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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0258900 |
| Transcript ID | LotjaGi3g1v0258900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT3G14850.2 TRICHOME BIREFRINGENCE-LIKE 41; Swiss-Prot: sp|F4IWA8|TBL41_ARATH Protein trichome birefringence-like 41; TrEMBL-Plants: tr|A0A072VK83|A0A072VK83_MEDTR Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein; Found in the gene: LotjaGi3g1v0258900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:45126537..45130928) extracted from Lotus japonicus Gifu genome v1.2.
GCTTGATGCTATGCAATCTAATCTCGCCGGGATAAATGTCGGTGTAATGTGTATCCTTAATCTCTAAAAATAACTCTCAT CTCTTTGTTTTTTTCTTTTCTATGGAAATCTCTCTCTCTCTTGAAAGAGTGTCCCAGGCAGTATCCATAAAACACACGCA CCAACACTTCTATAAATGCCGTGAGAGCGTTCAAATGTGAAGAATCACAAGAACAGAGAGAGGGAGGGACATAGAGAATC TCCACCTCCCTAGTTATTTCTTCATCCCAAATAGTAACTCTTTCTCTTTCTCTTCTACTACCTTGCAACATTATTGGAGA GAGAGAGAGAGAGAGAGAAAAATGGGTAAGTGTGTTGGGTGGAGTTTGTCTTGTTGGGTGTTGTTTTTCATCGTTGGTGT TGCGGTGGTGGGTGCGGCGGCGAAAGTGAAAGGAACGGCGGAGGAGCAGTGCGATTTGTACACGGGGAGTTGGGTGCTGG ATGAATCGTATCCGTTGTATCAACCCGCCACGTGTCCGTTCATCGAGCGCGAGTTCAGGTGCATACCCAATGGACGCCCT GATCTGATTTACACTCACTATAGGTGGCAGCCACTCGCCTGCGATTTGCTCAGGTTCGTTGGTAACCTCCTCTCTAACAA TGGTTTCCTTTGCCTCTGATTGGTTCTTTTTTTTTCTGTCACACACTTTAATGGTTTATCTTTTTCTGTAAAAAATAACC TTATCCTTGCCTCTTGGATTCTTAGATAAAAACATTGCTCATTAGTGATTGTCAGTTTTCTAGTATGTTTGTTTTTTTTA TATACATTTTTGAGATATATTGAATCATTTTGGGATCGAACTCTAGGCCTTTGTCACTCATTCTGTATATTTCTAAACTC TTATCAATTGAGCTATTATTATGATGATTTTTTTTCTTTAACGGAAATTGCGACAATACATAGGATTCAAACATATGTTT TGATTTTTACGAAGTTTAACTTGCTTATCACTAAAATAATATCCCGCTGGTTTGAATTAATTCAATTTATCTAATTTATT AAAACTTTCCTTTTTTTTTTATAATCGTGAGGGCTCAAGCCCATTTATAGGCGATCATCTTATATAATTTGCTGTGATCC CTTCATGCCAGCATGTAAAACAAAGGGATTTGAAAAAAACAAGAAGCAGAGAATTAGAGGTTCCGAATGTTTGACTGTGA TTGGCCATCGCATTTTCACGTGCACCCGTAAAAGCACTTTAGCAGCTGTTTAGGTAAACGTGCCTTAAAACAAGCTGAAC AAACCTCCCAACATTAATTCGACTAGAATCATTAGATCTTTATATTTTACTATGTCTGGTTTACCTGGGAATGGCTTATG TACTTTACAGGGACTGTGGTAAGATTTTTCAGTTGAATAATATTTTAACATGTATCATACAATTTTCTATAATACATATT AAAATATTACTGAGTCATATAAACAGTGGTAATTTTGCCTTATGTTTATCCAGTTAGTAATTAATTACCTTTTAGGTGAT TTTCATAAACCATTTTATAAATCATTTATTCTGAAACTGACGTTTATTTTACTCTTATCACCTTTAACATTTCTCTAATT CCAAATGAGTCCTTTATCTTTTCTTTCTAAATTTTGCTTTTAAAGAAAAGGTTGTAACTTTAACTGAAAAGTGAAACCTG GAGTTGTCAACTTCAACTGAAGGAGTCAGCAACAATGCCTATAAAACAAAAAGCAACAAATTATAATGATGATTTACATT TTTTTTTACATTGGAATTTAAATTACATTCGCTAGGGATCGAAACCTGAACCTTCCTCCCAACTCATATGTCCCCAGCTT TTACCACTTGAGCTATTATTCGGGGACGATGATTGACATTTCGTATTCAATTGTTTCATATTATTCATATAAAACAATTA TTTAAAATAGTTTAATAAGTATTTAATTTTCTGGTGGTGTAATAAATATTTTTATATACTTAACTGATATCTTGAACACA TTCATTACCATTGACTTATTTTATCTTTCCTATATTTAATGACTTACAGATTTAATGGGCGAGATTTTTTGGAGAGGATG AGGGGGAAGAGCATCATGTTCGTCGGAGATTCACTAAGCAGAAATCAATGGCAATCTCTAACATGTTTGCTTCACTCGGC TGTGCCCAATTCCAATTACACACAAGCTAGAGTTGGAGATGTTTCTATATTCACATTCACCGTAAGAATTATAATTTTTA GCATATTATATAATATGATTTTACGTTGATTTAACGTTTCCTTCCTCCAACCTTTTCATCGGTTATCCTGTCATGCTTGT CTTCATTATTTTTTGTGTGACATCTGAACTGAAGTGGGGAAAGAAGAATATTTCCTATAGAAAAATTGATAACATGCTGA TATAAAATGCATTTGTTGGGCTGTTCACTATTTTTGTGGATTTAAAATGCTACATAGAAACGTAAGCGATTACTAATAAG TAATTGATTCAGATGTTACTTCGTATCTTTTAATTTTTGAGTTTAATGATTGTGCACTTTTAGTGTAAAATATTTTTACA CAGATGTTCAATAATTGAATGTCACGTGTTTAAAAGTATTTATGTTCATTTTTATTTTAATTAAATTTAAAGTTTATTTT CTGATTTTGCAGTCCATCATTGACTGTCTGTGTAAAACATGTTTACACTAACGGTGCATTACCATTAAATTCTTAATTTT TTCATTTATAAGTATTGCTCTCATAAAATTATATAGTTTTGAAAAATAAGCATAAAATTTATACATAAAAAAATATAGAA AGAGTTTCTACATGAGATGCTTCTCATCCCTTTTTAATGGGTCCCCCTTCTTCATCCCTTTCTAACTAGGATGATAAATT AAAGCTTTCAAACTCAAAAGCTTAAGCTCCAGAAATATATATATTCTGAATTTCAAAAAAATAAATAAATATATATTCTG TATTCTTTCCTTATTGATATCACTTATCACTCATGCCAAAATTAATTCTTCACTTTGTGATTGTATATATTCTTCATTTA TTTTTTGTTCCATTATACACAATTTCATCTTTCTCTCAGCGAAAATTTTCATCCATATATTTTATTTATAATTTGCAGGA GTATAAAGTCAAAGTAATGCTAGATAGGAGTGTGTATCTAGTAGATGTTGTTAAAGAGGATATAGGCAGAGTGTTGAAGC TTGACTCCATACAAGGAAGCAAACTGTGGAATGGGATTGATATGCTCATCTTTAACACATGGCACTGGTGGAACCGCAGA GGCCCAACTCAACCGTAAGTTTCATAACTTCAATAATATATATTAGGCATCTAAATATAATCAAGTTATAAATCATTGAG AGTTGAATTAATAATTATTGCAATTTCTGTTGCTAAATGAGTTTATGTTGAATTGAATTCCCAGATGGGACTATATACAA GTGGGAGATAAAGTTATGAAAGACATGGATCGGATGAAGGCTTTTGAAATCGCACTTACAACATGGGCCGCGTGGGTGGA TGCCAATGTCGATCCTGCAAAAGTGAGGGTCTTCTTTCAAGGGATTTCCCCATCTCACTACAAGTAAGCGGTTAAAATCC ATCCACTTTATCAATTATTTGATCTAACATAGTAAAAGTAAATTGAAAGTAAAATAATTTATGTTTGAGTAAAACCATTA GTCTAAACTTATAAATATAGTAATCCATAAGGAGAAAAATTGAAATATGAAATTCGTTTTTGTTTTCATAGTTAATTACA AATTACCACTAATTTATTTTTTCTAGTATGATTAGTTGGATCAAATCTAAATTTACAAATGTCATCTCAAAAAAAAAAAT CTAAATTTACAAATGCAACAAAATAAAATTTCTTGTGGCATGACAATGTTTTTATTTGATGAGTGATTTCAGTGGCACCC TATGGAATGAACCAAGTGCAAAGAGTTGCATTCGAGAGACGACACCGGTGACCGGATCAACATATCCCGGTGGATTACCA CCAGCAGTAGAAGTGTTGAAGAGGGTACTAAGTACAATTAAGAAACCAGTGACACTGCTTGATATCACAACCCTTTCTCT ACTACGGAAAGATGGACATCCTTCAATTTATGGACTCATTGGAGCAAAGGGAATGGATTGCAGCCATTGGTGTCTTTCTG GCGTTCCAGATGCTTGGAACGAGATACTTTACAACAATATTGGATGAAAAATTTATTATTCATTATTTAATTGGGGGTTT AGTTGATTCTTATATTAATTTTATATAGACATTGATGGGTTTTAAGATATTTGTTTACATTTTTTTTGAACACGATATTT GTTTACATAAAATAATGAATTAGTTCGGAGTTCTTCAATATATTACATGGTATATTTATAAATCAAATATGG
CDS sequence (LotjaGi3g1v0258900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAGTGTGTTGGGTGGAGTTTGTCTTGTTGGGTGTTGTTTTTCATCGTTGGTGTTGCGGTGGTGGGTGCGGCGGC GAAAGTGAAAGGAACGGCGGAGGAGCAGTGCGATTTGTACACGGGGAGTTGGGTGCTGGATGAATCGTATCCGTTGTATC AACCCGCCACGTGTCCGTTCATCGAGCGCGAGTTCAGGTGCATACCCAATGGACGCCCTGATCTGATTTACACTCACTAT AGGTGGCAGCCACTCGCCTGCGATTTGCTCAGATTTAATGGGCGAGATTTTTTGGAGAGGATGAGGGGGAAGAGCATCAT GTTCGTCGGAGATTCACTAAGCAGAAATCAATGGCAATCTCTAACATGTTTGCTTCACTCGGCTGTGCCCAATTCCAATT ACACACAAGCTAGAGTTGGAGATGTTTCTATATTCACATTCACCGAGTATAAAGTCAAAGTAATGCTAGATAGGAGTGTG TATCTAGTAGATGTTGTTAAAGAGGATATAGGCAGAGTGTTGAAGCTTGACTCCATACAAGGAAGCAAACTGTGGAATGG GATTGATATGCTCATCTTTAACACATGGCACTGGTGGAACCGCAGAGGCCCAACTCAACCATGGGACTATATACAAGTGG GAGATAAAGTTATGAAAGACATGGATCGGATGAAGGCTTTTGAAATCGCACTTACAACATGGGCCGCGTGGGTGGATGCC AATGTCGATCCTGCAAAAGTGAGGGTCTTCTTTCAAGGGATTTCCCCATCTCACTACAATGGCACCCTATGGAATGAACC AAGTGCAAAGAGTTGCATTCGAGAGACGACACCGGTGACCGGATCAACATATCCCGGTGGATTACCACCAGCAGTAGAAG TGTTGAAGAGGGTACTAAGTACAATTAAGAAACCAGTGACACTGCTTGATATCACAACCCTTTCTCTACTACGGAAAGAT GGACATCCTTCAATTTATGGACTCATTGGAGCAAAGGGAATGGATTGCAGCCATTGGTGTCTTTCTGGCGTTCCAGATGC TTGGAACGAGATACTTTACAACAATATTGGATGA
Protein sequence (LotjaGi3g1v0258900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKCVGWSLSCWVLFFIVGVAVVGAAAKVKGTAEEQCDLYTGSWVLDESYPLYQPATCPFIEREFRCIPNGRPDLIYTHY RWQPLACDLLRFNGRDFLERMRGKSIMFVGDSLSRNQWQSLTCLLHSAVPNSNYTQARVGDVSIFTFTEYKVKVMLDRSV YLVDVVKEDIGRVLKLDSIQGSKLWNGIDMLIFNTWHWWNRRGPTQPWDYIQVGDKVMKDMDRMKAFEIALTTWAAWVDA NVDPAKVRVFFQGISPSHYNGTLWNEPSAKSCIRETTPVTGSTYPGGLPPAVEVLKRVLSTIKKPVTLLDITTLSLLRKD GHPSIYGLIGAKGMDCSHWCLSGVPDAWNEILYNNIG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 17 | 14 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| PANTHER | 22 | 356 | 335 | 2.3E-188 | ||
| PANTHER | 22 | 356 | 335 | 2.3E-188 | – | |
| Phobius | 26 | 357 | 332 | - | – | |
| Pfam | 35 | 88 | 54 | 8.7E-22 | ||
| Pfam | 91 | 354 | 264 | 7.5E-91 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0258900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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