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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0272700 |
| Transcript ID | LotjaGi3g1v0272700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain protein; TAIR: AT3G07370.1 carboxyl terminus of HSC70-interacting protein; Swiss-Prot: sp|Q9SRS9|CHIP_ARATH E3 ubiquitin-protein ligase CHIP; TrEMBL-Plants: tr|I3SQ71|I3SQ71_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0272700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:52853075..52854025) extracted from Lotus japonicus Gifu genome v1.2.
ATACTTATTGTTCAAATGAATGATGATTCATATGTTGTCTTTGGTCATAACTCATAATTAAGGCTTTGGATCTTGGGAGG GGTGCTAATCCCAAGGGCTATATGGTAGAAGAGATATGGCAAGAGCTTGCGAAAGCAAAATACCAAGAGTGGGAGCGTTC ATCGACCAAGCGATCGTGGGAATTGCAGAGTTTGAAGTATGTTTTTCTGGTGATTGTCAGACCTATTATCTGAGGGTCTT TTATTAATGATTACTGATCAGTTATCTCTATCATATTTTTATTCATTACTCCCTAAGTTGTTTATTTTTGTTTAATATCA AATATTTATTGGGTTGTGAATATTTTTTATCATGTCAATTCTTATTATCCTAAAATGTGTTTGTTTCTCAGACAAGCATG TGAGTCTGCACTAAAGGAAAAACATTTTCTTGATGGCTCTGATATGGAAGGATTTGTAGATGATGCTACTACTACTCATT TGAAGCAATTAGAGGCTTTAGAAGGAGTCTTCAATAAAGCTGCTGAGGCTGACATACCTGCTGAGGTGTGTACATTTTTT CTTCTTGAGATTTTTTGCAGTGCTCTAGAAATATTAATCACTGGGATTGGCTTGTGGAGTCTATATAGGTCCCAGATTAC TTATGCTGTAAAATCACCCTTGACATTTTTCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAGAGGGCAGTGAT TCTTGACCATCTTCAGAAGGTAATGTGTTTTGTATGTTTCATCGCCTTTGAACAAATGTTTTCTATTTCCTTGAAGTCAG TGCAAACATCTAACTTCTGAAATAGGTTGGTAGATTTGACCCGGTCACGAGGGAACCACTTGATCCATCACAGCTAGTAC CGAACTTGGCCATTAAAGAAGCGGTCCAGGCATTCTTGGACACTCATGGGTGGGCTTACCAGATGGATTAA
CDS sequence (LotjaGi3g1v0272700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGAAGAGATATGGCAAGAGCTTGCGAAAGCAAAATACCAAGAGTGGGAGCGTTCATCGACCAAGCGATCGTGGGA ATTGCAGAGTTTGAAACAAGCATGTGAGTCTGCACTAAAGGAAAAACATTTTCTTGATGGCTCTGATATGGAAGGATTTG TAGATGATGCTACTACTACTCATTTGAAGCAATTAGAGGCTTTAGAAGGAGTCTTCAATAAAGCTGCTGAGGCTGACATA CCTGCTGAGGTCCCAGATTACTTATGCTGTAAAATCACCCTTGACATTTTTCATGATCCTGTAATCACTCCAAGTGGACT TACATATGAGAGGGCAGTGATTCTTGACCATCTTCAGAAGGTTGGTAGATTTGACCCGGTCACGAGGGAACCACTTGATC CATCACAGCTAGTACCGAACTTGGCCATTAAAGAAGCGGTCCAGGCATTCTTGGACACTCATGGGTGGGCTTACCAGATG GATTAA
Protein sequence (LotjaGi3g1v0272700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEEIWQELAKAKYQEWERSSTKRSWELQSLKQACESALKEKHFLDGSDMEGFVDDATTTHLKQLEALEGVFNKAAEADI PAEVPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQKVGRFDPVTREPLDPSQLVPNLAIKEAVQAFLDTHGWAYQM D
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 160 | 160 | 4.1E-73 | – | |
| PANTHER | 1 | 160 | 160 | 4.1E-73 | – | |
| SUPERFAMILY | 78 | 158 | 81 | 1.77E-26 | – | |
| Gene3D | 82 | 160 | 79 | 5.6E-27 | ||
| ProSiteProfiles | 83 | 157 | 75 | 34.933 | ||
| CDD | 84 | 150 | 67 | 5.50182E-45 | – | |
| Pfam | 84 | 156 | 73 | 2.8E-27 | ||
| SMART | 87 | 150 | 64 | 7.1E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi3g1v0272700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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