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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0253000 |
| Transcript ID | LotjaGi3g1v0253000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aspartate aminotransferase; TAIR: AT2G30970.1 aspartate aminotransferase 1; Swiss-Prot: sp|P46643|AAT1_ARATH Aspartate aminotransferase, mitochondrial; TrEMBL-Plants: tr|G7JCN3|G7JCN3_MEDTR Aspartate aminotransferase; Found in the gene: LotjaGi3g1v0253000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:42672373..42674242) extracted from Lotus japonicus Gifu genome v1.2.
CTCGCTCAACGGTAGATTCCTCCGCCACAGCTCCGTCGCCGGAGCTAGGTTCATGTCGTCGTGGTTCCGGAACATCGAGC CAGCTCCCAAGGACCCGATCCTCGGTGTTACCGAAGCTTTTCTTGCCGATCAGAGTCCAAACAAAGTCAATGTCGGAGTG GTGAGTTCTCCTTCGCTGTTCTCTCTGTGTATCAAAAACTCGAATCGGTTGAGAAAGAGAGTGTAATAATCCAATCACTC GAGCTGCAATTTTTGCAATTTTCTCTCATTTTCATTGAATGCATTTCGTTTATATTTTTTTTTCCTGTTCAGATTTCTGA TTTAGGTAGCAATTGAAAGTAATCTTGAATAAAAATTCTGAAAAATGGTTAGAAACAGGCTTTTTGTGATTTTTTGAAAC TTAATAATATTGTTATTTTTATTTTGAGTGGATTGTTGATTGACTGTGTATTATCATGTACTAATTGCTTATGTAACTGA ATTTAATTTTCTTTTTTATTTTTAATTTGCAAAAAAGGGAGCGTATCGCGATGACAATGGAAAACCTGTGGTTCTGGAAT GTGTTAGGGAAGCAGAGAGGAGGATTGCAGGAAGCCAATTCATGTGAGTGAAAGATTTGTTTTTATTTTTTTCAATTTTA ATGAGTGTTTTTGAAGTTATTAAAATTCCTGTTAAGTTTCAAATATGTTAAAAATTAAGTTGTGTTGTGATTGAATTCTG TTTTGTTTTTCTTACCCTGTTTTTTCATGTTGTAATACAATTGTGATTGATTCCTTGTGCCAATTTGTGGTGATCACTTA AAGTTCACCCACTAGCTGAGTCTGCTTCTTGGGTGTGTTTTGTCTGCATAAAGCGCTTTTGGAAATATGATTCTACTTGT TTTGCTTTTGTCCTTTGGCTTTGAGATTTGAGAATGAGAACTACTATCTCATTACCCTTTGCAAGGGAATCACGGTTCCT TGCACTGCATAATTGGTTTCTGTAGGTGTTTTTGGATGGTATAGGGAATCCTGCTTTATTGCTGCTGCTTTTCTGGCGTC AAAGCTGAAAACTTTAGAAGTATCCTGTTGATATAATTGGTTAGGCATAATGTTATTGAAAATTTAAAATGGTTCAGTTC TAATGCTATAGAGCATTGCCCTTTAAAGTCATCCTTTCACAATATATATTGGATATCTATAAACCATCTTGACTTTGCTT TTCTATTGGAATGAATGCTAAATCAGCTGTCAATATATTTCTGAAAATAAGAAATTAAATGGCATATACATTTGACCTTG CAGATGAAGAGGATGGTGACATTTTCTCTTTATTAAGGTGAAGGAAAAAAAAGGTGGACATGTTTTCCAGTCCAATTTTC AACTAATGCTACCATGCCATGAAAACCCAGTTTGTGAAATTAGATTTTATTGCCTCTGTTTTTAAAAATAATTGACTATT TGAGCATGAAATAAATAAATGAAACTTGATTCCACAAGGTTCATAGAACTAAATGAACATCTTATTCATGCTTACCTTCA GGGATATAAAGCTTCTAAGAAAGCCAGTTAGAAATAGAAATACTCTCCAGAAAACTATGTGTGTTTGAATATTTAAGTAT TACACCAGTTTAACTGGAATACTTGATCACTCTCCATACATGTGTCTGTGTTTGGCCAGGGAGTATCTTCCTATGGGTGG AAGCATAAAGATGGTTGAAGAATCACTGAAGCTGGGATATGGTGAAAACTCTCAGTTCATCAATGATAAACAAATAGCTG CTGTGCAGGCTTTATCTGGGACTGGTGCATGTCGACTTTTTGCTGCATTTCAACAGCGTTTTCACCCTAACACACAAATT TATATACCAGTGCCCACCTGGGCCAAGTGA
CDS sequence (LotjaGi3g1v0253000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCGTGGTTCCGGAACATCGAGCCAGCTCCCAAGGACCCGATCCTCGGTGTTACCGAAGCTTTTCTTGCCGATCA GAGTCCAAACAAAGTCAATGTCGGAGTGGGAGCGTATCGCGATGACAATGGAAAACCTGTGGTTCTGGAATGTGTTAGGG AAGCAGAGAGGAGGATTGCAGGAAGCCAATTCATGGAGTATCTTCCTATGGGTGGAAGCATAAAGATGGTTGAAGAATCA CTGAAGCTGGGATATGGTGAAAACTCTCAGTTCATCAATGATAAACAAATAGCTGCTGTGCAGGCTTTATCTGGGACTGG TGCATGTCGACTTTTTGCTGCATTTCAACAGCGTTTTCACCCTAACACACAAATTTATATACCAGTGCCCACCTGGGCCA AGTGA
Protein sequence (LotjaGi3g1v0253000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSWFRNIEPAPKDPILGVTEAFLADQSPNKVNVGVGAYRDDNGKPVVLECVREAERRIAGSQFMEYLPMGGSIKMVEES LKLGYGENSQFINDKQIAAVQALSGTGACRLFAAFQQRFHPNTQIYIPVPTWAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 133 | 133 | 1.4E-74 | – | |
| PANTHER | 1 | 133 | 133 | 1.4E-74 | ||
| SUPERFAMILY | 1 | 133 | 133 | 2.76E-28 | ||
| Gene3D | 8 | 62 | 55 | 5.1E-39 | ||
| Pfam | 30 | 133 | 104 | 1.9E-14 | ||
| Gene3D | 63 | 133 | 71 | 5.1E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
| Molecular function | Transaminase activity | Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi3g1v0253000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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