCAATGGTACAGTTGTTCAGGATCCAGAACTA GGACAGGTTATTCAACTTCAAGGTGATCAAAGGAAGAATGTATCTACCTTCCTAGTCCAGGCTGGTATCGTGAAGAAGGA GCATATTAAGATTCATGGTTTCTGA
Protein sequence (LotjaGi3g1v0236900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSELDAAIPTAFDPFAEANAEDSGAGSSKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEL GQVIQLQGDQRKNVSTFLVQAGIVKKEHIKIHGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 113 | 113 | 1.1E-77 | – | |
| PANTHER | 1 | 113 | 113 | 1.1E-77 | – | |
| PIRSF | 1 | 114 | 114 | 1.5E-50 | ||
| Gene3D | 2 | 114 | 113 | 2.1E-48 | – | |
| SUPERFAMILY | 5 | 114 | 110 | 8.89E-34 | ||
| TIGRFAM | 9 | 114 | 106 | 5.4E-56 | ||
| Pfam | 29 | 103 | 75 | 3.2E-26 | ||
| CDD | 30 | 113 | 84 | 9.13346E-52 | ||
| ProSiteProfiles | 32 | 102 | 71 | 24.55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi3g1v0236900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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