Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR13780
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 53 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.106s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0059619.1
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max] gi|356556126|ref|XP_003546378.1| chr0 19753087 19759550 +
1 domain prediction
 –
Lj0g3v0113969.1
n.a. PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Glycine max] gi|356498190|ref|XP_003517936.1| chr0 49846411 49846982 -
1 domain prediction
 –
Lj0g3v0197239.1
n.a. Meiotically up-regulated gene 70 protein [Medicago truncatula] gi|357520151|ref|XP_003630364.1| chr0 96182437 96184088 -
1 domain prediction
 –
Lj0g3v0291799.1
n.a. PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Glycine max] gi|356514029|ref|XP_003525710.1| chr0 151410190 151412027 +
1 domain prediction
 –
Lj0g3v0291819.1
n.a. PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like isoform 2 [Glycine max] gi|356516561|ref|XP_003526962.1| chr0 151412136 151412415 +
1 domain prediction
 –
Lj0g3v0291839.1
n.a. SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula] gi|357477103|ref|XP_003608837.1| chr0 151412905 151413070 +
1 domain prediction
 –
Lj0g3v0291859.1
n.a. AKIN gamma [Medicago truncatula] gi|32364482|gb|AAO61674.1| chr0 151413193 151413523 +
1 domain prediction
 –
Lj0g3v0307699.1
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max] gi|356574949|ref|XP_003555605.1| chr0 160604987 160611940 +
1 domain prediction
 –
Lj1g3v1077730.1
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like isoform X2 [Cicer arietinum] gi|502113314|ref|XP_004494610.1| chr1 13218354 13225730 +
1 domain prediction
 –
Lj1g3v1363200.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein [Medicago truncatula] gi|357464823|ref|XP_003602693.1| chr1 16366827 16373285 -
1 domain prediction
 –
Lj1g3v1363200.2
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein [Medicago truncatula] gi|357464823|ref|XP_003602693.1| chr1 16367446 16373285 -
1 domain prediction
 –
Lj1g3v1500470.1
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cicer arietinum] gi|502133303|ref|XP_004501712.1| chr1 17892236 17907543 +
1 domain prediction
 –
Lj1g3v1500470.2
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Glycine max] gi|356508821|ref|XP_003523152.1| chr1 17892661 17907543 +
1 domain prediction
 –
Lj1g3v2809270.1
n.a. PREDICTED: CBS domain-containing protein CBSX6-like [Glycine max] gi|356568477|ref|XP_003552437.1| chr1 31964337 31964668 -
1 domain prediction
 –
Lj1g3v2809300.1
n.a. PREDICTED: CBS domain-containing protein CBSX6-like [Glycine max] gi|356531916|ref|XP_003534522.1| chr1 31964670 31965278 -
1 domain prediction
 –
Lj1g3v2809320.1
n.a. PREDICTED: CBS domain-containing protein CBSX6-like [Glycine max] gi|356568477|ref|XP_003552437.1| chr1 31966894 31967315 -
1 domain prediction
 –
Lj1g3v3384560.1
n.a. SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula] gi|357467315|ref|XP_003603942.1| chr1 38905243 38906421 +
1 domain prediction
 –
Lj1g3v3384570.1
n.a. PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cicer arietinum] gi|502130892|ref|XP_004500805.1| chr1 38906569 38907397 +
1 domain prediction
 –
Lj2g3v1337700.1
n.a. SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula] gi|357486631|ref|XP_003613603.1| chr2 21011285 21013073 -
1 domain prediction
 –
Lj4g3v1388280.1
n.a. PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cicer arietinum] gi|502176183|ref|XP_004515816.1| chr4 21288739 21292455 -
1 domain prediction
 –
Lj4g3v2367350.1
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Cicer arietinum] gi|502151115|ref|XP_004508285.1| chr4 32579276 32584880 +
1 domain prediction
 –
Lj4g3v2367350.2
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Cicer arietinum] gi|502151115|ref|XP_004508285.1| chr4 32579276 32586241 +
1 domain prediction
 –
Lj4g3v2367350.3
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Cicer arietinum] gi|502151115|ref|XP_004508285.1| chr4 32579906 32586241 +
1 domain prediction
 –
Lj4g3v2845100.1
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB3-like [Cicer arietinum] gi|502139757|ref|XP_004503889.1| chr4 38007849 38011649 +
1 domain prediction
 –
Lj4g3v2845100.3
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB3-like [Cicer arietinum] gi|502139757|ref|XP_004503889.1| chr4 38010277 38011649 +
1 domain prediction
 –
Lj4g3v2916510.1
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Glycine max] gi|356511510|ref|XP_003524468.1| chr4 38794869 38798213 +
1 domain prediction
 –
Lj5g3v2266290.1
n.a. SNF4b [Medicago truncatula] gi|32364484|gb|AAO61675.1| chr5 33130740 33135360 -
1 domain prediction
 –
Lj6g3v1422220.1
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max] gi|356556126|ref|XP_003546378.1| chr6 16908036 16914225 -
1 domain prediction
 –
Lj6g3v2043210.1
n.a. PREDICTED: CBS domain-containing protein CBSX5-like [Glycine max] gi|356549353|ref|XP_003543058.1| chr6 24128691 24131232 -
1 domain prediction
 –
LotjaGi1g1v0325800.1
n.a. CBS domain-containing protein; TAIR: AT3G52950.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; Swiss-Prot: sp|Q9LF97|Y3295_ARATH CBS domain-containing protein CBSCBSPB3; TrEMBL-Plants: tr|G7J2M9|G7J2M9_MEDTR CBS/octicosapeptide/phox/Bemp1 (PB1) domain protein; Found in the gene: LotjaGi1g1v0325800 LjG1.1_chr1 77930308 77937241 +
1 domain prediction
 –
LotjaGi1g1v0337600.1
n.a. CBS domain-containing protein; TAIR: AT5G50530.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; Swiss-Prot: sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4; TrEMBL-Plants: tr|A0A0S3RFH2|A0A0S3RFH2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0337600 LjG1.1_chr1 79798520 79808486 +
1 domain prediction
 –
LotjaGi1g1v0337600.2
n.a. CBS domain-containing protein; TAIR: AT5G50530.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; Swiss-Prot: sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4; TrEMBL-Plants: tr|A0A0R0KHG6|A0A0R0KHG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0337600 LjG1.1_chr1 79800426 79807660 +
1 domain prediction
 –
LotjaGi1g1v0484000.1
n.a. CBS domain-containing family protein; TAIR: AT1G65320.1 Cystathionine beta-synthase (CBS) family protein; Swiss-Prot: sp|Q8GZA4|CBSX6_ARATH CBS domain-containing protein CBSX6; TrEMBL-Plants: tr|A0A0B2RAW6|A0A0B2RAW6_GLYSO CBS domain-containing protein CBSX6; Found in the gene: LotjaGi1g1v0484000 LjG1.1_chr1 99738264 99742334 +
1 domain prediction
 –
LotjaGi1g1v0566200.1
n.a. SNF1-related protein kinase regulatory subunit gamma 1; TAIR: AT3G48530.1 SNF1-related protein kinase regulatory subunit gamma 1; Swiss-Prot: sp|Q8LBB2|KING1_ARATH SNF1-related protein kinase regulatory subunit gamma-1; TrEMBL-Plants: tr|A0A151U795|A0A151U795_CAJCA SNF1-related protein kinase regulatory subunit gamma 1; Found in the gene: LotjaGi1g1v0566200 LjG1.1_chr1 109960136 109963013 +
1 domain prediction
 –
LotjaGi1g1v0772400.1
n.a. Sucrose nonfermenting 4-like protein; TAIR: AT1G09020.1 sucrose nonfermenting-like protein; Swiss-Prot: sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein; TrEMBL-Plants: tr|A0A1J7HL98|A0A1J7HL98_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0772400 LjG1.1_chr1 134507249 134527053 +
1 domain prediction
 –
LotjaGi2g1v0307400.2
n.a. SNF1-related kinase regulatory subunit gamma 1; TAIR: AT1G69800.1 Cystathionine beta-synthase (CBS) protein; Swiss-Prot: sp|Q9CAR3|KINGL_ARATH SNF1-related protein kinase regulatory subunit gamma-1-like; TrEMBL-Plants: tr|G7KB20|G7KB20_MEDTR SNF1-related kinase regulatory subunit gamma 1; Found in the gene: LotjaGi2g1v0307400 LjG1.1_chr2 78181991 78192799 -
1 domain prediction
 –
LotjaGi2g1v0307400.3
n.a. SNF1-related kinase regulatory subunit gamma 1; TAIR: AT1G69800.1 Cystathionine beta-synthase (CBS) protein; Swiss-Prot: sp|Q9CAR3|KINGL_ARATH SNF1-related protein kinase regulatory subunit gamma-1-like; TrEMBL-Plants: tr|G7KB20|G7KB20_MEDTR SNF1-related kinase regulatory subunit gamma 1; Found in the gene: LotjaGi2g1v0307400 LjG1.1_chr2 78183974 78186314 -
1 domain prediction
 –
LotjaGi3g1v0008500.1
n.a. AMP-activated kinase, gamma regulatory subunit, putative; TAIR: AT1G15330.1 Cystathionine beta-synthase (CBS) protein; Swiss-Prot: sp|Q9XI37|PV42A_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42a; TrEMBL-Plants: tr|A0A0S3SF84|A0A0S3SF84_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0008500 LjG1.1_chr3 963975 968665 +
1 domain prediction
 –
LotjaGi3g1v0263500.1
n.a. CBS domain-containing protein CBSX5; TAIR: AT5G53750.1 CBS domain-containing protein; Swiss-Prot: sp|Q84WQ5|CBSX5_ARATH CBS domain-containing protein CBSX5; TrEMBL-Plants: tr|A0A151SR38|A0A151SR38_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0263500 LjG1.1_chr3 49091236 49093654 +
1 domain prediction
 –
LotjaGi4g1v0222200.1
n.a. SNF1-related kinase regulatory subunit gamma 1; TAIR: AT3G48530.1 SNF1-related protein kinase regulatory subunit gamma 1; Swiss-Prot: sp|Q8LBB2|KING1_ARATH SNF1-related protein kinase regulatory subunit gamma-1; TrEMBL-Plants: tr|V7CDU3|V7CDU3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0222200 LjG1.1_chr4 52710727 52715958 -
1 domain prediction
 –
LotjaGi4g1v0222200.2
n.a. SNF1-related kinase regulatory subunit gamma 1; TAIR: AT3G48530.1 SNF1-related protein kinase regulatory subunit gamma 1; Swiss-Prot: sp|Q8LBB2|KING1_ARATH SNF1-related protein kinase regulatory subunit gamma-1; TrEMBL-Plants: tr|V7CDU3|V7CDU3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0222200 LjG1.1_chr4 52710822 52715830 -
1 domain prediction
 –
LotjaGi4g1v0344600.1
n.a. Sucrose nonfermenting 4-like protein; TAIR: AT1G09020.1 sucrose nonfermenting-like protein; Swiss-Prot: sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein; TrEMBL-Plants: tr|A0A151STI0|A0A151STI0_CAJCA 5'-AMP-activated protein kinase subunit gamma-2 prkag; Found in the gene: LotjaGi4g1v0344600 LjG1.1_chr4 72447489 72465372 +
1 domain prediction
 –
LotjaGi4g1v0344600.2
n.a. Sucrose nonfermenting 4-like protein; TAIR: AT1G09020.1 sucrose nonfermenting-like protein; Swiss-Prot: sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein; TrEMBL-Plants: tr|A0A151STI0|A0A151STI0_CAJCA 5'-AMP-activated protein kinase subunit gamma-2 prkag; Found in the gene: LotjaGi4g1v0344600 LjG1.1_chr4 72447509 72455268 +
1 domain prediction
 –
LotjaGi4g1v0344600.3
n.a. 5'-AMP-activated protein kinase subunit gamma; TAIR: AT1G09020.1 sucrose nonfermenting-like protein; Swiss-Prot: sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein; TrEMBL-Plants: tr|A0A151STI0|A0A151STI0_CAJCA 5'-AMP-activated protein kinase subunit gamma-2 prkag; Found in the gene: LotjaGi4g1v0344600 LjG1.1_chr4 72448187 72454378 +
1 domain prediction
 –
LotjaGi4g1v0344600.4
n.a. Sucrose nonfermenting 4-like protein; TAIR: AT1G09020.1 sucrose nonfermenting-like protein; Swiss-Prot: sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein; TrEMBL-Plants: tr|A0A151STI0|A0A151STI0_CAJCA 5'-AMP-activated protein kinase subunit gamma-2 prkag; Found in the gene: LotjaGi4g1v0344600 LjG1.1_chr4 72448187 72454391 +
1 domain prediction
 –
LotjaGi4g1v0417700.1
n.a. CBS domain-containing protein; TAIR: AT5G50530.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; Swiss-Prot: sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4; TrEMBL-Plants: tr|K7KS53|K7KS53_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0417700 LjG1.1_chr4 79321341 79325448 -
1 domain prediction
 –
LotjaGi4g1v0417700.2
n.a. CBS domain-containing protein; TAIR: AT5G50530.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; Swiss-Prot: sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4; TrEMBL-Plants: tr|K7KS52|K7KS52_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0417700 LjG1.1_chr4 79321341 79325448 -
1 domain prediction
 –
LotjaGi5g1v0221500_LC.1
n.a. Sucrose nonfermenting 4-like protein; TAIR: AT1G09020.1 sucrose nonfermenting-like protein; Swiss-Prot: sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein; TrEMBL-Plants: tr|I1NIZ8|I1NIZ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0221500_LC LjG1.1_chr5 52797677 52807896 -
1 domain prediction
 –
LotjaGi6g1v0247700.1
n.a. Sucrose nonfermenting 4-like protein; TAIR: AT1G09020.1 sucrose nonfermenting-like protein; Swiss-Prot: sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein; TrEMBL-Plants: tr|I1MGR7|I1MGR7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0247700 LjG1.1_chr6 55979229 55986334 -
1 domain prediction
 –
LotjaGi6g1v0247700.2
n.a. Sucrose nonfermenting 4-like protein; TAIR: AT1G09020.1 sucrose nonfermenting-like protein; Swiss-Prot: sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein; TrEMBL-Plants: tr|I1L118|I1L118_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0247700 LjG1.1_chr6 55980355 55985712 -
1 domain prediction
 –