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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0272000 |
| Transcript ID | LotjaGi3g1v0272000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2; TAIR: AT1G53025.1 Ubiquitin-conjugating enzyme family protein; Swiss-Prot: sp|Q8GY87|UBC26_ARATH Probable ubiquitin-conjugating enzyme E2 26; TrEMBL-Plants: tr|K7M2C4|K7M2C4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0272000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:52508010..52512302) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTTTACTTTAACACTCTTTTCTCTGTTGGTATTTTCCATATAATAATCATAATCATAGAACAATAACGCCCCGCGC GAACGTTCATTCTCCTCATCAGTCATCACTGATCACTCACTCTTTCTCTCTTGTGCAACAACTCCTTCATTCATGGAGGA CCCTAACGTCTTCAAGATTCCTCCCCCACTTCACCCCACTTCAACATTCCAAATGCAGAACCAGGTTTTCTCCTCCCATC AATTCACGCTTCTCTTTTTCCCTCAGGAATTTGATGGTGTTTATGTATTAATCATTGTAAGGGGTTAAAGGGTTTGTTTA ATTCTTCATTTTTTTCTTCTAGGGTCTCTAATTCATCCAAAGTTTTGATCTTTACTAAATTCCTAATCTGGGGTTTCACT TTTGAGCCCATGCCCTTCGTTTCCTTTTTTGACATGTTTTTCGTTTCTGCTTTTAAGTCATTGCTCTTGCTATTTTTGTT GTACTTCATTGCTGTTTGTTTCTGCATGCGTGTTTAGGTAGTACTGCGCCTTTGTCTAGTGTGTGTTTTCTATTATGATC ATACCGGGCTATGTTAAATTACTAATGCTATGCATTGCCTTTGGATAATTTGATTAAGGTTTGTGATCACTATTTTTCTA TGTTTTGTGAATGTTTCTATAATTCTTGTATTTTAATTTTCTAGGCCATTGTGCATGATGTGATTGACATTGACAACGAT GAAAACTCCAACGATGTAGTGATCGTTGGGGAAAAAGAAAGTAAACGTAACAAGGGGAAGGCAATTGCAGAAGCTTATAA TGGTTATGGAGATCATCAAGTAGTGGTTTGTGCATGATTTATTTTATTTCTTGCAGCAAATTGGTGTTATCTTTCCCTAC AGGAAAATGACTCTAACATTTTTCTTGGAACCCTTTTCAGGAAGTGTCTGATTATACTTTTTGTCAGTCTGGCGTGGAAA AAATTGGACCAGTTAGTGGTATTGAGTTTTCTAATGGTCATCCTTTGGTATCACATAATTTAATCTGTGCTGATGGCCAT GGTTGTGATCTAAAATGTGAAGATGATAATATCGGTGATATTGTTTCGGAAAATGTTGTGGATGTAGATAACTATGATTT ATTAGAGGCACACTTTTACAATGTGAATATACCTCCCGGGATTGAGGCACCTTTGCAGGAATATGACCGAGATTTGAAGC AGACTCGAAATAGTCATGTCATGGACTCCTCTCAGCCTTCTAGGTCATTAGAGCCTACTAACTCTAAAACGGACAATGTT GGTCACTCTTCTGGAACAGAGTTTGCTCCTCAATTATTTTCTCAAGCTGCCCCGAGTAAGAAGAAATCAGCTACATCACA GCAAAGTGGAGATGACTTGAATCTTTCATTAGGAAAAGAGTCATCTAAGTCTAAGTGGTCTTTTAAATCTTTCCACAGTA AAATGATGTCTTTCATTTCTTGTGCTTCAAAAAACCATGGTTTGGTTGACAAGCCAGAGGCCATGAAGTTGCCTAATGGT GCTAAGAAGTTAGCTGGCGGTAGCAGTTCATCCCATTCAAATTTCATTGGACATGATGGATCATTGCATCCTCCAGGTAT AGAATCAGAAAACCCTTCGTGGAAGAATCCTCCTAAATTTAAGCCATTATTTACTAATTATACTGCCTATCCAACTTATG ACCCATTTGATACTCTTGATACCCCTTCTGAACACGTGTTTGATGGCACTTGGGTTCACAATTTCAGCTAAAGATGGAAA TAATGGAATAGCTGTGGATGAAGTTGGAGATGAGATTCTGAGCAAATTCCGAAATTTCAAGCAATTTGACATAGTTGAAG ATGCTTCGGACCATTACTTTTTTAGTAATAATTCTTCTGTGAAGCAGGTAATTGTTTTTTATGAGCCACCTTGTTTCAGT TCAAATCTTGGTTCTATGGGTTTACAGTAGACTATTTTCTGAACAGAATCCACATACGTGGGCTAAAAAAATCCAGGATG ATTGGAAGATTTTAGAGAAGGATTTGCCAGGTGAATTTGTTTAGTGTTCCTGTTACAATATAGCTAGTAATATTTTCCAT TTCATATCTCATGAATTGCGTAATTTCATTTCAACTTGATAGAGCTGTACTGTGTGGGTCATCTGCAATCAGTGTGATTC TTTATGTAGAATCCCATCTATTGAAATGTTAGGATAGGATCCTGTCATATGCAAATTGCCCTGGCATATTTGTTTTTTTA ATGATATATCATTATGAGAAAGCTTATCAATTTTTTATTCTCAGTTGTGTCCAGATATTTGTTCTGAAATTTGAAATTAA GACGTAATAACTCTAAAGTTATGATGTGAATCTCCTATTTTGCAGCTTGCTTCTGGCATTTTGCTGAATCTCACTGTTTC TTTTACTATTCTTTTATCATCATCAGATTCAATATTTGTCAGAGTTTATGAATCAAGGATGGATCTCTTGAGGGCTGTGA TTATTGGAGCAGAAGGGACTCCTTACCATGATGGCCTTTTCTTTTTTGATGTTCACTTTCCTAGTAGCTATCCTAGTAAA CCACCGGTATGTGGTTGATTATCATTTTGTTCACTCTTTTTAATTTTAGCCTGACGAAAGGGACTTTTTTTTCTTGGCAG GATGTCCACTACCACGCTGGAGGTCTTCGGCTCAACCCAAATTTATATGCTTGTGGCAAAGTATGCCTTAGTCTACTTAA CACCTGGTCTGGCAGCAAGAAAGAGAAGTGGCTTCCAGGTGTTTCTACAATGCTACAAGTTCTAGTCTCTATACAAGGTC TTATCTTGAATACAAAGCCATACTTTAATGAGCCTGGATATGAAAGTTCGAAAGGTACACCAGATGGTGAAAAGAAGTCC CTGAAGTACAATGAGCAAACATTCATTCTATCATTGAAGACAATGATGTATAAGATAAAACAGCCTCCAAAGGTTTTATT CTAGTCTTGGTTCAATTCTTTTTTTTTTTTTTTATCTCTAGCAAGGTTGCTTTGCCATGTTTAGCGCTTGGGTGGTATTT TTGAAATGTGTTAAGGGGGACAACTAAGAAAGCAATACCTAGGCAAGCTTGTGCCTTTTAGAAAGTAATAGAGAGGACGA AAACAAAATACATTGTGTTACATTAGTTAGCATATTGGTTGATCCATTTCTGAAGCATATTCCCATGTACCTTTGATCGC AAATTCAACTGCACTAACTAGAGATTTTAAATATTGGTTAAAGACTGCTTCTTGATTTTGTTAATGTAGTTTGTTGATCT CTCCGCTCTCGTCACGTAAAGTGGACTAAGGATTGCCTTATACCCCATTTAAAATTTAATTGCTTTGCTTAACGGAGGCA GGTGTATCTCCTTAACTTGTACTTGTACCTTAAGGTTTTTATAGATCTTTATGCTTTTGTGTGTTATTGGCCTTAACTAC CATTGCCAATCATCAATAATGATGCTCTCTGTGTCTGATAAAACTCACATTTCTACTGCATCAGCATTCCTCGTTTGAAA TTTCGCTTGTCGTGCTCATCAATTAATGCCCACTGGTAGATTTTTTTTTTTTATGTGATGAAGACATTTGATACTGCCTA GGTCTTAAACTCACGAAAAATGAGAATCATGTAAATGAAAAACATGAGTGCTATGATATGAATTTTTTTTTTAATATATT ACTATTGTCTAAAATTTGTGTCTTCCTTTTTTGAGGTTCAAAATTTAACTGTTTAGAGGTATTTTTTTTGGTTTCAGAAT TTTGAGGACTTTGTTTTGGGGCATTTCCGCAGCCGAGGCCATGATATTCTGATGGCATGTAAAGCATACATGGAAGGTGT TCAAATTGGAGGTGTAGTCAAAGGTGGGGTTCAGGATGTTCATGAGGTTAAGGGAAGCTGCTCAAAGAAATTTAAGAAGT CTTTACCTGGACATGTGAATAACCTCGTCAAAGATCTTGCAAAAATTGGAGCTAAGGACTGTGAGAATTTCATATTGATC AAGGCTAAAAAGTAAAACCTCAACATTCTTTTGAAAAAAGCAATTTGAGACTTGATAACCGTATCTAAGGTACCCCATAT CTAGTTATACACGCAGGTTTCTATTTTATGTCTAACAGTTAAACTTTCCTTATGAAGTATTTTATTTTCATGATCATGGA ACAATGCCACCCTGATCATTTTGTATAGACCATTATACCTGCAAAAGGTTTTAATACATTATTAGGTTGACATAAGATTC CACCCTGATCATTTTGTTCTGGCGTATTTTTCTTCTTATCAAGTAATTTGAGG
CDS sequence (LotjaGi3g1v0272000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGACCCTAACGTCTTCAAGATTCCTCCCCCACTTCACCCCACTTCAACATTCCAAATGCAGAACCAGGCCATTGT GCATGATGTGATTGACATTGACAACGATGAAAACTCCAACGATGTAGTGATCGTTGGGGAAAAAGAAAGTAAACGTAACA AGGGGAAGGCAATTGCAGAAGCTTATAATGGTTATGGAGATCATCAAGTAGTGGAAGTGTCTGATTATACTTTTTGTCAG TCTGGCGTGGAAAAAATTGGACCAGTTAGTGGTATTGAGTTTTCTAATGGTCATCCTTTGGTATCACATAATTTAATCTG TGCTGATGGCCATGGTTGTGATCTAAAATGTGAAGATGATAATATCGGTGATATTGTTTCGGAAAATGTTGTGGATGTAG ATAACTATGATTTATTAGAGGCACACTTTTACAATGTGAATATACCTCCCGGGATTGAGGCACCTTTGCAGGAATATGAC CGAGATTTGAAGCAGACTCGAAATAGTCATGTCATGGACTCCTCTCAGCCTTCTAGGTCATTAGAGCCTACTAACTCTAA AACGGACAATGTTGGTCACTCTTCTGGAACAGAGTTTGCTCCTCAATTATTTTCTCAAGCTGCCCCGAGTAAGAAGAAAT CAGCTACATCACAGCAAAGTGGAGATGACTTGAATCTTTCATTAGGAAAAGAGTCATCTAAGTCTAAGTGGTCTTTTAAA TCTTTCCACAGTAAAATGATGTCTTTCATTTCTTGTGCTTCAAAAAACCATGGTTTGGTTGACAAGCCAGAGGCCATGAA GTTGCCTAATGGTGCTAAGAAGTTAGCTGGCGGTAGCAGTTCATCCCATTCAAATTTCATTGGACATGATGGATCATTGC ATCCTCCAGCTAAAGATGGAAATAATGGAATAGCTGTGGATGAAGTTGGAGATGAGATTCTGAGCAAATTCCGAAATTTC AAGCAATTTGACATAGTTGAAGATGCTTCGGACCATTACTTTTTTAGTAATAATTCTTCTGTGAAGCAGAATCCACATAC GTGGGCTAAAAAAATCCAGGATGATTGGAAGATTTTAGAGAAGGATTTGCCAGATTCAATATTTGTCAGAGTTTATGAAT CAAGGATGGATCTCTTGAGGGCTGTGATTATTGGAGCAGAAGGGACTCCTTACCATGATGGCCTTTTCTTTTTTGATGTT CACTTTCCTAGTAGCTATCCTAGTAAACCACCGGATGTCCACTACCACGCTGGAGGTCTTCGGCTCAACCCAAATTTATA TGCTTGTGGCAAAGTATGCCTTAGTCTACTTAACACCTGGTCTGGCAGCAAGAAAGAGAAGTGGCTTCCAGGTGTTTCTA CAATGCTACAAGTTCTAGTCTCTATACAAGGTCTTATCTTGAATACAAAGCCATACTTTAATGAGCCTGGATATGAAAGT TCGAAAGGTACACCAGATGGTGAAAAGAAGTCCCTGAAGTACAATGAGCAAACATTCATTCTATCATTGAAGACAATGAT GTATAAGATAAAACAGCCTCCAAAGAATTTTGAGGACTTTGTTTTGGGGCATTTCCGCAGCCGAGGCCATGATATTCTGA TGGCATGTAAAGCATACATGGAAGGTGTTCAAATTGGAGGTGTAGTCAAAGGTGGGGTTCAGGATGTTCATGAGGTTAAG GGAAGCTGCTCAAAGAAATTTAAGAAGTCTTTACCTGGACATGTGAATAACCTCGTCAAAGATCTTGCAAAAATTGGAGC TAAGGACTGTGAGAATTTCATATTGATCAAGGCTAAAAAGTAA
Protein sequence (LotjaGi3g1v0272000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDPNVFKIPPPLHPTSTFQMQNQAIVHDVIDIDNDENSNDVVIVGEKESKRNKGKAIAEAYNGYGDHQVVEVSDYTFCQ SGVEKIGPVSGIEFSNGHPLVSHNLICADGHGCDLKCEDDNIGDIVSENVVDVDNYDLLEAHFYNVNIPPGIEAPLQEYD RDLKQTRNSHVMDSSQPSRSLEPTNSKTDNVGHSSGTEFAPQLFSQAAPSKKKSATSQQSGDDLNLSLGKESSKSKWSFK SFHSKMMSFISCASKNHGLVDKPEAMKLPNGAKKLAGGSSSSHSNFIGHDGSLHPPAKDGNNGIAVDEVGDEILSKFRNF KQFDIVEDASDHYFFSNNSSVKQNPHTWAKKIQDDWKILEKDLPDSIFVRVYESRMDLLRAVIIGAEGTPYHDGLFFFDV HFPSSYPSKPPDVHYHAGGLRLNPNLYACGKVCLSLLNTWSGSKKEKWLPGVSTMLQVLVSIQGLILNTKPYFNEPGYES SKGTPDGEKKSLKYNEQTFILSLKTMMYKIKQPPKNFEDFVLGHFRSRGHDILMACKAYMEGVQIGGVVKGGVQDVHEVK GSCSKKFKKSLPGHVNNLVKDLAKIGAKDCENFILIKAKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 594 | 578 | 3.0E-179 | – | |
| PANTHER | 17 | 594 | 578 | 3.0E-179 | – | |
| MobiDBLite | 167 | 229 | 63 | - | – | |
| MobiDBLite | 169 | 229 | 61 | - | – | |
| Gene3D | 311 | 590 | 280 | 1.0E-85 | ||
| SUPERFAMILY | 335 | 514 | 180 | 2.69E-40 | ||
| CDD | 350 | 476 | 127 | 1.63875E-35 | ||
| ProSiteProfiles | 350 | 471 | 122 | 20.923 | ||
| SMART | 350 | 507 | 158 | 1.1E-20 | – | |
| Pfam | 352 | 475 | 124 | 5.8E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0272000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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