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LotjaGi3g1v0250100.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0250100
Transcript ID	LotjaGi3g1v0250100.1
Lotus japonicus genome version	Gifu v1.2
Description	Agenet domain protein; TAIR: AT1G06340.1 Plant Tudor-like protein; Swiss-Prot: sp\|F4I8W1\|DUF2_ARATH DUF724 domain-containing protein 2; TrEMBL-Plants: tr\|G7KCV4\|G7KCV4_MEDTR Agenet domain protein; Found in the gene: LotjaGi3g1v0250100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:41735453..41736182) extracted from Lotus japonicus Gifu genome v1.2.

CCCAATCTAGTATAAAAAGGACACACTGCTACTCCAAAATGCCACACCCCAAAACCAACTTCAATTCTCTTGCGAAGTTG CCGGAAATGCCTCCTCCTCCGCTTGTTTACAACGTCGGTGACAAAGTAGAAGTGATCGGCAGGGAGAAGGGTTTCGTTGG TTCATATTTCGAGGCGACCATTGTCTCTGCCCTCGATGATGGCCGCTACGAGGTTAAGTACGAGAACCTCATGCAGGACG GGAAGCCCAGGGCTCATCTGAAGGAGAAAGTGCCGGCGAAGGACCTCCGCCCGAGGCCGCCTCGTGTCGAACCCGGCGGT GTATTTGAGTCGGATCAGAGTGTAGACGTGTTCACCAATGGTGGGTGGTGGAAAGGGATGATCATCGGGGAGATGGACAA GGAGCGGTCTGTGTACTGCGTGAATTTCACCAAGCCCAAGAACGAGTATCATGAGTTCCGTTCGTCTCGCATCAGGGCTC ACCATGAGTTTCTTTCAGGGAGGTGGTTCCAAATGCCATGATCAATGGCAAGGTGTCGTTGTAATGGGTTTTCTTTTGTT CTTGTTGTTGGATTTTGGATATGGGGTTATGGGTCTCTGTGTGATGAACCTTTTTGTATTAATTTGCAATTGGTAATTGG TAATTGGTAATTGGTTCAGTTACAACACACTTTCTGTCTCTTTAATTCTGCTTGCCTTTGTTATTCTTTGGTTATTTTGT CTTTCTTTTC

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0250100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCACACCCCAAAACCAACTTCAATTCTCTTGCGAAGTTGCCGGAAATGCCTCCTCCTCCGCTTGTTTACAACGTCGG TGACAAAGTAGAAGTGATCGGCAGGGAGAAGGGTTTCGTTGGTTCATATTTCGAGGCGACCATTGTCTCTGCCCTCGATG ATGGCCGCTACGAGGTTAAGTACGAGAACCTCATGCAGGACGGGAAGCCCAGGGCTCATCTGAAGGAGAAAGTGCCGGCG AAGGACCTCCGCCCGAGGCCGCCTCGTGTCGAACCCGGCGGTGTATTTGAGTCGGATCAGAGTGTAGACGTGTTCACCAA TGGTGGGTGGTGGAAAGGGATGATCATCGGGGAGATGGACAAGGAGCGGTCTGTGTACTGCGTGAATTTCACCAAGCCCA AGAACGAGTATCATGAGTTCCGTTCGTCTCGCATCAGGGCTCACCATGAGTTTCTTTCAGGGAGGTGGTTCCAAATGCCA TGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0250100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPHPKTNFNSLAKLPEMPPPPLVYNVGDKVEVIGREKGFVGSYFEATIVSALDDGRYEVKYENLMQDGKPRAHLKEKVPA KDLRPRPPRVEPGGVFESDQSVDVFTNGGWWKGMIIGEMDKERSVYCVNFTKPKNEYHEFRSSRIRAHHEFLSGRWFQMP

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SMART	SM00743 View details on SM00743 Search for proteins/transripts with this domain View external data on SM00743	22	91	70	1.1E-9	IPR014002 Show description in modal box View details on IPR014002 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31917:SF45 View details on PTHR31917:SF45 Search for proteins/transripts with this domain View external data on PTHR31917:SF45	25	157	133	2.0E-31	–
PANTHER	PTHR31917 View details on PTHR31917 Search for proteins/transripts with this domain View external data on PTHR31917	25	157	133	2.0E-31	–
Pfam	PF05641 View details on PF05641 Search for proteins/transripts with this domain View external data on PF05641	27	88	62	8.8E-18	IPR008395 Show description in modal box View details on IPR008395 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00743 View details on SM00743 Search for proteins/transripts with this domain View external data on SM00743	94	153	60	0.45	IPR014002 Show description in modal box View details on IPR014002 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0250100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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