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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SM00504
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 158 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 0.063s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v1697430.1
LjCerebrus RecName: Full=Putative E3 ubiquitin-protein ligase LIN-1; AltName: Full=Protein cerberus] gi|353558931|sp|C6L7U1.2|LIN1_LOTJA chr5 24288104 24296633 +
2 domain predictions
2 GO terms
Lj0g3v0014579.1
n.a. PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Cicer arietinum] gi|502122252|ref|XP_004497654.1| chr0 5582216 5586027 +
2 domain predictions
2 GO terms
Lj0g3v0023039.1
n.a. PREDICTED: U-box domain-containing protein 20-like [Glycine max] gi|356553261|ref|XP_003544976.1| chr0 9239415 9240632 -
2 domain predictions
2 GO terms
Lj0g3v0044959.1
n.a. PREDICTED: U-box domain-containing protein 40-like [Glycine max] gi|356550235|ref|XP_003543493.1| chr0 14787045 14787524 +
2 domain predictions
2 GO terms
Lj0g3v0076489.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Cicer arietinum] gi|502174874|ref|XP_004515619.1| chr0 29166796 29174490 +
2 domain predictions
2 GO terms
Lj0g3v0087739.1
n.a. PREDICTED: E3 ubiquitin-protein ligase CHIP-like [Glycine max] gi|356558963|ref|XP_003547771.1| chr0 35710399 35721726 +
2 domain predictions
2 GO terms
Lj0g3v0125799.1
n.a. n.a. chr0 56558662 56561847 +
2 domain predictions
2 GO terms
Lj0g3v0188449.2
n.a. PREDICTED: U-box domain-containing protein 4-like [Cicer arietinum] gi|502129552|ref|XP_004500342.1| chr0 92100909 92112078 -
2 domain predictions
2 GO terms
Lj0g3v0200239.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357514475|ref|XP_003627526.1| chr0 98752758 98760421 -
2 domain predictions
2 GO terms
Lj0g3v0204029.1
n.a. PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Cicer arietinum] gi|502122250|ref|XP_004497653.1| chr0 101175101 101176461 -
2 domain predictions
2 GO terms
Lj0g3v0228029.1
n.a. Peptidyl-prolyl cis-trans isomerase-like protein [Medicago truncatula] gi|357482585|ref|XP_003611579.1| chr0 117861726 117862909 +
2 domain predictions
2 GO terms
Lj0g3v0267019.1
n.a. PREDICTED: U-box domain-containing protein 20-like [Glycine max] gi|356553261|ref|XP_003544976.1| chr0 138369527 138371748 +
2 domain predictions
2 GO terms
Lj0g3v0300219.1
n.a. PREDICTED: U-box domain-containing protein 33-like isoform X1 [Cicer arietinum] gi|502081919|ref|XP_004487010.1| chr0 155968328 155976601 +
2 domain predictions
2 GO terms
Lj0g3v0300339.1
n.a. PREDICTED: U-box domain-containing protein 5-like [Cicer arietinum] gi|502153254|ref|XP_004509274.1| chr0 156045330 156052030 +
2 domain predictions
2 GO terms
Lj0g3v0331289.1
n.a. PREDICTED: U-box domain-containing protein 8-like [Cicer arietinum] gi|502142430|ref|XP_004504954.1| chr0 173140640 173142964 +
2 domain predictions
2 GO terms
Lj0g3v0359289.1
n.a. PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Glycine max] gi|356543678|ref|XP_003540287.1| chr0 189153109 189154877 +
2 domain predictions
2 GO terms
Lj1g3v0415480.1
n.a. PREDICTED: U-box domain-containing protein 38-like [Cicer arietinum] gi|502133980|ref|XP_004501958.1| chr1 5320888 5323441 -
2 domain predictions
2 GO terms
Lj1g3v1008930.1
n.a. PREDICTED: U-box domain-containing protein 43-like [Glycine max] gi|356518651|ref|XP_003527992.1| chr1 12869719 12875003 -
2 domain predictions
2 GO terms
Lj1g3v1290370.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357519821|ref|XP_003630199.1| chr1 15383382 15384887 -
2 domain predictions
2 GO terms
Lj1g3v1329370.1
n.a. PREDICTED: U-box domain-containing protein 25-like [Glycine max] gi|356516368|ref|XP_003526867.1| chr1 16035162 16037671 -
2 domain predictions
2 GO terms
Lj1g3v1583620.1
n.a. PREDICTED: probable ubiquitin conjugation factor E4-like [Cicer arietinum] gi|502091085|ref|XP_004489437.1| chr1 19035101 19036232 +
2 domain predictions
2 GO terms
Lj1g3v1754610.1
n.a. PREDICTED: U-box domain-containing protein 30-like [Glycine max] gi|356554018|ref|XP_003545347.1| chr1 20475106 20477160 +
2 domain predictions
2 GO terms
Lj1g3v2739210.1
n.a. PREDICTED: U-box domain-containing protein 15-like [Glycine max] gi|356530052|ref|XP_003533598.1| chr1 31474305 31478297 +
2 domain predictions
2 GO terms
Lj1g3v2741270.1
n.a. PREDICTED: U-box domain-containing protein 15-like [Glycine max] gi|356530052|ref|XP_003533598.1| chr1 31514990 31518305 +
2 domain predictions
2 GO terms
Lj1g3v3329610.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357501435|ref|XP_003621006.1| chr1 37737416 37742410 +
2 domain predictions
2 GO terms
Lj1g3v3459850.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Cicer arietinum] gi|502174874|ref|XP_004515619.1| chr1 40194576 40202272 +
2 domain predictions
2 GO terms
Lj1g3v3590740.1
n.a. PREDICTED: U-box domain-containing protein 9-like [Glycine max] gi|356567779|ref|XP_003552093.1| chr1 41224523 41227552 -
2 domain predictions
2 GO terms
Lj1g3v4515400.1
n.a. PREDICTED: U-box domain-containing protein 3-like [Glycine max] gi|356572260|ref|XP_003554287.1| chr1 52872716 52877549 +
2 domain predictions
2 GO terms
Lj1g3v4752550.1
n.a. PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Glycine max] gi|356503852|ref|XP_003520716.1| chr1 56739621 56741689 +
2 domain predictions
2 GO terms
Lj1g3v5020920.1
n.a. PREDICTED: U-box domain-containing protein 9-like [Cicer arietinum] gi|502113800|ref|XP_004494763.1| chr1 61173643 61175993 +
2 domain predictions
2 GO terms
Lj2g3v0346240.1
n.a. PREDICTED: U-box domain-containing protein 32-like [Cicer arietinum] gi|502119238|ref|XP_004496550.1| chr2 5656521 5664827 -
2 domain predictions
2 GO terms
Lj2g3v0636850.1
n.a. PREDICTED: U-box domain-containing protein 21-like [Glycine max] gi|356522898|ref|XP_003530079.1| chr2 10377147 10378834 +
2 domain predictions
2 GO terms
Lj2g3v1020040.1
n.a. PREDICTED: U-box domain-containing protein 40-like [Glycine max] gi|356550235|ref|XP_003543493.1| chr2 15918016 15920723 -
2 domain predictions
2 GO terms
Lj2g3v1069200.1
n.a. PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max] gi|356551046|ref|XP_003543890.1| chr2 17359898 17380221 -
2 domain predictions
2 GO terms
Lj2g3v1069200.2
n.a. PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max] gi|356551046|ref|XP_003543890.1| chr2 17359898 17380221 -
2 domain predictions
2 GO terms
Lj2g3v1069200.3
n.a. PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max] gi|356551046|ref|XP_003543890.1| chr2 17359898 17376089 -
2 domain predictions
2 GO terms
Lj2g3v1391600.1
n.a. PREDICTED: U-box domain-containing protein 19-like [Cicer arietinum] gi|502093005|ref|XP_004489855.1| chr2 22066031 22068403 +
2 domain predictions
2 GO terms
Lj2g3v1455100.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357485505|ref|XP_003613040.1| chr2 22949180 22956108 -
2 domain predictions
2 GO terms
Lj2g3v1670870.1
n.a. PREDICTED: U-box domain-containing protein 40-like [Glycine max] gi|356550235|ref|XP_003543493.1| chr2 25984559 25985886 -
2 domain predictions
2 GO terms
Lj2g3v1734820.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357483491|ref|XP_003612032.1| chr2 26842879 26851044 -
2 domain predictions
2 GO terms
Lj2g3v1968380.2
n.a. Peptidyl-prolyl cis-trans isomerase-like protein [Medicago truncatula] gi|357482585|ref|XP_003611579.1| chr2 28672552 28674293 +
2 domain predictions
2 GO terms
Lj2g3v1980800.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357482529|ref|XP_003611551.1| chr2 28801745 28804717 +
2 domain predictions
2 GO terms
Lj2g3v2412460.1
n.a. PREDICTED: U-box domain-containing protein 4-like [Glycine max] gi|356499010|ref|XP_003518337.1| chr2 34236718 34242135 -
2 domain predictions
2 GO terms
Lj2g3v2794440.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Glycine max] gi|356499213|ref|XP_003518436.1| chr2 36759411 36762100 +
2 domain predictions
2 GO terms
Lj3g3v0201940.1
n.a. PREDICTED: U-box domain-containing protein 45-like isoform X1 [Cicer arietinum] gi|502135372|ref|XP_004502310.1| chr3 1293390 1297583 +
2 domain predictions
2 GO terms
Lj3g3v1282320.1
n.a. PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Glycine max] gi|356543678|ref|XP_003540287.1| chr3 16390175 16392327 -
2 domain predictions
2 GO terms
Lj3g3v1421800.1
n.a. PREDICTED: U-box domain-containing protein 16-like [Cicer arietinum] gi|502146392|ref|XP_004506434.1| chr3 18405235 18407914 +
2 domain predictions
2 GO terms
Lj3g3v1421810.1
n.a. PREDICTED: U-box domain-containing protein 16-like [Cicer arietinum] gi|502146392|ref|XP_004506434.1| chr3 18405235 18407914 +
2 domain predictions
2 GO terms
Lj3g3v2027260.1
n.a. PREDICTED: U-box domain-containing protein 40-like [Glycine max] gi|356550235|ref|XP_003543493.1| chr3 25863847 25864488 +
2 domain predictions
2 GO terms
Lj3g3v2938470.1
n.a. PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Glycine max] gi|356544768|ref|XP_003540819.1| chr3 36636425 36637929 -
2 domain predictions
2 GO terms