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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0257700 |
| Transcript ID | LotjaGi3g1v0257700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|A0A0B2QXC0|A0A0B2QXC0_GLYSO Putative AC transposase; Found in the gene: LotjaGi3g1v0257700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:44787778..44792030) extracted from Lotus japonicus Gifu genome v1.2.
ATATAATTTTGTGGTTGTAAAGGTTGATTTTGTGGTAGTTATGGTACTTTTTATGGGTACTCAATGGGTCTTGAACCCAT TGTAGTGTATTGGGAGTTGGGACTTATCTTGGACCATCCTAGTTGATAATAAATTAATAATAAATAAATTCAACCCAACT TAACTCAACTGGACCCGGTCCGGTACAATCCAACAAACCGGCCGGATCGACCCAATATTAACCCACCCGTTTTATGGACC CATGTATGTTGCATCTGAATCGGATCTAACCCAGTTTTCATCCACACGCAGCGCAGGCATCATGAGCATCGGGTTCAGTC CCTTTCGTCCCAATCCACAACCCTAATTCTGCCGGATCCTCCGATCGGACTCCGCCGTAATTCAAAACCCTCAACCACCG CATTCTCTGTAAGACTTCATTCATTCAATTCAATTCAAGTTTTCCTCTTTCTTTTTATATATAAAAATTAAAATGAAATA AAAAATATCTCCAAATCGTTAGCTTCTTCAATAAGTGTTTTCTTCTTACGAATCTTTAATATAAATTTCATTTTCACCCA CTCTGTTCCCTTTCTTGTGAAATTGCACTATTTAATGGTTTGAGAATTAAGGTTTAGTTGAAAAAAATGCAGAAATTTGG CATAGGAGTTTCATGATTAGTGGAATTTTCGGCATCGTTTAGCTTTCAGGTTATGATTTATTCAAATTTTTTATTTTTTT TTGAGTGAGACACTCTCAAAATTGGGGGTTTTCATGTTCAATTTTTCATGGGTATGCTATTGCTAAGTAATGAATATCCT ATCAAAATTAATTTAGAAAAAGGGAAAAAAAAAGGAATAGTTAACCTAAGTGTAGTTGGAAATGAACTATGGAAGATACC TGTCACTTGCCTTGTGTTTTGGTCCCTGCATTTTTTCTTGGATGTATAAAATCTTCTAAAATTGGGTGAACTTTGTATTG TTTATGAAAAAGAATGAGGGAGGGTTTGGAAGTGCAAGAGAAGGTTCCCGCCTTTACAAAACATGCTCAAAGGGTACATG AATTTAACTGAATGAAATGTTCAAGCTACAAAGCCTCTACATTTTTTTTTCTCTCTTACCCTTTCACCTAAGTGGTGGTG GTAGATTTATGACTTGTTGATGTTATGCATTTTTAATTTATTTATTTACCATTTTAGGTAGCTTTCTATGATTGATTTCT TTTAACTTACTCCATCTTTTCAGGTGTCATAAGTAGATTATTGCAGTCCCAAGCATATGTGATGGAAATAGCAAATGATT CAGGCATAAAGAAGCCGAAAAGGCTTACATCCGTCGTGTGGAATCACTTTGAAAGGATTAGGAAGGCGGATGTCTGCTAT GCTGTTTGCGTACACTGTAACAAGAAGCTTAGTGGGTCGAGTAACAGCGGAACTACTCATCTCAGAAATCATTTGATCCG ATGTCTGAAGCGGGCGAACTGCGATGTGTCTCAACTACTTACAGCAAAGAGGAGGAAAAAAGATAACACCGTCAGTGTTG CAAATTTTGGTTTTGAGGAAGGTCAGGGGAAGGAAGAATACATAAAGCCAACAACAATCATCAAGTTTGAGCAGGATCAT AAGAAAGATGAAATCATTAACTTTGCGGGTCGCAGATTTGATCCCGAGAAGAGTCAACTGGATCTTGCAAACATGATCAT GTTACATGGGTATCCATTGGCCATGGTTGAACACGTGGGGTTTAAGGTCTTTGTGAAGAACCTTCAGCCTCTCTTTGAGT TTATGCCAAATAGTGGTATAGAGGTTTATTGTTTAAAAATCTATCAGAGGGAGAAGGAGAGAGTTTATAACATGATAAAC AAATTACATGGCAGGATTAATCTGTCAATTGAACTGTGGTCTTCGGCTGACAACTCTTCACATTTATGTATAGCTGCCCA TTACATTGATGAGGAATGGACGTTGCAAAAGAAGGTCTTGAACTTCGTCACACTTGATCCTTCTCATACTGAAGACTTGC TTCCAGAAGCAATTCTTAAATGTCTCAGTGAATGGGATATTGAGTGTAAGCTGTTTGCTGTGACCTTGGATGATTTTTCC ATTAATGATGACATCACTGTTAGAATCAAAGAGCAAGCGTCTGTGAAAAGACCTTTCTTATGTACTCGTCAATTACTTGA CGTACGATCTGCGGCACATCTTCTAAATTCCATGGTTCAAGATGCCCTAGATGCGCTGCATGAGGTGATCCAAAAGATTC GAGAGAGCATCAGATATGTTAGAAGTTCACAAGTAGTACAAGGAAAATTTAATGAAATTGCTCTACAAGCTGGTGTTAAT TCTCAGAAGGCCCTGCTTCTTGATTTTCCTGGTCAGTGGAACTCAATATATCTCATGCTTGAAACGGCATTAGAGTACAA GACTGCTTTTTCTATCTTCCAGGAGCAAGATCCCTCCTATTCATCATTTCTAACTGAAGAAGAGTGGGAATGGGCGACTT CAGTTACTACTTATTTGAAACTTATACTTGAAATTACCAATGTCTTTTCAGGCAATGTGTTTCCTACAGCAAATATATAT TTCCCTGAGATCTGTGACATCCATATCCAACTAATTGACTGGTGCAGAAGTTCAGATAACTTTCTTAGTTCCATGGCTTT CAAAATGAAGTCGAGGTTTGACAAGTATTGGAGTAAGTGCAGTTTGGCTTTGGCAGTAGCAGCTATTTTAGACCCCCGAT TTAAAATGAAGTTGGTTGAATACTACTACTCCCAGATTTATGGCAGCACTGCTTTGGATCGCATCAAAGAAGTTTCTGAT TCAATCAAAGAACTTTTTAATGCGTATTCTGTCTGTTCAACTATGGTTGATCAAGGATCAACCTTGCCTGGTATCAGCTT ACCCAGTACAAGTTATGATGTTAGGGATAGACTGAAAGGCTTTGACAAGTTCCTTCACGACACATCACAGGGTCAGAATA TAACATCAGACTTGGACAAGTATTTGGAGGAACCGATTTTTCCTCGTAACTCTGATTTCAACATATTGAACTGGTGGAAA GTTCACATGCCAAGGTACCCGATCTTGTCTATGATGGCACGTGATGTTCTTGGGACTCCAATGTCAACAGCGGCACCAGA CTTGGCATTTAGCACTGGAGGGAGGGTGCTCGATCCTACCCGGTCTTCATTAAGCCCTGATACACGTCAAGCTTTAATAT GCACACAAGATTGGCTCCAAAATGAATCAGGAGCAGGTAAATACTCATTTTATCCCTCCCCCCAAAACAAAGAATAATCA TGCTTTTTTTAGCTTATCTCTAATTCATCATTTTAACTCGAACATCTTATCAGATTCAAGTTCATCATCAAGCCATTATG CCCTGCCGCTTCGTATCGAACCAACTTAGTTTTTCCATGACATGCTTCTCTACAACTTGCATCATATGCAGAAATTCTCT CCGAGTCCCGTTGTTGAACACGTTGTACTTAATTATGGGCTATGCTGCAAGCTTGTCAGGCTTCATCAGGTATATTATCT TTACCATCATGTTCTACAATGTCAGGCTATATCCAAGACTAAAAGTCCTGTTCATTCATTCATATTTGTTCGGAAATGCT CTATTTAACTCGCGTATATTCTATCACGAAGCATTGTATATTAAGAACTACCAAATTAAGTATTGTGTATATATTGACTA GATGTTAAATTTACAGAGCTTTTGCACATATCATCAGCTATTAATGTACTATCCATTGAGAGATGAATCTGAATTTGTAC AGAAGATGGCATGCTCTTATTTATCCCCTTGCATGAACTTTTTTGTGTAAGTGAGATTTATACGCAGAGAATCTTAAAAT GGCATCCATTTAAAGTTTAAACGGTCATTCCAATCTCTATCACCTGCCAAGTGAAATTCTTATATCACATCGTCTAGTTA TATTGTCAGATTGATTTTAATGTGGTCTTGTTACCGAAAATGTGGCGTTACAAGTGTTTTGTTTCACTTGTTAATTGAGC TGACCAGAACAACAAACAATTATTAATTCTTCTAAGTCACTACTCATTTAAGTTATAGCTTTTGTTGATAGTTCATGTCT TCATGAAAATGGGTTATGGAAAGTTGTTCTTGTCGTCAGTGACAGAGTACATGATTTATGTTAGAGATTTCATTTTACAC TTTTTTTTTCTAAAATATTCTTGTCATTCTAGTTTTTGAAGTTTTAGGGTTGATTTGGTTTTTCTCCAGGAACTAAGAAT TCCATAAAAAATC
CDS sequence (LotjaGi3g1v0257700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATAGCAAATGATTCAGGCATAAAGAAGCCGAAAAGGCTTACATCCGTCGTGTGGAATCACTTTGAAAGGATTAG GAAGGCGGATGTCTGCTATGCTGTTTGCGTACACTGTAACAAGAAGCTTAGTGGGTCGAGTAACAGCGGAACTACTCATC TCAGAAATCATTTGATCCGATGTCTGAAGCGGGCGAACTGCGATGTGTCTCAACTACTTACAGCAAAGAGGAGGAAAAAA GATAACACCGTCAGTGTTGCAAATTTTGGTTTTGAGGAAGGTCAGGGGAAGGAAGAATACATAAAGCCAACAACAATCAT CAAGTTTGAGCAGGATCATAAGAAAGATGAAATCATTAACTTTGCGGGTCGCAGATTTGATCCCGAGAAGAGTCAACTGG ATCTTGCAAACATGATCATGTTACATGGGTATCCATTGGCCATGGTTGAACACGTGGGGTTTAAGGTCTTTGTGAAGAAC CTTCAGCCTCTCTTTGAGTTTATGCCAAATAGTGGTATAGAGGTTTATTGTTTAAAAATCTATCAGAGGGAGAAGGAGAG AGTTTATAACATGATAAACAAATTACATGGCAGGATTAATCTGTCAATTGAACTGTGGTCTTCGGCTGACAACTCTTCAC ATTTATGTATAGCTGCCCATTACATTGATGAGGAATGGACGTTGCAAAAGAAGGTCTTGAACTTCGTCACACTTGATCCT TCTCATACTGAAGACTTGCTTCCAGAAGCAATTCTTAAATGTCTCAGTGAATGGGATATTGAGTGTAAGCTGTTTGCTGT GACCTTGGATGATTTTTCCATTAATGATGACATCACTGTTAGAATCAAAGAGCAAGCGTCTGTGAAAAGACCTTTCTTAT GTACTCGTCAATTACTTGACGTACGATCTGCGGCACATCTTCTAAATTCCATGGTTCAAGATGCCCTAGATGCGCTGCAT GAGGTGATCCAAAAGATTCGAGAGAGCATCAGATATGTTAGAAGTTCACAAGTAGTACAAGGAAAATTTAATGAAATTGC TCTACAAGCTGGTGTTAATTCTCAGAAGGCCCTGCTTCTTGATTTTCCTGGTCAGTGGAACTCAATATATCTCATGCTTG AAACGGCATTAGAGTACAAGACTGCTTTTTCTATCTTCCAGGAGCAAGATCCCTCCTATTCATCATTTCTAACTGAAGAA GAGTGGGAATGGGCGACTTCAGTTACTACTTATTTGAAACTTATACTTGAAATTACCAATGTCTTTTCAGGCAATGTGTT TCCTACAGCAAATATATATTTCCCTGAGATCTGTGACATCCATATCCAACTAATTGACTGGTGCAGAAGTTCAGATAACT TTCTTAGTTCCATGGCTTTCAAAATGAAGTCGAGGTTTGACAAGTATTGGAGTAAGTGCAGTTTGGCTTTGGCAGTAGCA GCTATTTTAGACCCCCGATTTAAAATGAAGTTGGTTGAATACTACTACTCCCAGATTTATGGCAGCACTGCTTTGGATCG CATCAAAGAAGTTTCTGATTCAATCAAAGAACTTTTTAATGCGTATTCTGTCTGTTCAACTATGGTTGATCAAGGATCAA CCTTGCCTGGTATCAGCTTACCCAGTACAAGTTATGATGTTAGGGATAGACTGAAAGGCTTTGACAAGTTCCTTCACGAC ACATCACAGGGTCAGAATATAACATCAGACTTGGACAAGTATTTGGAGGAACCGATTTTTCCTCGTAACTCTGATTTCAA CATATTGAACTGGTGGAAAGTTCACATGCCAAGGTACCCGATCTTGTCTATGATGGCACGTGATGTTCTTGGGACTCCAA TGTCAACAGCGGCACCAGACTTGGCATTTAGCACTGGAGGGAGGGTGCTCGATCCTACCCGGTCTTCATTAAGCCCTGAT ACACGTCAAGCTTTAATATGCACACAAGATTGGCTCCAAAATGAATCAGGAGCAGATTCAAGTTCATCATCAAGCCATTA TGCCCTGCCGCTTCGTATCGAACCAACTTAG
Protein sequence (LotjaGi3g1v0257700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIANDSGIKKPKRLTSVVWNHFERIRKADVCYAVCVHCNKKLSGSSNSGTTHLRNHLIRCLKRANCDVSQLLTAKRRKK DNTVSVANFGFEEGQGKEEYIKPTTIIKFEQDHKKDEIINFAGRRFDPEKSQLDLANMIMLHGYPLAMVEHVGFKVFVKN LQPLFEFMPNSGIEVYCLKIYQREKERVYNMINKLHGRINLSIELWSSADNSSHLCIAAHYIDEEWTLQKKVLNFVTLDP SHTEDLLPEAILKCLSEWDIECKLFAVTLDDFSINDDITVRIKEQASVKRPFLCTRQLLDVRSAAHLLNSMVQDALDALH EVIQKIRESIRYVRSSQVVQGKFNEIALQAGVNSQKALLLDFPGQWNSIYLMLETALEYKTAFSIFQEQDPSYSSFLTEE EWEWATSVTTYLKLILEITNVFSGNVFPTANIYFPEICDIHIQLIDWCRSSDNFLSSMAFKMKSRFDKYWSKCSLALAVA AILDPRFKMKLVEYYYSQIYGSTALDRIKEVSDSIKELFNAYSVCSTMVDQGSTLPGISLPSTSYDVRDRLKGFDKFLHD TSQGQNITSDLDKYLEEPIFPRNSDFNILNWWKVHMPRYPILSMMARDVLGTPMSTAAPDLAFSTGGRVLDPTRSSLSPD TRQALICTQDWLQNESGADSSSSSSHYALPLRIEPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 666 | 663 | 0.0 | – | |
| PANTHER | 4 | 666 | 663 | 0.0 | – | |
| SMART | 14 | 64 | 51 | 4.8E-18 | ||
| ProSiteProfiles | 14 | 69 | 56 | 10.968 | ||
| Pfam | 17 | 60 | 44 | 1.4E-7 | ||
| SUPERFAMILY | 17 | 64 | 48 | 1.31E-6 | ||
| SUPERFAMILY | 196 | 654 | 459 | 1.74E-75 | ||
| Pfam | 423 | 522 | 100 | 7.6E-33 | ||
| Pfam | 570 | 652 | 83 | 8.0E-30 | ||
| MobiDBLite | 655 | 669 | 15 | - | – | |
| MobiDBLite | 655 | 676 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0257700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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