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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0274900 |
| Transcript ID | LotjaGi3g1v0274900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G17590.1 Putative membrane lipoprotein; Swiss-Prot: sp|Q8IN35|SIFAR_DROME Neuropeptide SIFamide receptor; TrEMBL-Plants: tr|G7LDI6|G7LDI6_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi3g1v0274900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:54243890..54244876) extracted from Lotus japonicus Gifu genome v1.2.
CTTCAATTTGTGCCTTGTTTGAAACTTTCTGTTCTATGATTCCTATCAAACCATTCTGTAGCTGCGTCATCCTCCAACAA AACACTTGAACGAAAGAGACAAAGAAAGAGAAAGAGAAAGAGAGAGGGGGGAGAGAGAAAGATTCTTATTAATTTCCCCA TCATCCTATTGATCTTCCTCTTCCATGGGAGATAGAAAAGGGGACGCTAGAATATATGTCATCTCTGTTTTATTCTTGGC ATGCACCATCGGTGGAGGAGTCCTCCTTTTCGTGTACATACGAGCCCCAGATTTAGAATCTGTAACGTTATATCTCATTG TTGGCATGACCTTGGTTGCAATTCCATGGCTGTTTTGGCTTCTCATCTACATGTATAGATGCTTTAGACCTGTAAATGTT CAATTTGATGAGAATCACCACAATCATATTGGTAATAGCAGAAAAGGGTCACCAAAATCTGGACTTACAACCTCTGTTAC CAGCCCTTATGGTGTGAAATCCTCTGATCATTCTCCTGCTTCTGGAGAGCGTCGCGTTCATTTTGGAGCAATTGTTGAGA TGGAGGATGGTTTTGGTGGTGGTGGTTGTGGCCTAGAAGACCGCTGCAAAGGTGATGCTGAGATGTTACAGCACCATGAG TTGAAGGAAGAACATGCTATACCATCATTAGTATTGGTTGAGCCTAGAGAAAGTGAATTGCCTTTAAAACCCTTACATTG CAAGCCTGAATCTTAGTGGATTCTTCTATTTATATGGTGTTATAACATGGATGTAGTTCTTTTAGTTGAATGCATTCATG GCAAGTAGACATTTTAACTCATAGAGGTCCTATTGTAGGAGATTGAAGGCCATGCATCCATGAGATGAAATGATAAATAG ATCAAAGTGAGATATAAACTTGATGAATGACTCAGAGCATAACATGTTTGGACTTGCTTATTTTTCCTCAATTAATTCTG ACACCTTGTAGCTATTCACAAAAGCAC
CDS sequence (LotjaGi3g1v0274900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGATAGAAAAGGGGACGCTAGAATATATGTCATCTCTGTTTTATTCTTGGCATGCACCATCGGTGGAGGAGTCCT CCTTTTCGTGTACATACGAGCCCCAGATTTAGAATCTGTAACGTTATATCTCATTGTTGGCATGACCTTGGTTGCAATTC CATGGCTGTTTTGGCTTCTCATCTACATGTATAGATGCTTTAGACCTGTAAATGTTCAATTTGATGAGAATCACCACAAT CATATTGGTAATAGCAGAAAAGGGTCACCAAAATCTGGACTTACAACCTCTGTTACCAGCCCTTATGGTGTGAAATCCTC TGATCATTCTCCTGCTTCTGGAGAGCGTCGCGTTCATTTTGGAGCAATTGTTGAGATGGAGGATGGTTTTGGTGGTGGTG GTTGTGGCCTAGAAGACCGCTGCAAAGGTGATGCTGAGATGTTACAGCACCATGAGTTGAAGGAAGAACATGCTATACCA TCATTAGTATTGGTTGAGCCTAGAGAAAGTGAATTGCCTTTAAAACCCTTACATTGCAAGCCTGAATCTTAG
Protein sequence (LotjaGi3g1v0274900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDRKGDARIYVISVLFLACTIGGGVLLFVYIRAPDLESVTLYLIVGMTLVAIPWLFWLLIYMYRCFRPVNVQFDENHHN HIGNSRKGSPKSGLTTSVTSPYGVKSSDHSPASGERRVHFGAIVEMEDGFGGGGCGLEDRCKGDAEMLQHHELKEEHAIP SLVLVEPRESELPLKPLHCKPES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 175 | 175 | 3.7E-46 | – | |
| PANTHER | 1 | 175 | 175 | 3.7E-46 | – | |
| ProSiteProfiles | 1 | 20 | 20 | 6.0 | – | |
| CDD | 10 | 64 | 55 | 3.71307E-4 | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 12 | 34 | 23 | - | – | |
| Phobius | 35 | 39 | 5 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 40 | 64 | 25 | - | – | |
| Phobius | 65 | 183 | 119 | - | – | |
| MobiDBLite | 81 | 114 | 34 | - | – | |
| MobiDBLite | 86 | 107 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0274900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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