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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0240200 |
| Transcript ID | LotjaGi3g1v0240200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Multiprotein-bridging factor, putative; TAIR: AT2G42680.1 multiprotein bridging factor 1A; Swiss-Prot: sp|Q9SJI8|MBF1A_ARATH Multiprotein-bridging factor 1a; TrEMBL-Plants: tr|I3T5E9|I3T5E9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0240200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:38849616..38852979) extracted from Lotus japonicus Gifu genome v1.2.
GTTGAACAACCCAAAGCCCAAACGTGAAAAGGATAGGGACTCCCTCAGCGTGATCACCAAGCTAAGAAGATCAACATTCA TTCATTCATTTCTCTTCTAACGAAAACCCTAGACCCAAACAACAAGAAGAAGAAGAAGAAAGTACTCACCAACACAGAAG AGAAAAGATGTCAGGAGCAGGAGGACCCGTTTCACAGGACTGGGAACCCGTTGTCCTCCGCAAGAAGGCTCCCACCGCCG CTGCCAGGAAAGATGACAAGGCTGTCAACGCCGCTCGCCGCGCCGGAGCTGACATCGAAACCGTCAGGAAACGTTAGACC CTTCCCCTTCCTCATCTTGAGATCTGTAACCCTAGATTTACTTTGATTTCGATTGTTTCATTCCACGTGAAATTTGTTGT TACTTTTCTTATCTTAATCTATATATGTATACAAATAGAATGATTGATTTGTTCATGGAGCTTTGTTGTGATTCTTGATT AGAATTTTGGTTCAGCAGCTGATAGTCATGGTTTTTATTATTTATCCAGACTATGGAGCTTTCATTTCTATTGTTGATTA TTGATTATTATCATCAGTCGATATTATCTGTTTAAATTTGATTTGGGACTATGGGTTATGGGATTCAGACTTCTTTTTAC TACAAATGATTGTGCGTTTTAAGTGGTTTTCGCAATTTCAGAAGTGGTATTTTCTTCTGGGTTGATCTTTAGGGTTGTTT GGATAGATTTTTCAGAGTTTATTTAAGGATATAACTACATGTGAATCGGTGTTAGTTAAACTTTTGAAAATATTTACAAG AAGCTTACAAGGTCTTTGGAACTTCAGCTCATGAACTAGCTTTTTTGACTCAAGTTGTCATGTAATTCGTGTTTGTTGAA TTATCACTTAATTGAGCTGATGCCCTTATTCTGGGATACTTATTTCGTATAGGGTGGTTGAATGTTTCCACTCTTTCATC TTGATTGGCTTCTTTTTATTTGGCTGGTCGTATTGCTGATTGTTAAGTTGTTCTGTGCAGATAATGCTGGGACAAACAAA GCTGCTTCAAGTGGCACTTCACTGAACACTAAGAGGCTGGATGAGGATACAGAGAATTTAACTCGTGAGTGTGCTTATAT ACAATCAACTGTTTCATGATTTTACATTTTCTGCCATGGAAAGAACCTAATTGCATTTATTTAGTGGATTCAACAGTAAA TTATTTGTTTGGGCAGTTTTTGGTTGGTGGTATGCTAGCTCATACCTTCAATGCTGGAATTCAACAGTAAATTATTTGTT TGGGCAGTTTTTGGTTGGTGGTATGCTAGCTCATACCTTCAATGCTGGAATTATATTTCTGATGTTTCCCTGAATAGATT AGCTATGTACTTGGTTGAACTGTTGAGGCACTTTAGTTGAGAGCTGGCAGTATCACTTCATCACTATCAGGCTTACATGT AAATGTACTCTCTACCCTAGTACCACTAGGTGCTAACTTCTGGTATATCATAAGCACGTGTTTTAGAAGTGTTACATAAA TAATGGGGGACATTCATATTATGTTACTAGCTTGGGCTTACTGTGGTTATTATAACTTGTAGTTTTCTGGAATATTCTTT TATTAGCTTGGGGTTATTTTGCTAGATTTAGGAATTTTGTGAGTGATATAAGTTATAACTACTACATAATTTCTGGGAAT TTCATATTCTTTTATTAGCTTGGGTTTACTGTAGATATCTGTACTATTTTTTTTTTTGTTTGTTTTCATCTATCGAACCT GTTATACAAATTTATGCTTTTTCCTTCTAAGCACAATGCAAAAAATGTCTGCATAGCTTGGGCATGGCAATGCAAATGTA CTATGTTCTAGTGTGGTTCAATTTCTGATAATTGGTGGAAATGAGGATATACTCATAATTTATGTCTTTTGTGATATTAG TCCCCCACTAGCAACTATTTTCTTTGAATTTGATAACTATCATATGGCCTGATATTTTCTTAGAAGTTAAATGGTAATGT CATCTTAGCACTGTGATTATAAAACTGACTCCTCATCTACAATGTGCTATCTGTTTTCTTCTATTTACCTGGTGATCAGC AATCAAAGCCTATTATTATTGTTGTTGTTGTATCCGTTGTTGTTTCTCTTGGATCTATGAGTGTCAAACATGGTTGAACT GAATAACACATTATTCAATTTGGAACACTGCTGTAATATGTGGTGGTTTTTTTGTTGTTGGTCCTGCCTTGTTTTATTCT TTGAACATTAACTCTTGTGTGCTAACTGAACTCAACTTGTGTGCACAGATGATCGTGTGCCAACTGAACTCAAGAAAGCT ATAATGCAAGCCCGGATGGATAAGAAATTAACTCAGGCTCAACTTGCTCAGGTATTGCTAACCCCTTCTCTCTAACATAT TTTGTGTCTATGTTCATTGTCTGTAATTTGTGATTGCAGTCATGATTGCATGCATATATTTTGTGTCTTCATGTTCATTA TTTGTAATCTGGTATTGTTGATAACAAGCTTGATTGCTTGTAGATAATCAATGAGAAGCCTCAAGTGATCCAGGAGTATG AGTCAGGGAAAGCGATTCCAAACCAGCAGATTATTGGCAAATTGGAGAGAGCCCTTGGTGCCAAACTGCGTGGCAAGAAA TGAGGAACCAAATCTGATGGCTGTTTATGTAGTCAGTTTTTTATCTCGCTGTCCAAGATGGTTGCGTTTGCATGTTGCAA CCGGAGGCTTTAACATGTTCAGACATAATGATGTATTTACTAAATATTACCATACGAAACACAAGCTGTGGTAACTATCA CCGACTACCTTCCATCCATGTCTGTTAAATAACAAAGTTAGCTTTGTCACAGATTAGCGTATTTTAATGCATTTCTTGCA AATTTCCTACATATAGCATATTGTTTTTTTGTAAATAAAGATGTGTTTTCAGCATAAATTATTGACATAAAAATTTGGAA AGCTTTACTGGGAGATGATGCTGTTTAGACCATGATTTAGTGTTTGATTAAAAGTTGAAAGAAAGCAAAAATACATTCTC TCCATCCATCTGTTTAGTTCTATTGGGTTAAAGGATGAGTTAGAACTTAGAACATATAACATGGAATCAAAAGAATGCGA CAGAGACGATGGGGTGAATTAATTCCATTGCTCGTGTTCTGGAACTATTGGTTAAATATTGTCAAATATGCATCCAAAAC TAGCAATTCTGATTGTTGAGTTCAAAATTCAGGAGTCAAGGGCTCGAGGAATGGTGAATGCTGCAGTACAATACTGATAT AGGTTGTCTTGAAGTTGAACTACGGGTTCATTTGTAAGAATTATGATTCATTCAAGCTTTTGCTTCATTTACACCTCACT CACC
CDS sequence (LotjaGi3g1v0240200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGAGCAGGAGGACCCGTTTCACAGGACTGGGAACCCGTTGTCCTCCGCAAGAAGGCTCCCACCGCCGCTGCCAG GAAAGATGACAAGGCTGTCAACGCCGCTCGCCGCGCCGGAGCTGACATCGAAACCGTCAGGAAACATAATGCTGGGACAA ACAAAGCTGCTTCAAGTGGCACTTCACTGAACACTAAGAGGCTGGATGAGGATACAGAGAATTTAACTCATGATCGTGTG CCAACTGAACTCAAGAAAGCTATAATGCAAGCCCGGATGGATAAGAAATTAACTCAGGCTCAACTTGCTCAGATAATCAA TGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAAGCGATTCCAAACCAGCAGATTATTGGCAAATTGGAGAGAG CCCTTGGTGCCAAACTGCGTGGCAAGAAATGA
Protein sequence (LotjaGi3g1v0240200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGAGGPVSQDWEPVVLRKKAPTAAARKDDKAVNAARRAGADIETVRKHNAGTNKAASSGTSLNTKRLDEDTENLTHDRV PTELKKAIMQARMDKKLTQAQLAQIINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 6 | 143 | 138 | 5.2E-83 | – | |
| PANTHER | 6 | 143 | 138 | 5.2E-83 | – | |
| Pfam | 10 | 80 | 71 | 3.8E-22 | ||
| MobiDBLite | 47 | 75 | 29 | - | – | |
| MobiDBLite | 51 | 65 | 15 | - | – | |
| Gene3D | 72 | 143 | 72 | 2.8E-30 | ||
| SUPERFAMILY | 81 | 139 | 59 | 1.15E-12 | ||
| CDD | 86 | 136 | 51 | 1.24866E-9 | ||
| SMART | 87 | 142 | 56 | 5.0E-11 | ||
| ProSiteProfiles | 88 | 142 | 55 | 12.355 | ||
| Pfam | 88 | 138 | 51 | 5.5E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0240200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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