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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0275500 |
| Transcript ID | LotjaGi3g1v0275500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT1G07850.1 transferring glycosyl group transferase (DUF604); Swiss-Prot: sp|Q2KJ92|LFNG_BOVIN Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TrEMBL-Plants: tr|G7IU85|G7IU85_MEDTR Transferring glycosyl group transferase; Found in the gene: LotjaGi3g1v0275500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:54623940..54628519) extracted from Lotus japonicus Gifu genome v1.2.
CAAGCATAACAAACTTCACATTCACAAAAAAACACAAAATCAAAACAAAATAGTAAAAAAATGATAACACTTAATACCCT TTTATGTGATCCAAACAATTCTGATCTGAGCTAGAAAATAGTAAATTAACAATCTCTTAGAAAATTGAATCAAGATCCCC AATAAGCAAAAAATTTCAGCTTTAATTGGAAAAAAACCAAATGAACTCTTCTTCCCATCAACGTATACTCTACAATGGCT TGAGAACCATCTTTACTTGGTTGATCCTCACCACCATTGTACTCTACATCCTTTATTCCACCAATTTTCTCCTCTTCAAC AATGACCAACAAGATTGCACCACTACCACCACAACCCATTTAGATGACACCATCACCAAAGAACCTCTTAAGATCACTAG TTACAACATATCACACACCTCTGAACAAAGACAACCACTAATAGAGAAAGATTCAAAGGAGGATGAAGAAGAAGAAGAAG AAGAAAAAGATCATACAGAACATGAACAAGAAGGGACAGACCCAGGTAGAGCTTTAAAAGCGCGCTTGCACCCCAAGAGA AAAAAAATCCTGGATAGAATAATACTTAAATGTTATTTTCGCCCCTTAACATTTTTATATTTCTTCTTTCAATTAGTGAT TGTTAATCTTCTCTAATGCGATAAATTTTCGCTTACCGTTTTTTCTGGTTATGTCCCTGTGAAGAAGAAGAACAAGAAGT ACAAGAAGAGGAAATAAAATCCCCTGTTGTGGTTCGGTTAACCCCTGAAGTGATGAAACACAGACATGAAACAGAGTTGA AACACATTGTTTTTGGGATTGCAGCTTCATCAAACTTGTGGCACATTAGAAAAGAGTACATCAAGACATGGTGGAGGCCT AAACAAACTAGAGGGGTTGTGTGGATGGATAAGCGTGTGCGAATCCAAAGAAACGAAGGGCTACCGGAGATAAGAATCTC TGGTGACACTTCAAGATTCAGGTACGTGAACCGCCAGGGGCAAAGGTCAGCATTGAGGATATCAAGGGTGGTGACAGAGA CACTAAAGCTTGGGTTGAAGGATGTGCGGTGGTTCGTGATGGGCGATGATGACACAGTGTTTATGGTTGATAATGTGGTT AGGATTCTTAACAAGTATGATCACAGGCACTTCTATTATGTTGGGAGTTCGTCGGAGAGTCATGTTCAGAACATACATTT TTCATATGCCATGGCTTATGGTGGGGGAGGATTTGCTATAAGCTATCCTTTGGCTATGGAGCTAGCAAAGATGCAGGATC GTTGCATTCAGAGGTACCCTGCTTTGTATGGAAGTGATGATAGAATTCAAGCTTGCATGGCTGAGCTCGGGGTACCACTC ACTAAGGAAGCTGGATTTCACCAGGTAAGATTCAAAGTGATTTTGCTCTTGAGGGTGTGGGATTCAAAAGATAAAGTAAG AAATTTTGATTAAGATAATGGCTATAAATTGGAAAATGGCTGGTAAATCGTAAGTGAGTGTATACACCCTCAATAATACG TCCAGGAAAAAGGGGATTAGAGAAAAGTTATGGATATTATATGATGTGACGTGTTAGAATGAGAGAGATAGAAAAGTGAA TTAAATGATACATGGGGTGAAAATATTATTTACACCACAACATTTTTTCTTTTTGCAACAGCTCAGAAATGTAGTCAAAG ATACGAAAAGTGTTTCCTAAACTTTACACCACATTTTTCGATTGTCTCATGTTCCAGTGTTACCTATTGCTTTTGGTAGC AACTTGTACTCTTTAACAATACTATGAAAAAATGTAACCTATTGTGTGGAATAAACAAAAATTATCACGTAATAACTAAT CCCTATTATAAAATAAGAACTTAGTGTTGTGATTGTGCTGCCTAAAACAAGCTCTTTATGGAATATGCGCAAACTGATCC TTGATGCATTTTAGGCAACACTTTTCGCCTGTTGCATAAATCAGTGTTACCAAAAGCATAAAATGGTGTAGTGTGAGTGT TTATATATTAGGATTTCCATCAATATTTAGCATAATTGGTAGATAAACGAGTCCCTTAAACTTATTAAGAGGTGTTTGAT CAATTAACATGTGTATGAAAAAGACTTTATTATGAGAGGTATAATTTAGATTTTCTCAACAAATTTTTGGCTACAACTAT TGTTCCGTGTAATTTTAACCATTGATTTTTGTAATTAATGGCTTATATTAATCTCAACAAAAATTAATATATCAAATTAG ATAGTTGATAGTGATGTGTATGATTGATGAGGCTAGAGAGGCAGTAGATGATCTGTATTCATGAGATTCTTAGGTGTCTA CAAATCAGAATTATCAACAAAATAGTTATTAGAAGGTAGAATAGTTGGTAAGAGTTTGATCTTTTTTCATGTATATGAAA AGTGCTTTGTTAGGAGGTACAAAAGCAACTTTTATGATCTCTTTATGTGGAAATGGATTAGTCTTTGACTATCTACTGAG GAAACTTTGGAACCCGTGAAATCAAGAACGAAAAAAAAACCAATTATACCCACTTTATTCTATAACTATTAATTCAAATT TCAAAAGAGGGATATTCAGTAATTAATAAATCCTTTTTTTCTCGCCTTAATGTTTAAACAATATTACCATTATAGGGACT AGTGCTTTGTGATTTTAATTCTCTTAGCTTGCTTATGCAGTATGATGTGTATGGAGACCTATTAGGCCTTCTAGGGGCAC ACCCGGTGGCTCCACTAGTGTCCTTGCACCACCTTGATGTGGTGCAACCAATATTCCCAAGGATGTCAAGAGCCCAATCC CTCAGGCACCTCATGGAAGCTGTGCACCATGACTCAGCCAGCATAATGCAACAATCAATTTGCTATGATAAGAGCAGGTA TTGTTATGAATCAATAATCCCAAAAGATCAAGTTGTTGGGTAAATAACATCTTAATATTTTTATATTATATTAGTAACAG GTATTGGTCAATATCTGTTTCGTGGGGCTATGTGGTTCAAATCCTGAGGGGAGTGTTGTCCCCGAGAGAACTAGAAATGC CATCAAGAACCTTTCTCAATTGGTACAAGAGAGCTGATTACACTGCATATGCATTTAACACAAGGCCTGTGGCTAAACAC CCTTGTCAGAAACCCTTTATTTACTACATGACCAATACTCATTATGATTCTAAGGCTAAACAAGTTGTTAGCACTTATGC TCGTGACAAGTATTCTAAATCTCCTTATTGCCGATGGAGAATGGATTCACCAGATAAAATCACTTCCATTGTTGTTACAA AGACTCCAGATCCTTTACGTTGGAAAAAGGTAGGGAACAAGAAAGACACACACAATCATTATGTACAATTCATTCTTATG TTTAAGTACATAGTGAATTGTCAAATTTGTTCCTTGAAAAATAGTTGGTCAATCACTTTAATATCCGAAAGATGAAAATT ATATGTCTTTTCATTCCTGAAAGATGAAAAAGACAAAGGACTAAATTGATGGCTTTTTCATGTTTAAAGGACAAAAATAT AATTTTCACCTTTTAGGGAGTAAATCGGCTGACCCAATAGCTTTCAAGGGATCAAAATCTTCTGTTGTTCTTATTTGATG TCCTCTTACTTGTTTCAACAATAAAATTGTGTTATGTCATTTAAAAACCTCACATATAAAGTTATGATAACTATCATATT CATATTCGTTTTTAATTAACATGACACAATTTTAAGAGAAGATGACATCAAACGATTATAGAAGATTTTAATTCCTTTTA GTTTTAGGGATCCAAGTTTATGGTTTACTCTTTAAATTTACATAATGGTATCATAATGAAATCTTATAGTTATATCCTTA TAATAGATATTCACAAATTTTGATGACATCCTAATTATCAAAATTATATGAAGTCCTTCATGTAATCATCGGTTTCTTTT GCAGTCACCAAGGAGGGACTGCTGCAGAGTTCTTCCATCACAACGTAAGGGCTCATCTATTCTGAACGTGTGGGTGGGAA ATTGTCGAGAGGGTGAAGTTACAGAGTTGTAGCATGTGAGTGCATATTTGTTTGTCTTGAATCACTGTTTGTTGTTCTTG TTCCTATTATATTTGAAGACATAGGGACAAACGAGTACGAAAAGTGGAAATGGAGCTTTGAATTATATTCGAAAGTCTAG CTTCTAATGGCACCAAAAACCACATAGAACACAAGCTTAACTATTATCTCTGGCCTGACCATAATGTCACATGGCAAGGT TTTGTCTTCTACAATTTTAGTTTTTTGCTTCTTTCCTCTGTGTAAATTAAACAAAGAACATTAGCAAATGTGATGGAGGG AACTAAGTACGTGTTTGGATACCAGTTTAGTACGATGTCAATGAACTTTCATTCCAACTCATTAGAAGAGTGATGTTCAC TTTTTGTTATGAGGTACGTGCTAAAGTTCATTTGCATTGGTGCCAACGAATATCCAAACATCTGCATTTAATAAAAAAGA AAAGGAGCTTAAGATGATATTTTAAGTTACGAGTGAAGGCCTCAAATTCAAAAGGCAAGACCATATATTCAGAGCTAATT TCACTAGATCTTGTTGTTTA
CDS sequence (LotjaGi3g1v0275500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTCTTCTTCCCATCAACGTATACTCTACAATGGCTTGAGAACCATCTTTACTTGGTTGATCCTCACCACCATTGT ACTCTACATCCTTTATTCCACCAATTTTCTCCTCTTCAACAATGACCAACAAGATTGCACCACTACCACCACAACCCATT TAGATGACACCATCACCAAAGAACCTCTTAAGATCACTAGTTACAACATATCACACACCTCTGAACAAAGACAACCACTA ATAGAGAAAGATTCAAAGGAGGATGAAGAAGAAGAAGAAGAAGAAAAAGATCATACAGAACATGAACAAGAAGGGACAGA CCCAGAAGAACAAGAAGTACAAGAAGAGGAAATAAAATCCCCTGTTGTGGTTCGGTTAACCCCTGAAGTGATGAAACACA GACATGAAACAGAGTTGAAACACATTGTTTTTGGGATTGCAGCTTCATCAAACTTGTGGCACATTAGAAAAGAGTACATC AAGACATGGTGGAGGCCTAAACAAACTAGAGGGGTTGTGTGGATGGATAAGCGTGTGCGAATCCAAAGAAACGAAGGGCT ACCGGAGATAAGAATCTCTGGTGACACTTCAAGATTCAGGTACGTGAACCGCCAGGGGCAAAGGTCAGCATTGAGGATAT CAAGGGTGGTGACAGAGACACTAAAGCTTGGGTTGAAGGATGTGCGGTGGTTCGTGATGGGCGATGATGACACAGTGTTT ATGGTTGATAATGTGGTTAGGATTCTTAACAAGTATGATCACAGGCACTTCTATTATGTTGGGAGTTCGTCGGAGAGTCA TGTTCAGAACATACATTTTTCATATGCCATGGCTTATGGTGGGGGAGGATTTGCTATAAGCTATCCTTTGGCTATGGAGC TAGCAAAGATGCAGGATCGTTGCATTCAGAGGTACCCTGCTTTGTATGGAAGTGATGATAGAATTCAAGCTTGCATGGCT GAGCTCGGGGTACCACTCACTAAGGAAGCTGGATTTCACCAGTATGATGTGTATGGAGACCTATTAGGCCTTCTAGGGGC ACACCCGGTGGCTCCACTAGTGTCCTTGCACCACCTTGATGTGGTGCAACCAATATTCCCAAGGATGTCAAGAGCCCAAT CCCTCAGGCACCTCATGGAAGCTGTGCACCATGACTCAGCCAGCATAATGCAACAATCAATTTGCTATGATAAGAGCAGT AACAGGTATTGGTCAATATCTGTTTCGTGGGGCTATGTGGTTCAAATCCTGAGGGGAGTGTTGTCCCCGAGAGAACTAGA AATGCCATCAAGAACCTTTCTCAATTGGTACAAGAGAGCTGATTACACTGCATATGCATTTAACACAAGGCCTGTGGCTA AACACCCTTGTCAGAAACCCTTTATTTACTACATGACCAATACTCATTATGATTCTAAGGCTAAACAAGTTGTTAGCACT TATGCTCGTGACAAGTATTCTAAATCTCCTTATTGCCGATGGAGAATGGATTCACCAGATAAAATCACTTCCATTGTTGT TACAAAGACTCCAGATCCTTTACGTTGGAAAAAGTCACCAAGGAGGGACTGCTGCAGAGTTCTTCCATCACAACGTAAGG GCTCATCTATTCTGAACGTGTGGGTGGGAAATTGTCGAGAGGGTGAAGTTACAGAGTTGTAG
Protein sequence (LotjaGi3g1v0275500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSSSHQRILYNGLRTIFTWLILTTIVLYILYSTNFLLFNNDQQDCTTTTTTHLDDTITKEPLKITSYNISHTSEQRQPL IEKDSKEDEEEEEEEKDHTEHEQEGTDPEEQEVQEEEIKSPVVVRLTPEVMKHRHETELKHIVFGIAASSNLWHIRKEYI KTWWRPKQTRGVVWMDKRVRIQRNEGLPEIRISGDTSRFRYVNRQGQRSALRISRVVTETLKLGLKDVRWFVMGDDDTVF MVDNVVRILNKYDHRHFYYVGSSSESHVQNIHFSYAMAYGGGGFAISYPLAMELAKMQDRCIQRYPALYGSDDRIQACMA ELGVPLTKEAGFHQYDVYGDLLGLLGAHPVAPLVSLHHLDVVQPIFPRMSRAQSLRHLMEAVHHDSASIMQQSICYDKSS NRYWSISVSWGYVVQILRGVLSPRELEMPSRTFLNWYKRADYTAYAFNTRPVAKHPCQKPFIYYMTNTHYDSKAKQVVST YARDKYSKSPYCRWRMDSPDKITSIVVTKTPDPLRWKKSPRRDCCRVLPSQRKGSSILNVWVGNCREGEVTEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 7 | 553 | 547 | 0.0 | – | |
| PANTHER | 7 | 553 | 547 | 0.0 | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| TMHMM | 13 | 32 | 20 | - | – | |
| Phobius | 33 | 553 | 521 | - | – | |
| MobiDBLite | 67 | 120 | 54 | - | – | |
| Coils | 82 | 102 | 21 | - | – | |
| Gene3D | 129 | 339 | 211 | 1.5E-11 | – | |
| Pfam | 269 | 525 | 257 | 5.8E-118 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0275500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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