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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0247100 |
| Transcript ID | LotjaGi3g1v0247100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT2G42570.1 TRICHOME BIREFRINGENCE-LIKE 39; Swiss-Prot: sp|Q9SIN2|TBL39_ARATH Protein trichome birefringence-like 39; TrEMBL-Plants: tr|I3SJ39|I3SJ39_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0247100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:40688802..40693263) extracted from Lotus japonicus Gifu genome v1.2.
GTACATTTTCAGTTCTGTCTTTCTTGGTGGGTAAAGTGTTGCCATTATTTTTGAATCACAAATTCACAACCTTCATCTTT CCATTGCCAAGAATTTTTAAAGCAGGGAATGCATCCAACATCACGAGATTCCAATGTTAAAAACAAAGGATCCATTCAAA GTTTCACTGCATCTTCAACCAAAATAAAATATTCAAAAGAGAAAAACAAAAAGAAACACAAGTTGTTCTGTTTTCACTTT CCATGTGGGGTTGTTGTGTAACCCCTCTCAATCTTTCTCTCTCTGCAGAGTGCAGACACTCTCATATGCACATTATTATA TAACACCATGATTAGGGAACACCTTTTTCTTCACTCCTCGTGCTTTCTTCCTTCAACCAAATATCAGGGAGGGATCAGAA CCCAAGAGAAATGGAATCCATAATGTTACATGCTCTGTTCCTGACTCTGTTTCTGTTTTCCCACCAGACAAAAGCAGAGG AATTTGAATCCTTCAGTAATGCCACCAGTTCCAGAGCTAGGAGCCTCGCAGGAACATGTAACTGGTTCCAGGGGAAGTGG GTTTACGATGCTTCATATCCTCTCTATGATCCTTCTTCATGCCCATTCATAGATCAACAGTTCAATTGTCAAAAGCACGG TCGCAAAGATAAACTTTACCAGAAGTATAGGTGGACACCATTTTCTTGTAGTTTGCCAAGGTACTTACTTCCTCTATTTC TATGCACACTTTTTTGCTATGTCATTTTCGTGTTTGGTTCTGCGGTTAGAAGTCTATAATCACTTCGGGAAAGAAGCTTA AAAGTGCATGTTTGGAAAGTTAGAATCAATTATGAAGAGGAGTTTATAGGAGTAGATTGTGAGTTTCAGAATTGATTATG AGAAAATGTAAACCGATTAAAGTGAGGCTTAGCTTAGTGCATTTTAGATATACGTAAATAACCATAGTGACTCTACGTAA ATAACCATAGTGACTCCAAATGACAATGGACAAAAGTAACATTCCTTAACTTTTGTGGTTGTTCACCAGATTTCGACTTC ACTGTGGTTTTTCATCCTAAACATGCACTTAATAATGTGTTTGAGATTGTTTGTGTTGGTTTGGCAATGGCTAACTGGGG CTATGAAATTGTTCTGCAGGTTCAATGGATTGAGCTTCTTGAACAGAAATAGAGGGAAGAAGATAATGTTTGTCGGTGAT TCCTTAAGCTTAAACCAGTTCAACTCATTAGCATGTATGCTTCATGCTTGGGTACCAAAATCCAGGGCCACATTCGCACA GAGGGATGCTCTCTCCTCAGTGAAATTTGAGGTAGGTTCTACATTCTCATCCTCTTTTGCCCGCTCAATGTTTAGAGAAC TTTTGCAAACAAATATATTACGTGTTTGGATCCATGGTGAAAAATTACACTAAACCAAAGTCATGTAGATATAGCACCTT CTTTTAGCTTTTAGGTTGTCCACGTGATTTTTCCTCTTATTGTATAGTGTAAGAATTTTTTTTTTCTTGTTTTTAGTTAG GGTTGGCTATGTAAGTCATGTCATTTTCTCTTTTGCTTTCATGTGTGTACTCAAATCGAAAGCTCTTGGTCATTTTCACA TTTGAACATATATGGGTTTGTCTACCCTCAAATATAATTTAATTGGGTATATGATAAGCCTTGAGCTTATAAGCACTGAA ATATGAGTGATAAAGGTGGGATTTGGGAGGTTTTCCTTTTTGCTGGGGCCATTTCTTTCTGATTACCAATTTAAGAGATA ATAAATGTTTGTCTTAATGTACTTTACTCAAACTGTTCTATTACTCTTTTAGTTCTACCAAATTCATATGTGCACATAAT TTTCTCAACTAGATCATGAAAGAGAAATACCATAGTACTTTCTTCTGAAATTTGATTACTATACTTAATTAGTCAGTAGA CCAGACGTGGAGTTTCAGGTGCCACAGATTCATTTATGGTGGAAAAGGGAAACCTTTTTTCTTACTCCATGTTCATAACT AGCTCAAACTACATTATAGAACTTTTATTTTACTCCACTATCTCACTCTCTAGTCTCTCCCACCAGAAAATCTGATTACA TTCTTAATTATGTTTGTTTATGATATAAGTTTCCATAATGCTATTTGTATAATGTTGTTACTTAGCTTGTAGCCTCATAA ATTCATAATTGCATGTGGGTTGGTTAAGTTCAAAATGAAAAAAAAAAATTGAAAGCTAAGCAAGAGCAATTGAATCTACT TGTTGTAACTATAACAGTCCTTTAAAAAAATGAAAAAACTATAACAGTAACATTAAACACTAGCCTAATAAATATCTTTT AAGGTGACATTTTAATAGGTAATTTAGTCCTTCATGACTTTTCAAAATTTCAAAATGGACCACAAGTTGTGTTCTGCACA TGTTCTGCACATACACTGTTCAATGCTGCTTCCACTTTTAAATTTAATCCATAAATTCAGTGAACTTTGGACCACGTCTT TGGTGAAGGAGGACTTTGCTTTACCTTATTATATATCATTTCTCTGTTTTGAAAAAAAAATTGAGAATCAGATTCAATAC TAGCCCAAGGTAAAGTAACATGGTGATAATACATTTTAGGAAAAGGAATTTTTCTTTCTTTCTATACAATGATATGATAG AATGTTGATTATCAGTTATCACTATCCCAAATTCCCAATTATTGTAGTTATGTAGTTTGAAAAAATATATATGTTGAAAT TTTACAAATAAAATTACTGTGTTTACTAAATGTGGTGTATGATTTTTTTCAGGACTATGGTCTTGAGTTATATCTGTACC GCACAGCATACTTGGTGGACCTTGACCATGATAAAGTTGGACGTGTTTTGAAGATTGATTCAATCACCAACGGTGACGCT TGGAGAGGAATGGATGCACTGATCTTCAACACGTGGCACTGGTGGACACACACCGGAAGCGCACAACCGTAGGATCACAC TTTCACATACATCCCTTATTTCCTTACATCATTGTTAATATCAACGGCTAATAAGTTTTATCACATTATAATTCAGGTGG GATTATATTCAGGAGAATAATAAATTGTACAAAGACATGAACCGTTTTGTCTTGTTCTACAAAGGGCTAAACACTTGGGC TAGATGGGTTGAAAAGAATGTTAATCCAGCAAAAACCAAAGTCTTCTTTCTAGGAATTTCTCCAGTGCATTACCAGTAAG TCACTAATTTCTCTTTCAATTATTATTGATTAATTTTTGTTTAAATATGTTTTTGCCTGTATTGTTGGAAATTATTGGCT TTACTTCTTATATTTCCAAAATAACCATGTTTCAGTCCCTGTTCCTGAGAGAATCTATACCAAAAGAAAAACATAGTAAA TTTTAGTACTCGAAATGGTCATTTTGAAAATACAGTAACTGAAAAAGAATAATTTATTAAGTATTAGGCTCTGATGGGAA TAATTTATTTGAGGTTATCTTATAGCACAAACGTTTATGCAAGTGTTTGTGAGCACTTATGTTAATTAGCTTATAACATA CCAATAAATTATTTTGAGCTTATTTTTATAAATTGTTTAGAATAGCTTGTGAATAATAGTTTATATTTATTTATAACATA TTTTCAGCTTATCTCAATAAGTTTATCAAATTAGCTTATAAATAAGCGCTTATGCTAGCCTTATTGTCACAAGTGCTTAA TTAAGCTGTTTATCCAAACGACCATTACTAAACATGCATCTATATTCTATGTTAATTTAAGTGTGCTAGATTTTAATTGG TAATATGTGGTGGGGTGTGATTAGGGGAAGAGATTGGAATCAACCAGCAAAGTCATGCATGAGTGAGGCACAACCATTCT TTGGCTTAAAGTACCCTGCCGGAAGACCAATGGCTTGGACGGTGGTGAACAAGGTGTTAACAAGGATGAGTAAGCCAGTG TATTTCTTAGATGTGACCACACTCTCACAGTACAGAAAAGATGCACATCCTGAAGGATACAGTGGGGTCATGGCAACAGA TTGTAGCCATTGGTGTCTTCCAGGACTTCCTGATACATGGAATGAGCTTCTGGCTGCAGCTCTTTCTGGTTAAAATTAAG GAGCTTGCACATTGTTGACAACTTTTGTTTATTAGGTTCAACTTGTTAGAGGATGGAAACCAATTGTTTTCAACTGTAGG AAATGTTTATTTAATTTGGCATTTTGATTCTTGTAATTGGGCAATAAGCAGGTTTGATGCTCCAAATTGTAAATGTACAT TGTTTTGGCAGAAATTTGCCTTGAATTCTTCCAAATGTTATTTTGAAGTGTGAAAATTAAGCATTTAGAAAGGACTTGGT GTGGCTCATTGTAAATGTAGTACCTGATGAAGTTCCCTTTTCTAAAGCATTAGATTAAAATGCAACAAGAGAATGATGTG ATGTTGCAAAGTAGAGCAAGCTCTTAGATTTAAATTTTATGCATAGAAAAAGTTCTCGTTGA
CDS sequence (LotjaGi3g1v0247100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCCATAATGTTACATGCTCTGTTCCTGACTCTGTTTCTGTTTTCCCACCAGACAAAAGCAGAGGAATTTGAATC CTTCAGTAATGCCACCAGTTCCAGAGCTAGGAGCCTCGCAGGAACATGTAACTGGTTCCAGGGGAAGTGGGTTTACGATG CTTCATATCCTCTCTATGATCCTTCTTCATGCCCATTCATAGATCAACAGTTCAATTGTCAAAAGCACGGTCGCAAAGAT AAACTTTACCAGAAGTATAGGTGGACACCATTTTCTTGTAGTTTGCCAAGGTTCAATGGATTGAGCTTCTTGAACAGAAA TAGAGGGAAGAAGATAATGTTTGTCGGTGATTCCTTAAGCTTAAACCAGTTCAACTCATTAGCATGTATGCTTCATGCTT GGGTACCAAAATCCAGGGCCACATTCGCACAGAGGGATGCTCTCTCCTCAGTGAAATTTGAGGACTATGGTCTTGAGTTA TATCTGTACCGCACAGCATACTTGGTGGACCTTGACCATGATAAAGTTGGACGTGTTTTGAAGATTGATTCAATCACCAA CGGTGACGCTTGGAGAGGAATGGATGCACTGATCTTCAACACGTGGCACTGGTGGACACACACCGGAAGCGCACAACCGT GGGATTATATTCAGGAGAATAATAAATTGTACAAAGACATGAACCGTTTTGTCTTGTTCTACAAAGGGCTAAACACTTGG GCTAGATGGGTTGAAAAGAATGTTAATCCAGCAAAAACCAAAGTCTTCTTTCTAGGAATTTCTCCAGTGCATTACCAGGG AAGAGATTGGAATCAACCAGCAAAGTCATGCATGAGTGAGGCACAACCATTCTTTGGCTTAAAGTACCCTGCCGGAAGAC CAATGGCTTGGACGGTGGTGAACAAGGTGTTAACAAGGATGAGTAAGCCAGTGTATTTCTTAGATGTGACCACACTCTCA CAGTACAGAAAAGATGCACATCCTGAAGGATACAGTGGGGTCATGGCAACAGATTGTAGCCATTGGTGTCTTCCAGGACT TCCTGATACATGGAATGAGCTTCTGGCTGCAGCTCTTTCTGGTTAA
Protein sequence (LotjaGi3g1v0247100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESIMLHALFLTLFLFSHQTKAEEFESFSNATSSRARSLAGTCNWFQGKWVYDASYPLYDPSSCPFIDQQFNCQKHGRKD KLYQKYRWTPFSCSLPRFNGLSFLNRNRGKKIMFVGDSLSLNQFNSLACMLHAWVPKSRATFAQRDALSSVKFEDYGLEL YLYRTAYLVDLDHDKVGRVLKIDSITNGDAWRGMDALIFNTWHWWTHTGSAQPWDYIQENNKLYKDMNRFVLFYKGLNTW ARWVEKNVNPAKTKVFFLGISPVHYQGRDWNQPAKSCMSEAQPFFGLKYPAGRPMAWTVVNKVLTRMSKPVYFLDVTTLS QYRKDAHPEGYSGVMATDCSHWCLPGLPDTWNELLAAALSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 4 | 360 | 357 | 3.0E-215 | – | |
| PANTHER | 4 | 360 | 357 | 3.0E-215 | ||
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 361 | 339 | - | – | |
| Pfam | 42 | 93 | 52 | 3.1E-21 | ||
| Pfam | 95 | 357 | 263 | 7.8E-88 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0247100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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