Transcript — View — Lotus Base

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LotjaGi3g1v0263500.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0263500
Transcript ID	LotjaGi3g1v0263500.1
Lotus japonicus genome version	Gifu v1.2
Description	CBS domain-containing protein CBSX5; TAIR: AT5G53750.1 CBS domain-containing protein; Swiss-Prot: sp\|Q84WQ5\|CBSX5_ARATH CBS domain-containing protein CBSX5; TrEMBL-Plants: tr\|A0A151SR38\|A0A151SR38_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0263500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:49091236..49093654) extracted from Lotus japonicus Gifu genome v1.2.

CTCACCAGCAAAACGCAAACAACAACCAAAAAAACACACGTAGCCACCCACCACTTTCTTCCAATCCTTCACCGCCAACA AACCGCCGGCGGCGCCGTTCACCAAACGGAGCTTCACCCTTTGCATGGCAGTGAGCTTTCTGGCGCGTGAGGTGTCTGAC CTCTGTCTGGGCAAGCCGCCGCTGAAGTCGCTGCCGGCGTCCGCCACCGTCGCCGAGGCATTGGCCGCGCTCAAGAGCTC CGACGAGAGCTCCGTCAGCGTTTGGAGCTGCGACCACTCGAATGAGGAGCTAGGTCGTTGCGAATGCGTGGGGAAACTTT GCATCGTCGATGTTGTTTGCTACCTCTGCAAAGAGGAGAACCTCGTCTCTCCCTCTTCTGCTCTAAAAGCTCCAATTTCA TCGATTCTCCCTAAGGTTCCTGGTCTCGTCGTGCATCTTGAACCTTCTTCCAGGTACTACTTCTTCTCGAACCTTCTTTT GTTTCCTTCGTTAACTGACAATTGCAATGCAAGGTTGATTTATAATTTGTTTTATTCTTTTGATTGTTTTATTTAACTTG TTGTTATAATTGTTTTTAGGCTTTCTTTGAATTATTTAAACATGTCTTGAATTAGTTGAATCTGAAATTTTTGCCCTTTT TTTGTGGGGTGGATTATTGGAGTTTTTGATTTTGGGGTGTGTTACATTTACTTGGGAAAGAGTTTATACAAAATTTTAGA TGTCTACATTTCTTTCTTTCCTTGAGTTAGCTGAATCTGACATTTGTAATTTTATTTTTGGGGTTGGAGTGTTAATTACA TGAAAAGGGGAGGCTAATTAACAGAATTTTCTAGTTGAAACTGGAAATTCTGTTTCTAGGATAAACTGAAAATTTTATTT AGTGTATATTTTGTTTGGATGGCTTGATCCAAACACAAATGTGATTTCACGTAACTTTAGAGAACTTAGAATTTGACAGA GTTGACATATGTGGATCTGGGTTGAATTCAACGAAAATCCAAACCTACACTAAGTTGATGGGTCTTGATTGGTAATTCTG TCAATTAACCATCGTCCTTGTTGTTTTGATGTTTCAGCTTATTGGAAGCCATTGATCTCATACTCCAAGGAGCACAGAAT CTAGTGGTGCCAATCTTGCAAACAAAAAGGAGTCACATTTCAAGAAGAAAACAACTTCTGAAAGCATCAGCTACCCGCAG CCACAACGGTGCTGAGTTCTGCTGGTTAACCCAAGAGGACGTGATCCGGTTCCTGCTCGGCTCCATTGGCCTCTTCAGTC CGCTCCCTGCATTCTCCATCGATGCTCTCGGCATAATCACCACAGACGTGCTCGCCATTGACTACTACTCCCCTGCATCT TCTGCTCTGGGAGCAATCTCACAGTCCCTCACACAGCAAACTTCTGTTGGTGTTGTTGATAGTGATGGCACCTTCATTGG TGAGATATCACCCTTCAACCTTGCTTGCTGTGATGAGACGGTTGCGGCCGCCATTGCCACCTTGTCTGCCGGGGACTTGA TGGCCTACATTGATTGCGGTAGTCCCCCAGAAGATCTAGTGACAGTGGTCAAGGCGAGGTTGAAGGAGAAGAATCTGGAG AAAATGCTGCAAGAGTTCACTATTTCATCATCTTCCGCCGGCGCATTCTCTTCATCTTCCTCGGATGAGGAGAGCGCATC GACAAGGGCATTGACGAGGAGGCTCTCGAGGTCTTCAAGCTCCTCAGTCAGGATGGTGAGGAAGGCGGAAGCAATAGTGT GTCATCCCAAGAGCTCTTTGGTTGCTGTGATGATTCAAGCAATTGCTCACAGAGTGAACTACTTGTGGGTTATTGAGGAT GATTGCAGCTTGGTGGGGATTGTAACTTTTTCTAATATATTGAAGGTGTTCAGAGAACATGTAGAGACTGTTTAGATGGT GAGTTAGTGTGAACAAGGTTTTGGTTTTGGTGCCTCATAGAGTAGCATGAACCAAGGTCTATGAACATGGCCCTTCTGTT GTTATGGATATTGTTTTGTGGCTAGTGAGACTTGGGTTTTATCTTGCTTAATTTCAGTGTGCTTCATTTCTAATAAAATT CCCTCTGATGCATTTTCTTTGTCAACAACCAGTGTTTTCTGTTTCTGTTCCCTTATGTACTTCAAGTGTTCCTATCTCCA TGAGAATTGAATTTATGCTAATAAGTAATAAGTTCAAATGAGTTTGATGTGTTGTCATGAAATCAATAAGATTTGTATAC TATTTGGGCTTCAAATCTTCTGTGGTTGAGGTCAGTATCACACTGTTTATTTTCAGCAATGTAGTTGGTGACTACCACTT CTCTTAACAGCAATATTTTGTGAGATGCGTATACATCACTAGTATATTCTTGAAGTTCTTCCATAAGGATTGGATATTTG AATATGTCCTTCAAATCAT

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0263500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGTGAGCTTTCTGGCGCGTGAGGTGTCTGACCTCTGTCTGGGCAAGCCGCCGCTGAAGTCGCTGCCGGCGTCCGC CACCGTCGCCGAGGCATTGGCCGCGCTCAAGAGCTCCGACGAGAGCTCCGTCAGCGTTTGGAGCTGCGACCACTCGAATG AGGAGCTAGGTCGTTGCGAATGCGTGGGGAAACTTTGCATCGTCGATGTTGTTTGCTACCTCTGCAAAGAGGAGAACCTC GTCTCTCCCTCTTCTGCTCTAAAAGCTCCAATTTCATCGATTCTCCCTAAGGTTCCTGGTCTCGTCGTGCATCTTGAACC TTCTTCCAGCTTATTGGAAGCCATTGATCTCATACTCCAAGGAGCACAGAATCTAGTGGTGCCAATCTTGCAAACAAAAA GGAGTCACATTTCAAGAAGAAAACAACTTCTGAAAGCATCAGCTACCCGCAGCCACAACGGTGCTGAGTTCTGCTGGTTA ACCCAAGAGGACGTGATCCGGTTCCTGCTCGGCTCCATTGGCCTCTTCAGTCCGCTCCCTGCATTCTCCATCGATGCTCT CGGCATAATCACCACAGACGTGCTCGCCATTGACTACTACTCCCCTGCATCTTCTGCTCTGGGAGCAATCTCACAGTCCC TCACACAGCAAACTTCTGTTGGTGTTGTTGATAGTGATGGCACCTTCATTGGTGAGATATCACCCTTCAACCTTGCTTGC TGTGATGAGACGGTTGCGGCCGCCATTGCCACCTTGTCTGCCGGGGACTTGATGGCCTACATTGATTGCGGTAGTCCCCC AGAAGATCTAGTGACAGTGGTCAAGGCGAGGTTGAAGGAGAAGAATCTGGAGAAAATGCTGCAAGAGTTCACTATTTCAT CATCTTCCGCCGGCGCATTCTCTTCATCTTCCTCGGATGAGGAGAGCGCATCGACAAGGGCATTGACGAGGAGGCTCTCG AGGTCTTCAAGCTCCTCAGTCAGGATGGTGAGGAAGGCGGAAGCAATAGTGTGTCATCCCAAGAGCTCTTTGGTTGCTGT GATGATTCAAGCAATTGCTCACAGAGTGAACTACTTGTGGGTTATTGAGGATGATTGCAGCTTGGTGGGGATTGTAACTT TTTCTAATATATTGAAGGTGTTCAGAGAACATGTAGAGACTGTTTAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0263500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVSFLAREVSDLCLGKPPLKSLPASATVAEALAALKSSDESSVSVWSCDHSNEELGRCECVGKLCIVDVVCYLCKEENL VSPSSALKAPISSILPKVPGLVVHLEPSSSLLEAIDLILQGAQNLVVPILQTKRSHISRRKQLLKASATRSHNGAEFCWL TQEDVIRFLLGSIGLFSPLPAFSIDALGIITTDVLAIDYYSPASSALGAISQSLTQQTSVGVVDSDGTFIGEISPFNLAC CDETVAAAIATLSAGDLMAYIDCGSPPEDLVTVVKARLKEKNLEKMLQEFTISSSSAGAFSSSSSDEESASTRALTRRLS RSSSSSVRMVRKAEAIVCHPKSSLVAVMIQAIAHRVNYLWVIEDDCSLVGIVTFSNILKVFREHVETV

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR13780 View details on PTHR13780 Search for proteins/transripts with this domain View external data on PTHR13780	1	387	387	4.4E-176	–
PANTHER	PTHR13780:SF121 View details on PTHR13780:SF121 Search for proteins/transripts with this domain View external data on PTHR13780:SF121	1	387	387	4.4E-176	–
SUPERFAMILY	SSF54631 View details on SSF54631 Search for proteins/transripts with this domain View external data on SSF54631	7	121	115	3.94E-5	–
ProSiteProfiles	PS51371 View details on PS51371 Search for proteins/transripts with this domain View external data on PS51371	16	80	65	6.494	IPR000644 Show description in modal box View details on IPR000644 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54631 View details on SSF54631 Search for proteins/transripts with this domain View external data on SSF54631	179	385	207	1.65E-12	–
ProSiteProfiles	PS51371 View details on PS51371 Search for proteins/transripts with this domain View external data on PS51371	190	251	62	6.193	IPR000644 Show description in modal box View details on IPR000644 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51371 View details on PS51371 Search for proteins/transripts with this domain View external data on PS51371	329	387	59	9.411	IPR000644 Show description in modal box View details on IPR000644 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00571 View details on PF00571 Search for proteins/transripts with this domain View external data on PF00571	334	380	47	6.5E-5	IPR000644 Show description in modal box View details on IPR000644 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0263500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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