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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0271900 |
| Transcript ID | LotjaGi3g1v0271900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF2921 family protein; TAIR: AT4G21700.1 DUF2921 family protein, putative (DUF2921); Swiss-Prot: sp|Q5SKN1|CARB_THET8 Carbamoyl-phosphate synthase large chain; TrEMBL-Plants: tr|A0A072VAA8|A0A072VAA8_MEDTR DUF2921 family protein; Found in the gene: LotjaGi3g1v0271900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:52503518..52506950) extracted from Lotus japonicus Gifu genome v1.2.
AATATACTAAAATAGTACCCAAAAAATCAATATCTGATGAGTTAATAGAAGCTTAGAATATTTGGTTGAAATGTCGAAAA ATCTCCAAATTTTGTTCAAGTAAAAAAATAGAAGCTTAGTTTGACTCTAGCATATAGAGAGAAGCCTCAAGGCTCAAGCT ACTATCTCATTTTCCATTCTTCCTCTCTAACCACAGAAACCCGTACCAGTTGAGAGATGGTGATGGATTCTCTTCTCTCC ATCTTCTTTCTCTTCACTCTCTTCTCCTCCAACCTTTTCCCCACCTTTGCATCACAACAACCCTCTTACAAAGACCACTG TGCTTCCATAATCCCAGAGTCAACTCCCAAGAACCCAACCCTCAAACCTTTTCCTCTTGGTGAACAGCACAAAGGTTACT TCACAGGAGGTGAGAGGATCATTGATGCCAGAACTTCATTGAACCGATACACCTTTTACCTTCAATACATGCAAGAAACT CACACCCCTGGCTTGTTCAAAATTCATGGTACTGTTTCATTTAGAAGCACCCCCAACTCTGTTTATGTGAGGGGGAACTT CAGCTTTAGTACTAAAAGGTCAAGTTATGGGCAACGTCACCTCCATAGGAGTTACTTAACCTTCAAGCTTGATGGGTTCT GGTCTGAATCTTCAGGGAAGGTTTGCTTGGTTGGAAAAGGAAGTGGCTATTCCAGAACAGGTAACACTCTTGATCTTGAT GCTGTTTTTAAGCTTCAAAATGTCTTCAATGCTAGTAATGTAACTAGCTTGGTTAGTGGAAGCTTGGAGAGTTTTAGTAC TAATTCTGACAAGGATGATGAGAGTTACTTTGAACCCATTTCGCTTTTGGTGTTTCCAAAAGCAAATTACAATTATACCT TGGATTCCTTTGAAAATGAGTTCTCTTCTGGGAAATTTTCTGAGCAGGGTTTATCATCACTGAATTTATCAGATTCATTA AGCTTTTGCTCATATCCTCTCTCAAGGGAGTTGAGAAGACTCCAGTTAGAGTACTCTCATGAGTGCAATTCTTCTAAGAA CTGCTCTCCTATTAGTGGTGGTTCTGGTCCACTTCCATCTCTGGTGTCTTTGAAAGGAATTGAATGTTCTTCTTCCACCA ACAAGCATAGGTTGAGGGCTCTAGTTACATTTTCAAATATTAGTCAATATTGGATTAACCAAGATTTTAATCCCAAAACC ATATTGGTAGGGGAGGGATGGTGGGATGAGAAGAGAAACACATTGTGTGTAGTTGCTTGCCGTATCATAGGCAAAGAATC ATCCTTGGCGGGTACTCAAGTGGGTGATTGCTCAGTGAGATTTACATTGAGATTCTCTTCAATTTGGTCAATAAAAAACA CTAATAGCTTAGTGGGGCAAATTTGGAGCAGAAAGGTTGCTAATGATCCAGGCTACTTCAAGATGATCACAGTTAAAAAC TATGATGATGGAAGGGTGGGGGAATTTCAAGCCTCAAAGTATGAGTATACACAGCTAGACAGAGTTAAGAAATCATGCCC AACAAACAAGAATGTGAAGAATCATGATAGATTATATCCAGATGCTGATTCTCAAAACATGAGATTTGATATGAGAGTTA CTGAATCAAAAAGAAGAGTAGCCTGGGGCTATTCATCTCCCTCTTCTGTTGGTGGTAAGGTTAAGGTACCTTCTAACTTT GTTAATTTCATTTCTAACTCAAGCTCTCAAACAGAAGTTCCTGATGTTCCAATCCGCACCAGTGGTAGCTTGTTTAACAT TAGCTACAAGATTAGCATCTATTCTAATTACACATTACGCGACAAGAATTCAGTGTTTAACTTGTCCTCTGAGGATGTGA AGATTTCTGCAGAAGGTATCTATGATTCTGGAACAGGAACTTTGTGTATGATCGGTTGCCGGGATCTTCCCTCAAAGACA CCAATAGCTGGCTCTGTGGACTGCGAGATTTTAGTGAAGTTTCAGTTCCCATCACTAGATGCAAAAGGTGAAAGCTACAT TAAGGGAAGCATCGAAAGCACACGCAAAAAATCAGATCCTCTTTATTTCAGAAGTTTAGATCTTTCTTCAGCTGCATTTT ACAGAGAAACAGCCCAAAAAGCTGTTTGGAGAATGGACATGGAGATCACCATGGTTCTGACATCAACCACTCTAGCATGT ATTTTTGTGGGATTGCAACTCTTCCATGTGAAGAGGAACCCTGATTTACTACCCTTCATCTCCCTCATGATGATGTCAAT TCTAACGTTAGGTCACATGATCCCCCTTGTTCTCAACTTTGAAGCACTTTTAGCCCAAAATCCTAACAACAAAAACTTTG TGTTTGGAAATGTTGGATGGCTTGAAGTCAATGAAATAGCTGTGAGAATAATCACCATGGTGGCTTTCTTGCTGCAGTTC CGTCTCCTTCAACTAACTTGGTCGTCGCGAAACGCGGATGAAAGCAAGAAAGGCCTATGGGTTGCTGAGAGGAAAAGTGC ATATGTGACTTTACCATTATATGCAGCAGGTTTATTGATTGCGGTGATGTTGTTGAAATTGAAAAATGGATCAACTTGGG AGAATGTGAAATCTTATGGTGGTTTTGTGTTGGATGGGTTTCTCTTGCCACAAATCGTGATGAACCTGTTTTCAAACATT AGGGAGATTAATGTTCTTTCATGTTCATTTTACTTTGGAACCACTTTTGTGAGATTGTTGCCACATGCCTATGATCTTTA CAGGGCTCATAACTATGCTCGTTTAGGTGATGCTCATAACTATGCTCGTTTAGGTGATGGATCATACTACTATGCAGATC CAAGTGCAGATTTTTACTCCACTTCTTGGGATATTGTCATTCCTTTGGGAGGTATCTTGTTTGCTATCATTATCTACCTG CAGCAACGTTTTGGTGCTCATTGTGTTCTGCCAAGCAGATTCAGAGGGTCAAATGTATATGAAAAGGTGCCTGTGGTGAC TGAATCTGAACTCTGAAGAAGAAGTTGAGGGATTTGGATTTTCTGCAGTAAAAAAAATCCTAAAGTCATGGAAGTCATGA CTTCATAGCATTCACCAAAAAAAGAGAGAGGATCTCAATTTTATGTGTATGATTGTCATTTTAAATTTCATCTATTTGAA CTTAATCCGACGGCTACCAAACAATGACCGTAATGAAGTTACGTTGATGACTTGTTGATAGATATACTCTTCAAAGATAA ATTTGTTAGCTATGAAGTTATTTTGGCAAGCAAATTTTTAGAGGACTTTTGGAAAATTGTGGTTTTTTATTTTTGAAATT TTTAAAATGATTTTGGAAAAAAAACAAATTCATATTACAATCAAGCACAAAGATGTCCCTGAATGATAGCTTGGTAAGAG CTGGGGACATATGAGTTGGGAGGGGAAAGTCCAAAGATCCATTCTTAAAAGTTGTAATTTATCTTTCAGAAGT
CDS sequence (LotjaGi3g1v0271900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGATGGATTCTCTTCTCTCCATCTTCTTTCTCTTCACTCTCTTCTCCTCCAACCTTTTCCCCACCTTTGCATCACA ACAACCCTCTTACAAAGACCACTGTGCTTCCATAATCCCAGAGTCAACTCCCAAGAACCCAACCCTCAAACCTTTTCCTC TTGGTGAACAGCACAAAGGTTACTTCACAGGAGGTGAGAGGATCATTGATGCCAGAACTTCATTGAACCGATACACCTTT TACCTTCAATACATGCAAGAAACTCACACCCCTGGCTTGTTCAAAATTCATGGTACTGTTTCATTTAGAAGCACCCCCAA CTCTGTTTATGTGAGGGGGAACTTCAGCTTTAGTACTAAAAGGTCAAGTTATGGGCAACGTCACCTCCATAGGAGTTACT TAACCTTCAAGCTTGATGGGTTCTGGTCTGAATCTTCAGGGAAGGTTTGCTTGGTTGGAAAAGGAAGTGGCTATTCCAGA ACAGGTAACACTCTTGATCTTGATGCTGTTTTTAAGCTTCAAAATGTCTTCAATGCTAGTAATGTAACTAGCTTGGTTAG TGGAAGCTTGGAGAGTTTTAGTACTAATTCTGACAAGGATGATGAGAGTTACTTTGAACCCATTTCGCTTTTGGTGTTTC CAAAAGCAAATTACAATTATACCTTGGATTCCTTTGAAAATGAGTTCTCTTCTGGGAAATTTTCTGAGCAGGGTTTATCA TCACTGAATTTATCAGATTCATTAAGCTTTTGCTCATATCCTCTCTCAAGGGAGTTGAGAAGACTCCAGTTAGAGTACTC TCATGAGTGCAATTCTTCTAAGAACTGCTCTCCTATTAGTGGTGGTTCTGGTCCACTTCCATCTCTGGTGTCTTTGAAAG GAATTGAATGTTCTTCTTCCACCAACAAGCATAGGTTGAGGGCTCTAGTTACATTTTCAAATATTAGTCAATATTGGATT AACCAAGATTTTAATCCCAAAACCATATTGGTAGGGGAGGGATGGTGGGATGAGAAGAGAAACACATTGTGTGTAGTTGC TTGCCGTATCATAGGCAAAGAATCATCCTTGGCGGGTACTCAAGTGGGTGATTGCTCAGTGAGATTTACATTGAGATTCT CTTCAATTTGGTCAATAAAAAACACTAATAGCTTAGTGGGGCAAATTTGGAGCAGAAAGGTTGCTAATGATCCAGGCTAC TTCAAGATGATCACAGTTAAAAACTATGATGATGGAAGGGTGGGGGAATTTCAAGCCTCAAAGTATGAGTATACACAGCT AGACAGAGTTAAGAAATCATGCCCAACAAACAAGAATGTGAAGAATCATGATAGATTATATCCAGATGCTGATTCTCAAA ACATGAGATTTGATATGAGAGTTACTGAATCAAAAAGAAGAGTAGCCTGGGGCTATTCATCTCCCTCTTCTGTTGGTGGT AAGGTTAAGGTACCTTCTAACTTTGTTAATTTCATTTCTAACTCAAGCTCTCAAACAGAAGTTCCTGATGTTCCAATCCG CACCAGTGGTAGCTTGTTTAACATTAGCTACAAGATTAGCATCTATTCTAATTACACATTACGCGACAAGAATTCAGTGT TTAACTTGTCCTCTGAGGATGTGAAGATTTCTGCAGAAGGTATCTATGATTCTGGAACAGGAACTTTGTGTATGATCGGT TGCCGGGATCTTCCCTCAAAGACACCAATAGCTGGCTCTGTGGACTGCGAGATTTTAGTGAAGTTTCAGTTCCCATCACT AGATGCAAAAGGTGAAAGCTACATTAAGGGAAGCATCGAAAGCACACGCAAAAAATCAGATCCTCTTTATTTCAGAAGTT TAGATCTTTCTTCAGCTGCATTTTACAGAGAAACAGCCCAAAAAGCTGTTTGGAGAATGGACATGGAGATCACCATGGTT CTGACATCAACCACTCTAGCATGTATTTTTGTGGGATTGCAACTCTTCCATGTGAAGAGGAACCCTGATTTACTACCCTT CATCTCCCTCATGATGATGTCAATTCTAACGTTAGGTCACATGATCCCCCTTGTTCTCAACTTTGAAGCACTTTTAGCCC AAAATCCTAACAACAAAAACTTTGTGTTTGGAAATGTTGGATGGCTTGAAGTCAATGAAATAGCTGTGAGAATAATCACC ATGGTGGCTTTCTTGCTGCAGTTCCGTCTCCTTCAACTAACTTGGTCGTCGCGAAACGCGGATGAAAGCAAGAAAGGCCT ATGGGTTGCTGAGAGGAAAAGTGCATATGTGACTTTACCATTATATGCAGCAGGTTTATTGATTGCGGTGATGTTGTTGA AATTGAAAAATGGATCAACTTGGGAGAATGTGAAATCTTATGGTGGTTTTGTGTTGGATGGGTTTCTCTTGCCACAAATC GTGATGAACCTGTTTTCAAACATTAGGGAGATTAATGTTCTTTCATGTTCATTTTACTTTGGAACCACTTTTGTGAGATT GTTGCCACATGCCTATGATCTTTACAGGGCTCATAACTATGCTCGTTTAGGTGATGGATCATACTACTATGCAGATCCAA GTGCAGATTTTTACTCCACTTCTTGGGATATTGTCATTCCTTTGGGAGGTATCTTGTTTGCTATCATTATCTACCTGCAG CAACGTTTTGGTGCTCATTGTGTTCTGCCAAGCAGATTCAGAGGGTCAAATGTATATGAAAAGGTGCCTGTGGTGACTGA ATCTGAACTCTGA
Protein sequence (LotjaGi3g1v0271900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVMDSLLSIFFLFTLFSSNLFPTFASQQPSYKDHCASIIPESTPKNPTLKPFPLGEQHKGYFTGGERIIDARTSLNRYTF YLQYMQETHTPGLFKIHGTVSFRSTPNSVYVRGNFSFSTKRSSYGQRHLHRSYLTFKLDGFWSESSGKVCLVGKGSGYSR TGNTLDLDAVFKLQNVFNASNVTSLVSGSLESFSTNSDKDDESYFEPISLLVFPKANYNYTLDSFENEFSSGKFSEQGLS SLNLSDSLSFCSYPLSRELRRLQLEYSHECNSSKNCSPISGGSGPLPSLVSLKGIECSSSTNKHRLRALVTFSNISQYWI NQDFNPKTILVGEGWWDEKRNTLCVVACRIIGKESSLAGTQVGDCSVRFTLRFSSIWSIKNTNSLVGQIWSRKVANDPGY FKMITVKNYDDGRVGEFQASKYEYTQLDRVKKSCPTNKNVKNHDRLYPDADSQNMRFDMRVTESKRRVAWGYSSPSSVGG KVKVPSNFVNFISNSSSQTEVPDVPIRTSGSLFNISYKISIYSNYTLRDKNSVFNLSSEDVKISAEGIYDSGTGTLCMIG CRDLPSKTPIAGSVDCEILVKFQFPSLDAKGESYIKGSIESTRKKSDPLYFRSLDLSSAAFYRETAQKAVWRMDMEITMV LTSTTLACIFVGLQLFHVKRNPDLLPFISLMMMSILTLGHMIPLVLNFEALLAQNPNNKNFVFGNVGWLEVNEIAVRIIT MVAFLLQFRLLQLTWSSRNADESKKGLWVAERKSAYVTLPLYAAGLLIAVMLLKLKNGSTWENVKSYGGFVLDGFLLPQI VMNLFSNIREINVLSCSFYFGTTFVRLLPHAYDLYRAHNYARLGDGSYYYADPSADFYSTSWDIVIPLGGILFAIIIYLQ QRFGAHCVLPSRFRGSNVYEKVPVVTESEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 904 | 904 | 0.0 | ||
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 904 | 904 | 0.0 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Phobius | 26 | 636 | 611 | - | – | |
| Pfam | 32 | 889 | 858 | 2.3E-266 | ||
| TMHMM | 635 | 657 | 23 | - | – | |
| Phobius | 637 | 657 | 21 | - | – | |
| Phobius | 658 | 663 | 6 | - | – | |
| TMHMM | 664 | 686 | 23 | - | – | |
| Phobius | 664 | 686 | 23 | - | – | |
| Phobius | 687 | 713 | 27 | - | – | |
| TMHMM | 714 | 733 | 20 | - | – | |
| Phobius | 714 | 735 | 22 | - | – | |
| Phobius | 736 | 755 | 20 | - | – | |
| TMHMM | 754 | 773 | 20 | - | – | |
| Phobius | 756 | 775 | 20 | - | – | |
| Phobius | 776 | 786 | 11 | - | – | |
| Phobius | 787 | 805 | 19 | - | – | |
| Phobius | 806 | 811 | 6 | - | – | |
| Phobius | 812 | 832 | 21 | - | – | |
| Phobius | 833 | 856 | 24 | - | – | |
| TMHMM | 857 | 879 | 23 | - | – | |
| Phobius | 857 | 879 | 23 | - | – | |
| Phobius | 880 | 910 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0271900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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