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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0279100 |
Transcript ID | LotjaGi3g1v0279100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT5G02600.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q8LDS4|NAKR1_ARATH Protein SODIUM POTASSIUM ROOT DEFECTIVE 1; TrEMBL-Plants: tr|A0A151TN36|A0A151TN36_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0279100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:55775107..55776651) extracted from Lotus japonicus Gifu genome v1.2.
TATTACACTAAAGCAACCACTTATTAGTCAACTGCTAGAGAGGGCAATAATGGTATGGAAAAGTTTTCCTTTTTCCCTCC CCTACTCCATGAAGTTCAAAATTAAAAGCAAGTTTGGTTGGTACTTAAATTGGTTTCATTGGGAAGGTCTTTCTCCCAAC ACTTTCATCCTTAATTAGTTCTCTCTTCATTCTCCACTACTTAGCAAGAAGTTGCTCCAAACTCAGAAATCACTGCCATG AAAGGAATGGATCTGTTCTGTTCTTCATCTGCTTCCACAGCAGTAAACTCCAGCACATACCATCGTTCCGTGGCACGTAA AAGCACCAAAAGGCATGGCAGTGTTAGAAGGAAAAGCCAACTTCATGTCCCTTGTTCATCCAAATTACCCATCAATCCTA AGCCTCACCATGAGAAGCAAAGAAAAAGCTCAACAGATAAGCAAAACAGTGACATAAGTAGAAAAAACTCAGTGACTAAG TATCTCCTCAGTGACATACCCTTCATTGATTGGGTGTCTGAGTCTGTTAAAATCTCAGCAATGGTTCCTACTCAAGTAAC TCAACCTTCACACAAGCCCACCCAAGACCAGGTACTTAAGAGAAACATACTAATTTCAAGTTCTTTTTTTTTCTCAAAAA AAAAAATTAAAAGCTTGCTTTCTAAGTTAAATACAATCATGTTTGGATATGGTCTAGAGATCACTTATTGGAGCTTATCT ACTAGGAAAAAGCACTTAAAAAATTCCAATAAGTGCTTTTTGCTCCACACCCAAATAGTCTTAATGATGATGAATGGCAA CTTCAATCTGTTTTGTTTTGAAATCTTAAACAGGTTGTGGTTTTGAGGGTGTCATTGCACTGCAAGGCCTGTGTAGGGAA AGTTAGGAAGCACATTTCAAAAATGGAAGGTCAGTTTATCTTATAGCTATAACTTCCACATTCTTGAGCTGCTAAAATTT TAAAAACCAAACTTGATGGTAAGTGGTAATCATATGTATCAATATTCCATATATTGTAATATATCAATGCAGGGTTTGAT TTGTGGGTTTTCTGGGTTTTCCACTAATTAGGAGTGTTAAATTTCATGTTGATGCAAGTAAATTATGCAATTGACAAATT ATGTGCAGGAGTAACATCATTCAGTATAGATATGGAGGCAAAGAAAGTAACAATCATCGGTCGCGTGACGCCATCCGTGG TTCTGGCAAGTGTCTCCAAGGTGAAGAATGCACAGCTGTGGCCATCTCCAATATCATCATGTCCATCATTGCCTTCACCT ATCCCAACATCTAGATTGGTCAACATGAGTTATTAATTAGCATAACTTCTTGAAATCCCAATTCTTCCCCAGCACCACCT CCTTTTATCTGTCTTGTTTTCTGTTGTTTGGTACAACTATGCCGAAGTGAATGTGTTTGTTGATTAGAAATGTGATGACC TATCAAGCTTGTAATGTTTGCAGATTAAAAAATCTCCCCTATTAGATGAGTGAATGGAATGCAGCTTTTTCTTGTCGTTT AGTGTTTATTTATTACTGAAGTAGA
CDS sequence (LotjaGi3g1v0279100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGAATGGATCTGTTCTGTTCTTCATCTGCTTCCACAGCAGTAAACTCCAGCACATACCATCGTTCCGTGGCACG TAAAAGCACCAAAAGGCATGGCAGTGTTAGAAGGAAAAGCCAACTTCATGTCCCTTGTTCATCCAAATTACCCATCAATC CTAAGCCTCACCATGAGAAGCAAAGAAAAAGCTCAACAGATAAGCAAAACAGTGACATAAGTAGAAAAAACTCAGTGACT AAGTATCTCCTCAGTGACATACCCTTCATTGATTGGGTGTCTGAGTCTGTTAAAATCTCAGCAATGGTTCCTACTCAAGT AACTCAACCTTCACACAAGCCCACCCAAGACCAGGTTGTGGTTTTGAGGGTGTCATTGCACTGCAAGGCCTGTGTAGGGA AAGTTAGGAAGCACATTTCAAAAATGGAAGGAGTAACATCATTCAGTATAGATATGGAGGCAAAGAAAGTAACAATCATC GGTCGCGTGACGCCATCCGTGGTTCTGGCAAGTGTCTCCAAGGTGAAGAATGCACAGCTGTGGCCATCTCCAATATCATC ATGTCCATCATTGCCTTCACCTATCCCAACATCTAGATTGGTCAACATGAGTTATTAA
Protein sequence (LotjaGi3g1v0279100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGMDLFCSSSASTAVNSSTYHRSVARKSTKRHGSVRRKSQLHVPCSSKLPINPKPHHEKQRKSSTDKQNSDISRKNSVT KYLLSDIPFIDWVSESVKISAMVPTQVTQPSHKPTQDQVVVLRVSLHCKACVGKVRKHISKMEGVTSFSIDMEAKKVTII GRVTPSVVLASVSKVKNAQLWPSPISSCPSLPSPIPTSRLVNMSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 196 | 196 | 2.6E-61 | – | |
Phobius | 1 | 5 | 5 | - | – | |
Phobius | 1 | 18 | 18 | - | – | |
PANTHER | 1 | 196 | 196 | 2.6E-61 | – | |
Phobius | 6 | 13 | 8 | - | – | |
Phobius | 14 | 18 | 5 | - | – | |
MobiDBLite | 15 | 75 | 61 | - | – | |
Phobius | 19 | 205 | 187 | - | – | |
MobiDBLite | 25 | 39 | 15 | - | – | |
MobiDBLite | 53 | 70 | 18 | - | – | |
Gene3D | 115 | 179 | 65 | 1.1E-14 | – | |
ProSiteProfiles | 118 | 175 | 58 | 10.234 | ||
SUPERFAMILY | 118 | 175 | 58 | 6.81E-13 | ||
CDD | 121 | 174 | 54 | 5.53168E-11 | ||
Pfam | 122 | 174 | 53 | 2.7E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi3g1v0279100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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