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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0252000 |
| Transcript ID | LotjaGi3g1v0252000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Multiprotein-bridging factor, putative; TAIR: AT2G42680.1 multiprotein bridging factor 1A; Swiss-Prot: sp|Q9SJI8|MBF1A_ARATH Multiprotein-bridging factor 1a; TrEMBL-Plants: tr|A0A151RR76|A0A151RR76_CAJCA Multiprotein-bridging factor 1b; Found in the gene: LotjaGi3g1v0252000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:42292277..42296089) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATACTATCAATGTCATCTGATTTTATGACAGCACTTACAATTTTCACGTTCGTTTTCATACAAAGAACCCTAAACA GAGACATACACAGAAAACCATCACCAGATAAACATGTCGGGAGTGGGCCCTCTTTCTCAGGATTGGGAACCCGTCGTCCT CCGTAAGAAAGCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGTCGCTCCGGCGCCGATATCG AGACCGTCAAGAAATGTTCGTTCCTGAAAAAAAAACCTCTCGGATTTCATTTTCATCGCTTGTTAGCTATTTTACCTAAT TAAAATTGTTCTTGATGTAATGAAGAAAAAAACAAGTGTTTGAATTGATTGATTGATTAATTATGGTTTTTTCGTCAATT AGGATCTGAACGTGTTCTCTTGTGATTATTGCAGCTGGGTATGATGATTTCATGTTGAGGCAACAGATTTAATTTGCTAA TTAAATCTTTTGAAGGGTTAGGTTAGGAGGGAAAGAAATTGGATTTTGAAAATGATTTAGTTTGGTTGAACTTAAAGCCA GGGCTAATTTCTAATATAATGGTTATGGTTGTGTATTTGGGTGTTTTTTTGTTGTTGATATGCTTTCTGATTTGGCTAGT TTAAATTGTGATTGTTCTATTTGTTGTCTTTACAGTTAATGCTGGGACTAACAAAGCTGCCTCTAGCAGCACTTCATTCA ACACTAAGAGGCTGGATGACGATACAGAAAGTTTAGCTCGTGAGTATTTTACATTTGGATAAATGATTTTTTTTTATGTA GTGCATCCACTTTTGAATGAGTTATGAATTACATAGGAGAGTAATGAGATGAATTATCTAGACATGTCCTCCATAAGGGA TGTTTGCAGCTAGGTAATTTTCCGTGAAATGACTTCTTTTTCATAGTTTGTGTTCTTTGTATTGGCTCTGACAACAGGAG TTACAGGGCTTTGGTACTGCCGTTTCTCTGAATATTAGTTAAATGCTAACTTGGTCAGTGTTATCAATTGCGGATGGCGG TCCATGGCGGAAAGCCAAAATACCGCCATATAATTATGGCGGATGCCATGGCGGCCAAAAATTATAAATATATATCTATG ATATTATATAGGATTATACATGCACACATTAAAAAACCTGCATAATGCAATTATACAATACAACAAATAAAAATTCTGCT TACTAATAACAACTTATATCATCTAATATAGGCTCAATATCATAGATATAATAGCAAATATCATAACAGAGGTTCAATAG ATATTAGATACTAGCAAAGACGCGGTTGCCAGAGTGGTCGCCGGTGGCCGCGAGAGTGGTCGCCGGCCGCAAGTGGCCGG GAATGGGCGGAGCGGTGGTCAGAGGTGGATGGGGAAGCAGCTATGGGAAGGTGAGACTTGAAAGGAGATTGGGTGAAATT AGGGTTTCTATTCTGAATTTGGGGGATTAGAATCTGAAATATGGACTTGGGCCATTAAAATCCATGGGCCCTTTGCACAG TTTTTTTTTAAAAAAAAAAGTCGGAAATTTTCGCCATTTTCCCGATATTTCCGCCATTTTCCCGATATCCGCCATGAATC GCGGCCGCCATGGCCCCGCCATGTCAAACCGCAATGCCACACACTTTTTGTGGCGGCATGTTAAAAACCCGATATGGAAA AACACCATGGCGCCGCCATGGCCGATCTTTGACAACACTGAACTTGGTTGAAGCGTATGATTTTAGCTTTGGACTACTTC AATCAAATGTTTGAAGTATTGTTGGATATTCTTAATTGCTTTTATATAGTTGCTTGGAAATTTATTTGGTATTTGTTTGG TTTTGTTTTGTTGTTGATATTATCAATTTCAATGGTTTGTCTATAGACATTGTTTATGATAGGACATTATGGATTGTGAA TTTGTGATGTATGTAGCTGACCAGACCTAATGGAAAAGTGGTTTTGGTTATTGTTGTTTAATTTTGTCACTCAAATTTAA GTTATACTAGAGAACTCATGTTGATTCTTCATACTGAACACAACTCAAAAATGAGTACATTACTTGGACATGGGAATGTT AACTTAGTTGAATGACCTTTTTTATAGAATTGGCGGAAATAATGAATTCTACCAATCCTACTCCTGTTCCTTTGAAAAAA TGTGCTTTTTTTGCATTAGAATGTGTGCTAATGGGGGTTGAAAGTGTTTCCAAACACACACTTAATAGTTAGTTAGTATC CCCCCCTCCCCCCCCCCAAAAAAACCCTGATCAACGTACAAATTATTTGTGAAGTGATTCTACCGTATTGCCTTGTATGC AGAGTTTCTGAATTAAATGATCCTATAGTTTTAATTCTGCTTCATAAAATTGGGGGGAGCATCAGAAAAATGTTTCTGTA GCAAAAAAACCCACTCATACATCATGAGCATTGCAAATGAGAACATGAGAAATGAAGGAAACTAATCTTTACTATTCAAT CTATGGGTGTCAAGTATGATTTTACTTAAATCTAATTTTGAATGTCCATGTAGATTAATCATTAATATTAATTTCTCTAC AGGATACATAATACTGTTTTTTTATCTTTCGCTGCTGCTTTATGAGATGTTAAACTATCCTGAGCCACAGGACCATATTT TCAAGGTTTTGATCACAATTTTCTCTTGCCCTTATGAGCATTGCTTGAACTTAATGGCATCCTGCTTTCTGTCTTCTTAC TGGTTGTACATATTTTAGATTTATAGACTTGTACATTCTGCTTAATAGAAAAATTATGTCCAGCAGCAGTAGTAGCCCTG CTGTTATTCCAGTTTTAGATTCTTATACCAAAATCAAAGCATATGATGCATTTTCTGTCTTCCACCTTTTTATCCTTTTA ACATCAAATATTCTTGAATGGCATCTTAGATGAGCGTGTCCCAACTGAACTCAAGAAGGCGATAATGCAAGCTAGGATGG ACAAGAAACTTACTCAGGCTCAGCTTGCTCAAGTAAACCCCATTCCCCTCTGGAAAAGACAAATTGAATTCAGTGTCTTC ATTATTAGTTTGGTATTATCAATGACAAGCATGTTTTCTTGCAGATAATCAATGAGAAGCCTCAAGTGATCCAAGAGTAT GAGTCAGGGAAGGCAATTCCAAACCAGCAGGTTATTGGCAAGTTGGAGAGAGCCCTTGGAGCTAAACTGCGTGGCAATAA ATAAGGAACCTTTTCTCATCATGCTTGTGCTCTAGATTTGCATGCCACTGTCGAAGAGTGTTGTGTTTGTGTTTGTGTTT GCGTTTGCGTTTGCTCTCTAATTGTGTATATTAATTATTAAGACATATATATGGTTGAGTATGCTGGGTCTCATCTGTTC GAATAAATAAATTAAGTTGCAGTTCAGCATGGATAAAGTTGTGTAAATGGAGTGGAAAAAAGAGAAGAAGAGAGAGAAAG GAAAATATATGGTGGATGATATGATGGCAAGAGAAGAGAGATTGTTAGGAAGCGAGATGTAAATGAAATTGATTGTGAAT GAATCATAGCTCTTTGGTTAAACCCTCCTTTTTAGCAGGGAATGTATGGAATGATTGGTTTATAGAGAAAGTCTTTATAG CAGTTTAATAAGCAGTTAAGTAAGTAAACTCAATTAAACATCTATCCTAGAGTAGACTACTAGACTTCATTACAACAAAG GAACCAATTCACCAAAATACAAATATATGTCAACGATGGAAAAGAAATCTCATTCACACCCTCATATTTGCATCCACTTT GAGAGAGATATGAACATCTCATTAACAGTTAACACCTCATGTTTACCTTTGAG
CDS sequence (LotjaGi3g1v0252000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGGAGTGGGCCCTCTTTCTCAGGATTGGGAACCCGTCGTCCTCCGTAAGAAAGCTCCCACCGCCGCCGCCAAGAA GGACGAGAAAGCCGTCAACGCCGCCCGTCGCTCCGGCGCCGATATCGAGACCGTCAAGAAATTTAATGCTGGGACTAACA AAGCTGCCTCTAGCAGCACTTCATTCAACACTAAGAGGCTGGATGACGATACAGAAAGTTTAGCTCATGAGCGTGTCCCA ACTGAACTCAAGAAGGCGATAATGCAAGCTAGGATGGACAAGAAACTTACTCAGGCTCAGCTTGCTCAAATAATCAATGA GAAGCCTCAAGTGATCCAAGAGTATGAGTCAGGGAAGGCAATTCCAAACCAGCAGGTTATTGGCAAGTTGGAGAGAGCCC TTGGAGCTAAACTGCGTGGCAATAAATAA
Protein sequence (LotjaGi3g1v0252000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGVGPLSQDWEPVVLRKKAPTAAAKKDEKAVNAARRSGADIETVKKFNAGTNKAASSSTSFNTKRLDDDTESLAHERVP TELKKAIMQARMDKKLTQAQLAQIINEKPQVIQEYESGKAIPNQQVIGKLERALGAKLRGNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 142 | 142 | 9.7E-85 | – | |
| PANTHER | 1 | 142 | 142 | 9.7E-85 | – | |
| Pfam | 9 | 79 | 71 | 6.8E-24 | ||
| MobiDBLite | 49 | 76 | 28 | - | – | |
| MobiDBLite | 50 | 64 | 15 | - | – | |
| Gene3D | 71 | 142 | 72 | 7.5E-30 | ||
| SUPERFAMILY | 81 | 138 | 58 | 9.85E-13 | ||
| CDD | 85 | 135 | 51 | 5.36747E-10 | ||
| SMART | 86 | 141 | 56 | 1.7E-11 | ||
| Pfam | 87 | 137 | 51 | 2.8E-12 | ||
| ProSiteProfiles | 87 | 141 | 55 | 12.528 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0252000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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