Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0279800.1

Overview

Field Value
Gene ID LotjaGi3g1v0279800
Transcript ID LotjaGi3g1v0279800.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase; TAIR: AT5G59750.1 monofunctional riboflavin biosynthesis protein RIBA 3; Swiss-Prot: sp|Q9FN89|RIBA3_ARATH Monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic; TrEMBL-Plants: tr|K7M9H6|K7M9H6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0279800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:55980899..55985102) extracted from Lotus japonicus Gifu genome v1.2.

GTAATTTTGAAAGTTCAGGGACGAAGTTGAAGGCGGTTAACACTTTTAGAGACCAAGTTGTCTATTTACCCAAAAAAAAA AAAAAAAAAAAAAAAATAACGTGGTGGTTTCTTAGCATGGCTAAAGTACAGCTAGAAATAGAAATTTTGGACAAAGGTTC GATGTGGAAGCTCATCCATAACTAGAGGTGGAATTTTTTTTCCTGTTTTCCTTCTATCTTGTGCTCGACATAAATCCAGA ACATGAACTTATGAGTGTGTTACTTTTTTCAGTTTAGATTAAATTTTGAAGTTGCAGCCTATGGACTCTGCTTCATTCCC TCATCCTTTGATTTCCCAAGTCATCACCAGCTCAAGGTACTATCTTTCTCTACATAGCAATGCACTATAGTTCTTTTCGC TGACTATTCTTTATTCACAGTTTTCATCGCTCCTACCCAAATCATCAGAGTGCAAGATTCAGCCTTTGGAATAATAGGTT GTGGAATTCAGCTCTTTGTGCTACTGGGTACTCAGCAGCTGGAATAGAAGACGTGTTCGATGATAGTAACTTGAAGAGAA ATGACAATGGATCCTTCTTTGGTGCCTTAGCACCATTTGAAACGTTAAAAGCTGAAATAACGCCAGAAACAAATGACTTC TTTGTTAGTGATGCTGAAGGTGATCCAGATTGTCCCTCTGAAGGGTACTCTTCCGTTGAGCAGGCCCTTAATACACTACG CCAAGGAAAGGTTGGTTTTACAATCGGTCATAATGTGTTATAGCATGTTCCTATCAGCTTCTCTTTTCTCAAAATCAATT CTGACACAAAAGAGTTTCTTAGACATGTTTCTCCTCAGAATTGATTTTGACTTTAGAATCAATGATTTATAAACATGCAT TTAGTGGTACCGTAACACACTCTTAATATATGAGTATGATAGGCAAATAACATGTTTTTATATAGCATGTTTTGTTTCAC AGTTAAATCTTCTAGAATTACTTCTAGTTAGGAGCTACTAGTCTTAGCTTCAGGAAAAACATGCTTTGAATTCTGTGCAA ATTGTAAAATCAAACACCTACTTAGTGCTACAAAAACACACTCTTAAATGAGTATGATATGCAAATAAACATGTTTTTGT TCACTTTTATATTCAGTAAAAGGTTAATCTAACAACTAGCGTACCTTATTTTATTTTCTAGTTTGTGATTGTGGTAGATG ATGAAAATGGGGATATTCAAGGAAATCTCATAATGGCTGCATCTCTTACTAGTACCAAGGATGTGGCCTTTATGGTTAAG CATGGATCAGGTATTGTGTCCGTTGGCATGAAAGAGGAGGATCTTCAAAGACTGAACCTTCCCCTTATGTCACCAGAGAC CGAAGACGAGGATTCTTCTGCCCCCACCTTCACTATCACCGTGGTGAGTACCAAATTCTTTTAGTGTATGTTTAGAAATT CTTCTAGAATTGGTTCTAAAGTCGAAATACATTGTGTGAAGAAGTTAACGTGAGTAGCTTCTAATGTCAGAATTGAACTC CGTGGAAAGAAAAATTGATTCAAATATGCTACTATTATATTTGGATTAACTTCTTTTCTTTCTCTGAGAATCGATTCTCT TGCATAGAAACTACTGATTGAAGCTTTTCTCAGAATTGATTTTGACTTAAAATGTGTTTCCACAATACGTTCAAGCTTCA TATAACAAATTATCTTAGATTGATGTATGGATGTGAAGCTTACAAGGAGGCATTTGAGATTGTCAAACTCTGTCGTTGTA GGATGCAAAATATGGAACCTCCACAGGTGTATCAGCTGCAGATAGAGCAAAAACAGTTCTTGCTTTGTCATCTCCTGTGT CTACATCAGAAGACTTCATCAAGCCAGGTCATGTGTTTCCCCTCAAGTATAGAAATGGTGGGGTTCTTAGGAGGGCAGGT CATACTGAGGCTTCTGTTGATTTAGTTACTCTTGCTGGCTTGTCCCCAGTTTCTGTTCTTACGGCTCTTGTTGATGAAGA TGGTGGCTCTATGGCATCTTTGCCCTATTTAAGAAAATTAGCATTCGAATACAGCATACCAATTGTTTCCATAACTGATT TGATAAGGTAAGAGTAGAGTATGTTTGGTGTGTGCAAGTGTTAGAATCGATTCTTCATTATCAAAATGAGCGTGTGTTTG AAAACTCGTTCGAAAACTTGAAGTAACCAAAATGATAGTGGACAGAAGCAAAAGCTAAGGGAAGTTGCTTCCTTTTACCG TGATTTTGGCTACATCGTCATTTTCGGAAGAGTTTCCAAAAATGCACTTGATTTTTTGGTGTTTAGTTGTTTCCTTTCAC ATTTAAATATTTGATTCTAGCTCCAAAATCAATTCTGGGATTAAGTTACAAATCCTAGCTTCTCGGATTGACATAATTAA TTCTGAGATTTCACAATTGGACTTCACAACATTAGCCCATAAAAATCACTTTTCTTATAGATGTCACTTCACTTTCAACT CATTTTTATCACAATCAGTTCTGTCAACATCAATTCTATTCAAAATCAACTCTGACAACCCTGACCAAAACACATATTAA GTAGTTAGGCAGACATAGTTTCACCATACCTTCACTTTTGAGAAACAATAAGCAACTTCGGTTCCTTCTTCCTATGTCAG TAGTTCTGCTTACTGCATTGAACAGTTGGCTTTCTTCTGATTTATAAGCTAATCAAATTCACCTAAATGATGTGACTGTA TATACTGCTAAGGTACCGGAGAAAGCGAGAAAAGTTGGTTGAAAGAACTTCTGTTTCTCGTCTGCCTACAAAGTGGGGTT TATTTCAAGCATATTGCTACCGCTCAAAGTTGGATGGAACAGAACACATAGCTATTGTGAAGGTAAGAAATATTTATTTA GAGAAGAAATTTATAAGAGAAAGAAAGAGAAGACTGTAATGTGAAATTTGAATCATAGCTTTGCTAACTGATTTCTTAAG GGTGTATATATACAAATGGTTCTAAAGTGAAAAGTCAGAATCAATTTCTGTGAAGAAGCTACAATGAGTAGCTTCTAGGT TCCAAAGTTGATTCAAAAGAGAAGTCGAATCTGTTATTAGCTACTTGTTTTATATATTCTAAGTGATCAACTTACATGCA TAGGGAGACATAGGAGATGGGCAAGATGTCCTTGTGCGAGTACATTCAGAATGTTTAACAGGAGATATTTTTGGATCAGC TCGGTGTGACTGTGGCGACCAGTTAGATTTGGCAATGAGACTGATCGAAGAAGCAGGTAGAGGAGTAGTTGTCTATCTTC GAGGTCATGAGGGAAGAGGCATTGGACTTGGTCACAAACTTAAGGCCTATAATTTGCAGGATCAAGGCCATGACACAGTT CAGGCAAACATAGAATTGGGGTTAGCTGTTGATGCTCGTGAATATGGGATTGGTGCCCAGGTCAGATTTATCCATCATTG TTGCTTCTAGTGTGTGTTTTACTTTCAACGTGTTTGAGGCACACTCTAAACCACTTAGATATTGTGTTTCTTTTATAGTA TATTATGTTAGTGAACCCTTCCTGTGATTGCATTTAATTTGAGGAATTTATATGGATGCTTGATGATTTATTTTAAGCAT CCTTCAAGAACTGTTAAGTTTAATGTTACAAAATAAGCTGATTTTATATCCTGGTGCTGACAAATAACCATGAAGTATGC AGATTCTGGGGGATATAGGAGTTAGAACTATGAGGCTAATGACTAACAACCCAGCAAAGTTCACTGGTCTCAAAGGGTAT GGTTTGGCAGTGCTAGGGAGGGTTCCTGTAATGACACCAATTACTGAGGAAAACAAGAGGTACCTGGAAACAAAAAGGAC CAAAATGGGACATGTTTATGGGTCTGATATACAAGGATCGTTACCTGGATTCAACAATTCAATTGTAAATGACCAAGACT TACCAGAGAACACTTAGCGCACACATGTTTGGGGATCTTTCTATAATTTATTTTATTGGCAAACTCCATTCTGGTTAGAA GAAGCTTGTGTGAGTAGCTTCTGAGCATAATCCGAGAAGATAGAAGCTGATCATAACATATGTGTTGATAGTCTATACAA AAATACAACAGGGAAAAAAACTTTATACACTATTGAAAAAAATTAAAGGATGAAATTCATTTGTGAAGATTGTAATTAGC TCACTCTATGTAAATTTTGGTACTCATAAGCTTCAAATTACCAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0279800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTCTGCTTCATTCCCTCATCCTTTGATTTCCCAAGTCATCACCAGCTCAAGTTTTCATCGCTCCTACCCAAATCA TCAGAGTGCAAGATTCAGCCTTTGGAATAATAGGTTGTGGAATTCAGCTCTTTGTGCTACTGGGTACTCAGCAGCTGGAA TAGAAGACGTGTTCGATGATAGTAACTTGAAGAGAAATGACAATGGATCCTTCTTTGGTGCCTTAGCACCATTTGAAACG TTAAAAGCTGAAATAACGCCAGAAACAAATGACTTCTTTGTTAGTGATGCTGAAGGTGATCCAGATTGTCCCTCTGAAGG GTACTCTTCCGTTGAGCAGGCCCTTAATACACTACGCCAAGGAAAGTTTGTGATTGTGGTAGATGATGAAAATGGGGATA TTCAAGGAAATCTCATAATGGCTGCATCTCTTACTAGTACCAAGGATGTGGCCTTTATGGTTAAGCATGGATCAGGTATT GTGTCCGTTGGCATGAAAGAGGAGGATCTTCAAAGACTGAACCTTCCCCTTATGTCACCAGAGACCGAAGACGAGGATTC TTCTGCCCCCACCTTCACTATCACCGTGGATGCAAAATATGGAACCTCCACAGGTGTATCAGCTGCAGATAGAGCAAAAA CAGTTCTTGCTTTGTCATCTCCTGTGTCTACATCAGAAGACTTCATCAAGCCAGGTCATGTGTTTCCCCTCAAGTATAGA AATGGTGGGGTTCTTAGGAGGGCAGGTCATACTGAGGCTTCTGTTGATTTAGTTACTCTTGCTGGCTTGTCCCCAGTTTC TGTTCTTACGGCTCTTGTTGATGAAGATGGTGGCTCTATGGCATCTTTGCCCTATTTAAGAAAATTAGCATTCGAATACA GCATACCAATTGTTTCCATAACTGATTTGATAAGGTACCGGAGAAAGCGAGAAAAGTTGGTTGAAAGAACTTCTGTTTCT CGTCTGCCTACAAAGTGGGGTTTATTTCAAGCATATTGCTACCGCTCAAAGTTGGATGGAACAGAACACATAGCTATTGT GAAGGGAGACATAGGAGATGGGCAAGATGTCCTTGTGCGAGTACATTCAGAATGTTTAACAGGAGATATTTTTGGATCAG CTCGGTGTGACTGTGGCGACCAGTTAGATTTGGCAATGAGACTGATCGAAGAAGCAGGTAGAGGAGTAGTTGTCTATCTT CGAGGTCATGAGGGAAGAGGCATTGGACTTGGTCACAAACTTAAGGCCTATAATTTGCAGGATCAAGGCCATGACACAGT TCAGGCAAACATAGAATTGGGGTTAGCTGTTGATGCTCGTGAATATGGGATTGGTGCCCAGATTCTGGGGGATATAGGAG TTAGAACTATGAGGCTAATGACTAACAACCCAGCAAAGTTCACTGGTCTCAAAGGGTATGGTTTGGCAGTGCTAGGGAGG GTTCCTGTAATGACACCAATTACTGAGGAAAACAAGAGGTACCTGGAAACAAAAAGGACCAAAATGGGACATGTTTATGG GTCTGATATACAAGGATCGTTACCTGGATTCAACAATTCAATTGTAAATGACCAAGACTTACCAGAGAACACTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0279800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDSASFPHPLISQVITSSSFHRSYPNHQSARFSLWNNRLWNSALCATGYSAAGIEDVFDDSNLKRNDNGSFFGALAPFET LKAEITPETNDFFVSDAEGDPDCPSEGYSSVEQALNTLRQGKFVIVVDDENGDIQGNLIMAASLTSTKDVAFMVKHGSGI VSVGMKEEDLQRLNLPLMSPETEDEDSSAPTFTITVDAKYGTSTGVSAADRAKTVLALSSPVSTSEDFIKPGHVFPLKYR NGGVLRRAGHTEASVDLVTLAGLSPVSVLTALVDEDGGSMASLPYLRKLAFEYSIPIVSITDLIRYRRKREKLVERTSVS RLPTKWGLFQAYCYRSKLDGTEHIAIVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGDQLDLAMRLIEEAGRGVVVYL RGHEGRGIGLGHKLKAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILGDIGVRTMRLMTNNPAKFTGLKGYGLAVLGR VPVMTPITEENKRYLETKRTKMGHVYGSDIQGSLPGFNNSIVNDQDLPENT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21327:SF29
4 526 523 1.4E-295 –
PANTHER
PTHR21327
4 526 523 1.4E-295 –
Gene3D
G3DSA:3.90.870.10
102 313 212 3.1E-73 –
Hamap
MF_01283
107 504 398 50.173
IPR016299
SUPERFAMILY
SSF55821
109 314 206 7.55E-65
IPR017945
TIGRFAM
TIGR00506
110 307 198 9.6E-58
IPR000422
Pfam
PF00926
112 306 195 2.2E-67
IPR000422
Hamap
MF_00179
312 508 197 39.608
IPR000926
SUPERFAMILY
SSF142695
312 484 173 2.62E-69
IPR036144
CDD
cd00641
313 504 192 5.1924E-117
IPR000926
Gene3D
G3DSA:3.40.50.10990
314 485 172 1.6E-73
IPR036144
TIGRFAM
TIGR00505
319 505 187 9.2E-75
IPR000926
Pfam
PF00925
319 482 164 1.3E-71
IPR032677

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003935
Molecular function GTP cyclohydrolase II activity Catalysis of the reaction: GTP + 3 H(2)O = 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + diphosphate + formate + 3 H(+).
Subterm of
GO:0008686
Molecular function 3,4-dihydroxy-2-butanone-4-phosphate synthase activity Catalysis of the reaction: D-ribulose 5-phosphate = (2S)-2-hydroxy-3-oxobutyl phosphate + formate + H(+).
Subterm of
GO:0009231
Biological process Riboflavin biosynthetic process The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0279800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…